Molecular genetic assessment of bipolarity in the anchovy genus Engraulis

Journal of Fish Biology

Volumn 67, Issue 5, 2005, Pages 1242-1265

  Grant, W S ^a,d   Leslie, R W ^b   Bowen, B W ^c  

^a UNIVERSITY OF THE WITWATERSRAND   (South Africa)

^b Coastal and Marine Management ^*  (South Africa)

^c UNIVERSITY OF HAWAII   (United States)

^d UNIVERSITY OF ALASKA ANCHORAGE   (United States)

Author keywords

Allozymes; Anchovy; Antitropical; Dispersal; Mitochondrial DNA; Vicariance

Indexed keywords

ALLOZYME; CYTOCHROME; DISPERSAL; DNA; GENETIC ANALYSIS; HYPOTHESIS TESTING; PHYLOGENETICS; RELATEDNESS; TELEOST; VICARIANCE;

ENGRAULIDAE; ENGRAULIS; ENGRAULIS ANCHOITA; ENGRAULIS EURYSTOLE; ENGRAULIS MORDAX; ENGRAULIS RINGENS; STOLEPHORUS COMMERSONNII;

EID: 27144484884     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2005.00820.x     Document Type: Article

References (52)

1. Aebersold, P. B., Winans, G. A., Teel, D. J., Milner, G. B. & Utter, F. M. (1987). Manual for starch gel electrophoresis: a method for the detection of genetic variation. NOAA Technical Report 61, 1-19.
2. Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control 19, 716-723.
3. Amos, B. & Hoelzel, A. R. (1991). Long-term preservation of whale skin for DNA analysis. Reports of the International Whaling Commission (Special Issue) 13, 99-103.
4. Avise, J. C. (2000). Phylogeography: the History and Formation of Species. Cambridge, MA: Harvard University Press.
5. Baumgartner, T. R., Souter, A. & Ferreira-Bartrina, V. (1992). Reconstruction of the history of Pacific sardine and northern anchovy populations over the past two millennia from sediments of the Santa Barbara Basin, California. California Cooperative Oceanic and Fishery Investigation Reports 33, 24-40.
6. Bembo, D. G., Carvalho, G. R., Cingolani, N. & Pitcher T. J. (1996). Electrophoretic analysis of stock structure in northern Mediterranean anchovies, Engraulis encrasicolus. ICES Journal of Marine Science 53, 115-128.
7. Borsa, P. (2002). Allozyme, mitochondrial-DNA, and morphometric variability indicate cryptic species of anchovy (Engraulis encrasicolus). Biological Journal of the Linnean Society 75, 261-269.
8. Borsa, P., Collet, A. & Durand J.-D. (2004). Nuclear-DNA markers confirm the presence of two anchovy species in the Mediterranean. Comptes Rendus Biologies 327, 1113-1123.
9. Bowen, B. W. & Grant, W. S. (1997). Phylogeography of the sardines (Sardinops spp.): assessing biogeographic models and population histories in temperate upwelling zones. Evolution 51, 1601-1610.
10. Bowen, B. W., Bass, A. L., Rocha, L. A., Grant, W. S. & Robertson, D. R. (2001). Phylogeography of the trumpetfish (Aulostomus spp.): ring species complex on a global scale. Evolution 55, 1029-1039.
11. Briggs, J. C. (1995). Global Biogeography. New York: Elsevier.
12. Cavalli-Sforza, L. L. & Edwards, A. W. F. (1967). Phylogenetic analysis: models and estimation procedures. American Journal of Human Genetics 19, 233-257.
13. Chavez, F. P., Gyan, J., Lluch-Cota, S. E. & Niquen, M. (2003). From anchovies to sardines and back: multidecadal change in the Pacific Ocean. Science 299, 217-221.
14. Coates, A. G. & Obando, J. A. (1996). The geologic evolution of the Central American Isthmus. In Evolution and Environment in Tropical America (Jackson, J. B. C., Coates, A. G. & Budd, A., eds), pp. 21-56. Chicago, IL: University of Chicago Press.
15. Crowley, T. J. & North, G. R. (1991). Paleoclimatology. Oxford: Oxford University Press.
16. Felsenstein, J. (1995). PHYLIP: Phylogeny Inference Package, Version 3.56. Seattle, WA: University of Washington.
17. Grant, W. S. (1985). Biochemical genetic stock structure of the southern African anchovy, Engraulis capensis Gilchrist. Journal of Fish Biology 27, 23-29.
18. Grant, W. S. & Bowen, B. W. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity 89, 415-426.
19. Grant, W. S. & Leslie, R. W. (2001). Inter-ocean dispersal is an important mechanism in the zoogeography of hakes (Pisces: Merluccius). Journal of Biogeography 28, 699-721.
20. Hedgecock, D., Hutchinson, E. S., Li, G., Sly, F. L. & Nelson, K. (1989). Genetic and morphometric variation in the Pacific sardine, Sardinops sagax caerulea: comparisons and contrasts with historical data and with variability in the northern anchovy, Engraulis mordax. Fishery Bulletin, US 87, 653-671.
21. Hillis, D. M. (1984). Misuse and modification of Nei's genetic distance. Systematic Zoology 33, 238-240.
22. Hillis, D. M., Moritz, C. & Mable, B. K. (1996). Molecular Systematics, 2nd edn. Sunderland, MA: Sinauer Associates.
23. Hubbs, C. L. (1952). Antitropical distribution of fishes and other organisms. Proceedings of the Seventh Pacific Science Congress 3, 324-329.
24. Irwin, D. M., Kocher, T. D. & Wilson, A. C. (1991). Evolution of the cytochrome b gene of animals. Journal of Molecular Evolution 32, 128-144.
25. Johns, G. C. & Avise, J. C. (1998). A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Molecular Biology and Evolution 15, 1481-1490.
26. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111-120.
27. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
28. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5, 150-163.
29. Lecomte, F., Grant, W. S., Dodson, J. J., Rodríguez- Sànchez, R. & Bowen, B. W. (2004). Living with uncertainty: genetic imprints of climate shifts in East Pacific Anchovy (Engraulis mordax) and sardines (Sardinops sagax). Molecular Ecology 13, 2169-2182.
30. Magoulas, A., Tsimenides, N. & Zouros, E. (1996). Mitochondrial DNA phylogeny and the reconstruction of the population history of a species: the case of the European anchovy (Engraulis encrasicolus). Molecular Biology and Evolution 13, 178-190.
31. Mercer, J. H. (1976). Glacial history of southern-most South America. Quaternary Research 6, 125-166.
32. Murphy, R. W., Sites, J. W., Jr., Buth, D. G. & Haufler, C. H. (1996). Proteins: isozyme electrophoresis. In Molecular Systematics (Hillis, D. M., Moritz, C. & Mable, B. K., eds), pp. 51-120. Sunderland, MA: Sinauer Associates.
33. Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89, 583-590.
34. Nei, M. & Roychoudhury, A. K. (1974). Sampling variance of heterozygosity and genetic distance. Genetics 76, 379-390.
35. Nelson, G. (1983). Anchoa argentivittata, with notes on other eastern Pacific anchovies and the Indo-Pacific genus Encrasicholina. Copeia 1983, 48-54.
36. Nelson, G. (1984). Identity of the anchovy Hildebrandichthys setiger with notes on relationships and biogeography of the genera Engraulis and Cetengraulis. Copeia 1984, 422-427.
37. Nelson, G. (1985). A decade of challenge: the future of biogeography. In Plate Tectonics and Biogeography (Leviton, A. E. & Aldrich, M. L., eds). Journal of the History of Earth Science Society 4, 187-196.
38. Pérez, J. E., Cervigón, F., Cequea, H., González, D., Padrón, M. & Subero, L. (1975). Estudeo de las relaciones taxonomicas de algunos generos de la familia Engraulidae (Pisces) basado en caracteres bioquimicos. Bolletin Instituto Oceanográfico, Universidad de Oriente, Venezuela 14, 227-232.
39. Posada, D. & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
40. Rodríguez, F., Oliver, J. F., Marín, A. & Medina, J. R. (1990). The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142, 482-501.
41. Roldán, M. I., García-Marín, J. L., Utter, F. M. & Pla, C. (1999). Genetic relationships among Merluccius species. Heredity 83, 79-86.
42. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
43. Schwartzlose, R. A., Alheit, J., Bakun, A., Baumgartner, T. R., Cloete, R., Crawford, R. J. M., Fletcher, W. J., Green-Ruiz, Y., Hagen, E., Kawasaki, T., Lluch-Belda, D., Lluch-Cota, S. E., MacCall, A. D., Matsuura, Y., Nevarez-Martinez, M. O., Parrish, R. H., Roy, C., Serra, R., Shust, K. V., Ward, M. N. & Zuzunaga, J. Z. (1999). Worldwide large-scale fluctuations of sardine and anchovy populations. South African Journal of Marine Science 21, 289-347.
44. Sokal, R. R. & Rohlf, F. J. (1995). Biometry-the Principles and Practice of Statistics in Biological Research, 3rd edn. New York: W. H. Freeman and Co.
45. Stepien, C. A. & Rosenblatt, R. H. (1996). Genetic divergence in antitropical pelagic marine fishes (Trachurus, Merluccius, and Scomber) between North and South America. Copeia 1996, 586-598.
46. Swofford, D. L. (2002). PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sunderland, MA: Sinauer Associates.
47. Taberlet, P., Meyer, A. & Bouvet, J. (1992). Unusually large mitochondrial variation in populations of the blue tit, Parus caeruleus. Molecular Ecology 1, 27-36.
48. Thorpe, J. P. (1982). The molecular clock hypothesis: biochemical evolution, genetic differentiation and systematics. Annual Review of Ecology and Systematics 13, 139-168.
49. Vawter, A. T., Rosenblatt, R. & Gorman, G. C. (1980). Genetic divergence among fishes of the eastern Pacific and the Caribbean: support for the molecular clock. Evolution 34, 705-711.
50. Whitehead, P. J. (1973). The clupeiod fishes of the Guiana. Bulletin of the British Museum of Natural History (Zoology) Supplement 5, 1-227.
51. Whitehead, P. J. P., Nelson, G. J. & Wongratana, T. (1988). FAO Species Catalogue, Vol. 7. Rome: UNDP, FAO.
52. Woodruff, F. & Savin, S. M. (1989). Miocene deepwater oceanography. Paleoceanography 4, 87-140.