Multi-locus phylogeography of the dusky dolphin (Lagenorhynchus obscurus): Passive dispersal via the west-wind drift or response to prey species and climate change?

BMC Evolutionary Biology

Volumn 7, Issue , 2007, Pages

  Harlin Cognato, April D ^a   Markowitz, Tim ^b   Würsig, Bernd ^c   Honeycutt, Rodney L ^d  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b Dusky Dolphin Research Project Muritai   (New Zealand)

^c TEXAS A AND M UNIVERSITY   (United States)

^d PEPPERDINE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANCHOVY; ANIMAL TISSUE; ARTICLE; ATLANTIC OCEAN; CLIMATE CHANGE; COOLING; CORRELATION ANALYSIS; DOLPHIN; GENE LOCUS; GENETIC DRIFT; HISTORY; HYPOTHESIS; INDIAN OCEAN; LAGENORHYNCHUS OBLIQUIDENS; LAGENORHYNCHUS OBSCURUS; MIGRATION; NEW ZEALAND; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PALEOCEANOGRAPHY; PERU; PHYLOGENY; PHYLOGEOGRAPHY; PLEISTOCENE; POPULATION; PREY; SEA SURFACE TEMPERATURE; SOUTH AFRICA; SPECIES; ANIMAL; CLASSIFICATION; CLIMATE; FISH; FOOD CHAIN; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; INTRON; MOLECULAR GENETICS; POPULATION MIGRATION; SEA; TEMPERATURE; WIND;

CEPHALOPODA; CLUPEIDAE; ENGRAULIDAE; LAGENORHYNCHUS OBSCURUS; PISCES;

ACTIN; CYTOCHROME B; MITOCHONDRIAL DNA;

ACTINS; ANIMAL MIGRATION; ANIMALS; CLIMATE; CYTOCHROMES B; DNA, MITOCHONDRIAL; DOLPHINS; FISHES; FOOD CHAIN; GEOGRAPHY; INTRONS; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHYLOGENY; TEMPERATURE; VARIATION (GENETICS); WIND;

EID: 34548561642     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-131     Document Type: Article

References (52)

1. The surface of ice-age Earth. CLIMAP, Science 1976 191 1131 1136 10.1126/science.191.4232.1131
2. Last glacial sea surface temperatures and sea-ice extent in the Southern Ocean (Atlantic-Indian sector): A multiproxy approach. R Gersonde A Abelmann U Brathauer S Becquey C Bianchi G Cortese H Grobe G Kuhn HS Niebler M Segl R Sieger U Zielinski DK Futterer, Paleoceanography 2003 18 3
3. Modeling the water masses of the Atlantic Ocean at the Last Glacial Maximum. A Paul C Schafer-Neth, Paleoceanography 2003 18 3.1 3.26 10.1029/2002PA000783
4. The monotypic sardines, Sardina and Sardinops: their taxonomy, distribution, stock structure and zoogeogaphy. RH Parrish R Srerra WS Grant, Can J Fish Aquat Sci 1989 46 2019 2036
5. Phylogeography of the trumpetfishes (Aulostomus): Ring species complex on a global scale. BW Bowen AL Bass LA Rocha WS Grant DR Robertson, Evolution 2001 55 5 1029 1039 10.1554/0014-3820(2001)055[1029:POTTAR]2.0.CO;2 11430639
6. Living in a tilted world: climate change and geography limit speciation in Old World anchovies (Engraulis: Engraulidae). SW Grant BW Bowen, Biological Journal of the Linnean Society 2006 88 673 689 10.1111/j.1095-8312.2006.00651.x
7. Origin and radiation of Southern Hemisphere coastal dolphins (genus Cephalorhynchus). FB Pichler D Robineau RNP Goodall MA Meyer C Olavarria CS Baker, Mol Ecol 2001 10 2215 2223 10.1046/j.0962-1083.2001.01360.x 11555263
8. The phylogeography of dusky dolphins (Lagenorhynchus obscurus): a critical examination of network methods and rooting procedures. I Cassens K Van Warebeek PB Best EA Crespo J Reyes, Mol Ecol 2003 12 1781 1792 10.1046/j.1365-294X.2003.01876.x 12803631
9. On the identity of Prodelphinus petersii (Lutken, 1889) and records of dusky dolphin Lagenorhynchus obscurus (Gray, 1828) from the southern Indian and Atlantic Oceans. K Van Warebeek PJH Van Bree PB Best, South African Journal of Marine Science 1995 16 25 35
10. Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution. AD Harlin-Cognato RL Honeycutt, BMC Evolutionary Biology 2006 6 87 17078887 10.1186/1471-2148-6-87
11. Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences. RG LeDuc WF Perrin AE Dizon, Marine Mammmal Science 1999 15 619 648 10.1111/j.1748-7692.1999.tb00833.x
12. Genetic evidence on the demography of speciation in allopatric dolphin species. MP Hare F Cipriano SR Palumbi, Evolution 2002 56 4 804 816 12038538
13. Antitropical distributions and speciation in dolphins of the genus Lagenorhynchus: a preliminary analysis. F Cipriano, Molecular Genetics of Marine Mammals Cambridge, MA, Interntional Whaling Commission, A. E. Dizon SJCWFP, 1997 Special Publication 3 305 316
14. Evidence for male dispersal along the coasts but no migration in pelagic waters in dusky dolphins (Lagenorhynchus obscurus). I Cassens K Van Warebeek PB Best A Tzika AL Van Helden EA Crespo M Milinkovitch, Mol Ecol 2005 14 107 121 10.1111/j.1365-294X.2004.02407.x 15643955
15. Genetic structure, diversity, and historical demography of New Zealand's dusky dolphin (Lagenorhynchus obscurus). AD Harlin T Markowitz CS Baker B Wursig RL Honeycutt, Journal of Mammalogy 2003 84 2 702 717 10.1644/1545-1542(2003) 084<0702:GSDAHDgt;2.0.CO;2
16. Behavior, ocurrence patterns, feeding ecology, and life history of dusky dolphins (Lagenorhynchus obscurus) off Kaikoura, New Zealand. F Cipriano, University of Arizona 1992
17. Distribution of delphinidae (Cetacea) in relation to sea surface temperatures off eastern and southern New Zealand. DE Gaskin, New Zealand Journal of Marine and Freshwater Research 1968 2 527 534
18. Behavior and ecology of the dusky dolphin, Lagenorhynchus obscurus, in the South Atlantic. B Würsig M Würsig, Fishery Bulletin 1980 77 871 890
19. Geographic variation and sexual dimorphism in the skull of the dusky dolphin, Lagenorhynchus obscurus (Gray, 1828). K Van Warebeek, Fishery Bulletin 1993 91 754 774
20. Quaternary history of the Antarctic Circumpolar Current: evidence from the Scotia Sea. CJ Pudsey JA Howe, Mar Geol 1998 148 1-2 83 112 10.1016/S0025-3227(98)00014-0
21. Geological and geomorphological insights into Antarctic ice sheet evolution. DE Sugden MJ Bentley CO Cofaigh, Phil Trans Roy Soc A-Math Phys Eng Sci 2006 364 1844 1607 1625 10.1098/rsta.2006.1791
22. Quaternary of Tierra del Fuego, southernmost South America: an updated review. J Rabassa A Coronato G Bujalesky M Salemme C Roig A Meglioli C Heusser S Gordillo F Roig A Borromei, Quat Int 2000 68-71 217 240 10.1016/S1040-6182(00) 00046-X
23. Contourite deposits in the central Scotia sea: the importance of the Antarctic Circumpolar Current and the Weddell Gyre Flows. A Maldonado A Barnolas F Bohoyo J Galindo-Zaldivar J Hernandez-Molina F Lobo J Rodriguez-Fernandez L Somoza JT Vazquez, Paleogeogr Paleoclimatol Paleoecol 2003 198 1-2 187 221 10.1016/S0031-0182(03)00401-2
24. Confirmed sightings of dusky dolphins (Lagenorhynchus obscurus) in southern Australian waters. PC Gill GJB Ross WH Dawbin H Wapstra, Marine Mammmal Science 2000 16 452 459 10.1111/j.1748-7692.2000.tb00937.x
25. Whale and dolphin products for sale in Japan and Korea, 1993-95. CS Baker F Cipriano GM Lento SR Palumbi, Scientific Committee of the International Whaling Commission 1996
26. MacClade: Analysis of phylogeny and character evolution. WP Maddison DR Maddison, Sunderland, MA, Sinauer Associates, Inc. 3.0 1992
27. A new statistical method for haplotype reconstruction from population data. M Stephens NJ Smith P Donnelly, American Journal of Human Genetics 2001 68 979 989 10.1086/319501
28. A comparison of Bayesian methods for haplotype reconstruction. M Stephens P Donnelly, American Journal of Human Genetics 2003 73 1162 1169 14574645 10.1086/379378
29. Arlequin: An exploratory population genetics software environment. S Schneider JM Kueffer D Roesslo L Excoffier, Genetics and Biometry Lab, University of Geneva, Switzerland Version 1.0 1997
30. Molecular Evolutionary Genetics. M Nei, New York, Columbia University Press 1987
31. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. J Rozas R Rozas, Bioinformatics 1999 15 174 175 10.1093/bioinformatics/15.2.174 10089204
32. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 9 817 818 10.1093/bioinformatics/14.9.817 9918953
33. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. M Hasegawa H Kishino T Yano, Journal of Molecular Evolution 1985 21 160 174 10.1007/BF02101694
34. MRBAYES: Bayesian inference of phylogeny. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
35. TRACER, v.1.1.1. AJ Drummond A Rambaut, University of Oxford, United Kingdom 2004 http://evolve.zoo.ox.ac.uk/software.html
36. PAUP* Phylogenetic Analysis Using Parsimony (*and other methods). DL Swofford, Sunderland, MA, Sinauer and Associates 4 1999
37. Cladisitc analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping IV. Nested analyses with cladogram uncertainty and recombination. AR Templeton CF Sing, Genetics 1993 134 659 669 8100789
38. TCS: a computer program to estimate gene genealogies. M Clement D Posada KA Crandall, Mol Ecol 2000 9 10 1657 1660 10.1046/j.1365-294x.2000.01020.x 11050560
39. Intraspecific cladogram estimation: accuracy at higher levels of divergence. KA Crandall, Systematic Biology 1994 43 2 222 235 10.2307/2413463
40. Intraspecific gene genealogies: trees grafting into networks. D Posada KA Crandall, TREE 2001 16 1 37 45 11146143
41. Estimating effective population size and neutral mutation rate from sequence data using Metropolis-Hastings sampling. MK Kuhner J Yamato J Felsenstein, Genetics 1995 140 1421 1430 7498781
42. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. L Excoffier PE Smouse JM Quattro, Genetics 1992 131 479 491 1644282
43. Isolation by distance. S Wright, Genetics 1943 28 114 138 17247074
44. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. P Beerli J Felsenstein, Genetics 1999 152 763 773 10353916
45. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. P Beerli J Felsenstein, Proc Nat Acad Sci (USA) 2001 98 4563 4568 10.1073/pnas.081068098
46. RHINO v.1.2. A Rambaut, University of Oxford, United Kingdom 2003 http://evolve.zoo.ox.ac.uk/software.html
47. Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins. M Nikaido F Matsuno H Hamilton RL Brownell Jr. Y Cao W Ding Z Zuoyan AM Shedlock RE Fordyce M Hasegawa N Okada, Proceeding of the National Academy of Science, USA 2001 98 7384 7389 10.1073/pnas.121139198
48. Molecular genetic assessment of bipolarity in the anchovy genus Engraulis. WS Grant RW Leslie BW Bowen, J Fish Biol 2005 67 5 1242 1265 10.1111/j.1095-8649.2005.00820.x
49. Interrelationships of fossil and recent anchovies (Teleostei: Engraulidae) and description of a new species from the Miocene of Cyprus. L Grande G Nelson, American Museum of Natural History, Noviates 1985 2826 1 16
50. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. WS Grant BW Bowen, Journal of Heredity 1998 89 5 415 426 10.1093/jhered/89.5.415
51. Evolution of the Eastern Tropical Pacific through Plio-Pliestocene glaciation. KT Lawrence Z Liu TD Herbert, Science 2006 312 79 83 10.1126/science.1120395 16601186
52. Migrate: documentation and program, part of LAMARC. Version 2.0. Revised December 23, 2004. P Beerli, 2004 http://evolution.genetics.washington.edu/ lamarc/index.html Downloaded: April 26, 2007