Genetic analysis of Pinus strobus and Pinus monticola populations from Canada using ISSR and RAPD markers: Development of genome-specific SCAR markers

Plant Systematics and Evolution

Volumn 267, Issue 1-4, 2007, Pages 47-63

  Mehes, M S ^a   Nkongolo, K K ^a   Michael, P ^a  

^a LAURENTIAN UNIVERSITY   (Canada)

Author keywords

Genome specific sequences; ISSR; Phylogenetic relationships; Pine; RAPD; SCAR markers

Indexed keywords

CONIFEROPHYTA; PINUS MONTICOLA; PINUS STROBUS;

EID: 34548628646     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-007-0534-1     Document Type: Article

References (36)

1. Armstrong J. S., Gibbs A. J., Peakall R., Weiller G. (1994) The RAPDistance Package. 2005.
2. Barnes B. V. (1967) Phenotypic variation associated with elevation in western white pine. Forest Sci. 13: 14, 357-364.
3. Beaulieu J. and Simon J. P. (1994). Genetic structure and variability in Pinus strobus in Québec. Canad. J. For. Res. 24: 1726-1733
4. Brown A. H. D. (1979). Enzyme polymorphism in plant populations. Theor. Population Biol. 15: 1-42
5. Buchert G. P. (1994). Genetics of white pine and implications for management and conservation. The Forestry Chronicle 70: 427-434
6. DeVerno L. L. and Mosseler A. (1997). Genetic variation in red pine (Pinus resinosa) revealed by RAPD and RAPD-RFLP analysis. Canad. J. For. Res 27: 1316-1320
7. Echt C. S., MayMarquardt P., Hseih M. and Zahorchak R. (1996). Characterization of microsatellite markers in eastern white pine. Genome 39: 1102-1108
8. Echt C. S. and Nelson C. D. (1997). Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theor. Appl. Genet. 94: 1031-1037
9. Eckert R. T., Joly R. J. and Neale D. B. (1981). Genetics of isozyme variants and linkage relationships among allozyme loci in 35 eastern white pine clones. Canad. J. For. Res. 11: 573-579
10. Flint R. F. (1945) Glacial map of North America. Spec. Pap. Geol. Soc. Am. No. 60.
11. Fang D. Q. and Roose M. L. (1997). Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor. Appl. Genet. 95: 408-417
12. Gernandt D. S., Lopez G. G., Garcia S. O. and Liston A. (2005). Phylogeny and classification of Pinus. Taxon 54: 29-42
13. Grotkopp E., Rejmanek M., Sanderson M. J. and Rost T. L. (2004). Evolution of genome size in pines (Pinus) and its life-history correlates: Supertree analyses. Evolution 58: 1705-1729
14. Jain T. B., Graham R. T. and Morgan P. (2004). Western white pine growth relative to forest openings. Canad. J. For. Res. 34: 2187
15. Kim M. S., Brunsfeld S. J., McDonald G. I. and Klopfenstein E. (2003). Effect of white pine blister rust (Cronartium ribicola) and rust-resistance breeding on genetic variation in western white pine (Pinus monticola). Theor. Appl. Genet. 106: 1004-1010
16. Mantel M. (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220
17. Nagaoka T. and Ogihara Y. E. (1997). Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 94: 597-602
18. Nkongolo K. K., Michael P. and Demers T. (2005). Application of ISSR, RAPD, and cytological markers to the certification of Picea mariana, P. glauca, and P. engelmannii trees, and their putative hybrids. Genome 48: 302-311
19. Nkongolo K. K., Michael P. and Gratton W. S. (2002). Identification and characterization of RAPD markers inferring genetic relationships among Pine species. Genome 45: 51-58
20. Nkongolo K. K. (1999). RAPD and cytological analyses of Picea spp. from different provenances: Genomic relationships among taxa. Hereditas 130: 137-144
21. Nkongolo K. K., Deverno L. and Michael P. (2003). Genetic validation and characterization of RAPD markers differentiating black and red spruces: molecular certification of spruce trees and hybrids. Pl. Syst. Evol. 236: 151-163
22. Qian W., Ge S. and Hong D. Y. (2001). Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theor. Appl. Genet. 102: 440-449
23. Quinby P. A. (2000) An overview of the conservation of old-growth red and eastern white pine forest in Ontario. Report No. 23, Ancient Forest Research Report.
24. Raina S. N., Rani V., Kojima T. and Ogihara Y. (2001). RAPD and ISSR fingerprints as useful genetic markers for analyis of genetic diversity, varietal identification, and phylogenetic relationships in peanut (Arachis hypogaea) cultivars and wild species. Genome 44: 763-772
25. Rajora O. P., DeVerno L., Mosseler A. and Innes D. J. (1998). Genetic diversity and population structure of disjunct Newfoundland and central Ontario populations of eastern white pine. Canad. J. Bot. 76: 500
26. Rehfeldt G. E. (1979). Ecotypic differentiation in populations of Pinus monticola in North Idaho- Myth or reality?. Amer. Naturalist 114: 627-636
27. Rehfeldt G. E., Hoff R. J. and Steinhoff R. J. (1984). Geographic patterns of genetic variation in Pinus monticola. Bot. Gaz. 145: 229-239
28. Rus-Kortekaas W., Smulders M. J. M., Arens P., Vosman B. (1994) Direct comparison of levels of genetic variation in tomato detected by a GACAcontaining microsatellite probe and by random amplified polymorphic DNA. Genome: 375-381.
29. Ryu J. B. (1982) Genetic structure of Pinus strobus L. based on foliar isozymes from 27 provenances. Ph.D., University of New Hampshire, Durham.
30. Saitou N., Nei M. (1987) The neighbor-joining method:A new method for reconstructing phylogenetic trees. Molec. Biol. Evol. pp. 406-425.
31. Sambrook J., Fritsch E. F. and Maniatis T. (1989). Molecular cloning: a laboratory manual. 2nd edn. Cold Springs Harbor Laboratory, Long Island, New York
32. Sanchez de la Hoz M. P. S., Davila J. A., Loarce Y. and Ferrer E. (1996). Simple sequence repeat primers used in polymerase chain reaction amplifications to study genetic diversity in barley. Genome 39: 112-117
33. Steinhoff R. J., Joyce D. G. and Fins L. (1983). Isozyme variation in Pinus monticola. Canad. J. For. Res. 13: 1122-1132
34. Syring J., Willyard A., Cronn R. and Liston A. (2005). Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci. Amer. J. Bot. 92: 2086-2100
35. Vidakovic M. (1991) Conifers morphology and variation, Translated from Croatian by Maja Soljan. Croatia, Graficki Zavod Hrvastske.
36. Williams J. G. K., Kubelik A. R., Livak K. J., Rafalski J. A. and Tingey S. V. (1990). DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18: 6531-6535