Population structure and species boundary delimitation of cryptic Dioryctria moths: An integrative approach

Molecular Ecology

Volumn 16, Issue 17, 2007, Pages 3617-3633

  Roe, Amanda D ^a,b   Sperling, Felix A H ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Cytochrome oxidase; Elongation factor 1 ; Internal transcribed spacer; Morphometrics; Multivariate analysis; Nested clade analysis

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CANADA; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENE FLOW; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; HAPLOTYPE; HISTOLOGY; HYBRIDIZATION; METHODOLOGY; MOTH; PHYLOGENY; SPECIES DIFFERENCE; UNITED STATES;

ANIMALS; CANADA; CLASSIFICATION; DNA, MITOCHONDRIAL; GENE FLOW; GENETIC MARKERS; HAPLOTYPES; HYBRIDIZATION, GENETIC; MOTHS; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; UNITED STATES;

DIORYCTRIA; LEPIDOPTERA; PYRALIDAE;

EID: 34548556433     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03412.x     Document Type: Article

References (91)

1. Abbot P, Withgotti JH (2004) Phylogenetic and molecular evidence for allochronic speciation in gall-forming aphids (Pemphigus). Evolution, 58, 539 553.
2. Abe TA, Spence JR, Sperling FAH (2005) Mitochondrial introgression is restricted relative to nuclear markers in a water strider (Hemiptera: Gerridae) hybrid zone. Canadian Journal of Zoology, 83, 432 444.
3. Avise JC, Arnold J, Ball RM et al 1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489 522.
4. Bachtrog D, Thornton K, Clark A, Andolfatto P (2006) Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution, 60, 292 302.
5. Barluenga M, Stolting KN, Salzburger W, Muschick M, Meyer A (2006) Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature, 439, 719 723.
6. Belbin L (2004). patn. A Software for Extracting and Displaying Patterns in Any Type of Complex (Multivariate) Data. Available from: http://www.patn.com. au/
7. Beltrán M, Jiggins CD, Bull V et al 2002) Phylogenetic discordance at the species boundary: comparative gene geneaologies among rapidly radiating Heliconius butterflies. Molecular Biology and Evolution, 19, 2176 2190.
8. Besansky NJ, Krzywinski J, Lehmann T et al 2003) Semipermeable species boundaries between Anopheles gambiae and Anopheles arabiensis: evidence from multilocus DNA sequence variation. Proceedings of the National Academy of Sciences, USA, 100, 10818 10823.
9. Bethenod M-T, Thomas Y, Rousset F et al 2005) Genetic isolation between two sympatric host plant races of the European corn borer, Ostrinia nubilalis Hubner. II. Assortative mating and host-plant preferences for oviposition. Heredity, 94, 264 270.
10. Bettles CM, Docker MF, Dufour B, Heath DD (2005) Hybridization dynamics between sympatric species of trout: loss of reproductive isolation. Journal of Evolutionary Biology, 18, 1220 1233.
11. Bull V, Beltrán M, Jiggins CD, McMillian WO, Bermingham E, Mallet J (2006) Polyphyly and gene flow between non-sibling Heliconius species. BMC Biology, 4, 11.
12. Cardoso A, Vogler AP (2005) DNA taxonomy, phylogeny and Pleistocene diversification of the Cicindela hybrida species group (Coleoptera: Cincindelidae). Molecular Ecology, 14, 3531 3546.
13. Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. Journal of Molecular Evolution, 22, 252 271.
14. Clement M, Posada D, Crandall KA (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
15. Coyne JA, Orr HA (1989) Two rules of speciation. In : Speciation and its Consequences (eds Ott D, Endler JA pp. 180 207. Sinauer Associates, Sunderland, Massachusetts.
16. Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, Sunderland, Massachusetts.
17. Dayrat B (2005) Towards integrative taxonomy. Biological Journal of the Linnean Society, 85, 407 415.
18. Dopman E, Perez L, Bogdanowicz SM, Harrison RG (2005) Consequences of reproductive barriers for genealogical discordance in the European corn borer. Proceedings of the National Academy of Sciences, USA, 102, 14706 14711.
19. Du Y, Roe AD, Sperling FAH (2005) Phylogenetic framework for Dioryctria (Lepidoptera: Pyralidae: Phycitinae) based on combined analysis of mitochondrial DNA and morphology. Canadian Entomologist, 137, 685 711.
20. Duminil J, Caron H, Scotti I, Cazal SO, Petit RJ (2006) Blind population genetics survey of tropical rainforest trees. Molecular Ecology, 15, 3505 3513.
21. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571 2581.
22. Emelianov I, Marec F, Mallet J (2004) Genomic evidence for divergence with gene flow in host races of the larch budmoth. Proceedings of the Royal Society of London. Series B, Biological Sciences, 271, 97 105.
23. Forister ML (2005) Influence of host plant phenology on Mitoura nelsoni (Lepidpotera: Lycaenidae). Annals of the Entomological Society of America, 98, 295 301.
24. Funk DJ, Filchak KE, Feder JL (2002) Herbivorous insects: model systems for the comparative study of speciation ecology. Genetica, 116, 251 267.
25. Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics, 34, 397 423.
26. Godfray HCJ (2002) Challenges for taxonomy. Nature, 417, 17 19.
27. Gomez-Zurita J, Funk DJ, Vogler AP (2006) The evolution of unisexuality in Calligrapha leaf beetles: molecular and ecological insights on multiple origins via interspecific hybridization. Evolution, 60, 328 347.
28. Gompert Z, Fordyce JA, Forister ML, Shapiro AM, Nice CC (2006) Homoploid hybrid speciation in an extreme habitat. Science, 314, 1923 1925.
29. Gower J (1971) A general coefficient of similarity and some of its properties. Biometrics, 27, 857 871.
30. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological Identification through DNA barcodes. Proceedings of the Royal Society of London. Series B, Biological Sciences, 270, 313 321.
31. Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Systematic Biology, 54, 852 859.
32. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2005) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences, USA, 101, 14812 14817.
33. Hebert PDN, Stoeckle MY, Zemiak TS, Francis CM (2004) Identification of birds through DNA barcodes. Public Library of Science, Biology, 2, e312.
34. Hovemann B, Richter S, Walldorf U, Cziepluch C (1988) Two genes encode related cytoplasmic elongation factor 1 alpha (EF-1a) in Drosophila melanogaster with continuous stage specific expression. Nucleic Acids Research, 16, 3175 3194.
35. Hudson RR, Boos DD, Kaplan NL (1992) A statistical test for detecting geographic subdivision. Molecular Biology and Evolution, 9, 138 151.
36. Huelsenbeck JP, Ronquist F (2001) mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
37. Kliman RM, Andolfatto P, Coyne JA et al 2000) The population genetics of the origin and divergence of the Drosophila simulans complex species. Genetics, 156, 1913 1931.
38. Knolke S, Erlacher S, Hausmann A, Miller MA, Segerer AH (2005) A procedure for combined genitalia dissection and DNA extraction in Lepidoptera. Insect Systematics and Evolution, 35, 401 409.
39. Kronforst MR, Young LG, Blume LM, Gilbert LE (2006) Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies. Evolution, 60, 1254 1268.
40. Laffin RD, Langor DW, Sperling FAH (2004) Populations structure and gene flow in the white pine weevil, Pissodes strobi (Coleoptera: Curculionidae). Annals of the Entomological Society of America, 97, 949 956.
41. Llopart A, Lachaise D, Coyne JA (2005) Multilocus analysis of introgression between two sympatric sister species of Drosophila: Drosophila yakuba and D. Santomea. Genetics, 171, 197 210.
42. Lynch M, Crease TJ (1990) The analysis of population survey data on DNA-sequence variation. Molecular Biology and Evolution, 7, 377 394.
43. Machado CA, Hey J (2003) The causes of phylogenetic conflict in a classic Drosophila species group. Proceedings of the Royal Society of London. Series B, Biological Sciences, 270, 1193 1202.
44. Mallet J, Willmot K (2003) Taxonomy: Renaissance or Tower of Babel? Trends in Ecology & Evolution, 18, 57 59.
45. Marko PB (2005) An intraspecific comparative analysis of character divergence between sympatric species. Evolution, 59, 554 564.
46. Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. Public Library of Science, Biology, 3, e422.
47. Moore WS (1995) Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution, 49, 718 726.
48. Munroe E (1959) Canadian species of Dioryctria Zeller (Lepidoptera: Pyralidae). The Canadian Entomologist, 91, 65 72.
49. Mutuura A, Munroe E (1972) American species of Dioryctria (Lepidoptera: Pyralidae) III. Grouping of species: species of the auranticella group, including the Asian species, with the description of a new species. The Canadian Entomologist, 104, 609 625.
50. Mutuura A, Munroe E (1973) American species of Dioryctria (Lepidoptera: Pyralidae) IV. The schuetzeella group and the taxonomic status of the spruce cone moth. The Canadian Entomologist, 105, 653 668.
51. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
52. Neunzig HH (2003) Pyraloidea, Pyralidae (part), Phycitinae (part). The Moths of America North of Mexico, fascicles 15.2-15.5.
53. Nosil P, Crespi BJ, Sandoval CP (2002) Host-plant adaptation drives the parallel evolution of reproductive isolation. Nature, 417, 440 443.
54. Ohshima I, Yoshizawa K (2006) Multiple host shifts between distantly related plants, Juglandaceae and Ericaceae, in the leaf-mining moth Acrocercops leucophaea complex (Lepidoptera: Gracillariidae). Molecular Phylogenetics and Evolution, 38, 231 240.
55. Posada D, Crandall KA (1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
56. Posada D, Crandall KA, Templeton AR (2000) geodis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
57. Presgraves DC (2002) Patterns of postzygotic isolation in Lepidoptera. Evolution, 56, 1168 1183.
58. Putnam AS, Scriber JM, Andolfatto P (2007) Discordant divergence times among Z-chromosome regions between two ecologically distinct swallowtail butterfly species. Evolution, 61, 912 927.
59. Rasband W (2006) imagej. US National Institute of Health, Bethesda, Maryland.
60. Reed RD, Sperling FAH (1999) Interaction of process partitions in phylogenetic analysis: an example from the swallowtail butterfly genus Papilio. Molecular Biology and Evolution, 16, 286 297.
61. Richmond JA (1995) Macrogeographic genetic variation in populations of the webbing coneworm (Lepidoptera: Pyralidae). Journal of Entomological Science, 30, 349 358.
62. Roe AD, Sperling FAH (2007) Patterns of evoluton of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding. Molecular Phylogenetics and Evolution, (in press).
63. Roe AD, Stein JD, Gillette NE, Sperling FAH (2006) Identification of Dioryctria (Lepidoptera: Pyralidae) in a seed orchard at Chico, California. Annals of the Entomological Society of America, 99, 433 448.
64. Ronquist F, Huelsenbeck JP (2003) mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
65. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) dnasp, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496 2497.
66. Rubinoff D, Cameron S, Will KW (2006) A genomic perspective on the shortcomings of mitochondrial DNA for 'barcoding' identification. Journal of Heredity, 97, 581 594.
67. Rubinoff D, Holland BS (2005) Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Systematic Biology, 54, 952 961.
68. Salzburger W, Baric S, Sturmbauer C (2002) Speciation via introgressive hybridization in East African cichlids? Molecular Ecology, 11, 619 625.
69. Servedio MR, Saetre G-P (2003) Speciation as a positive feedback loop between postzygotic and prezygotic barriers to gene flow. Proceedings of the Royal Society Series B, 270, 1473 1479.
70. Shaw KL (2002) Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proceedings of the National Academy of Sciences, USA, 99, 16122 16127.
71. Sheck A, Groot A, Ward C et al 2006) Genetics of sex pheromone blend differences between Heliothis virescens and Heliothis subflexa: a chromosome mapping approach. Journal of Evolutionary Biology, 19, 600 617.
72. Simon C, Frati F, Beckenbach A et al 1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651 701.
73. Sites JW, Marshall JC (2003) Delimiting species: a Renaissance issue in systematic biology. Trends in Ecology & Evolution, 18, 462 470.
74. Sites JW, Marshall JC (2004) Operational criteria for delimiting species. Annual Review of Ecology Evolution and Systematics, 35, 199 227.
75. Sopow SL, Bennet RG, Landry J-F, Landry B (1996) Identification of the 'grey' Dioryctria species of British Columbia (Lepidoptera: Pyralidae). Journal of the Entomological Society of British Columbia, 93, 75 91.
76. Sperling F (1994) Sex-linked genes and species differences in Lepidoptera. The Canadian Entomologist, 126, 807 818.
77. Sperling F (2003) Butterfly molecular systematics: from species definitions to higher-level phylogenies. In : Butterflies: Evolution and Ecology Taking Flight (eds Boggs C, Watt W, Ehrlrich P pp. 431 458. University of Chicago Press, Chicago.
78. Sperling FAH, Hickey DA (1994) Mitochondrial DNA sequence variation in the spruce budworm species complex (Choristoneura: Lepidoptera). Molecular Biology and Evolution, 11, 656 665.
79. Sperling FAH, Spence JR, Andersen NM (1997) Mitochondrial DNA, allozymes, morphology, and hybrid compatibility in Limnoporus water striders (Heteroptera: Gerridae): do they all track species boundaries? Annals of the Entomological Society of America, 90, 401 415.
80. Steiner FM, Schlick-Steiner BC, Konrad H et al 2006) No sympatric speciation here: multiple data sources show that the ant Myrmica microrubra is not a separate species but an alternate reproductive morph of Myrmica rubra. Journal of Evolutionary Biology, 19, 777 787.
81. Swofford DL (2002) paup*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
82. Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
83. Templeton AR (2001) Using phylogeographic analyses of gene trees to test species status and processes. Molecular Ecology, 10, 779 791.
84. Templeton AR, Routman E, Phillips CA (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the Tiger Salamander, Ambystoma tigrinum. Genetics, 140, 767 782.
85. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659 669.
86. Turner TL, Hahn MW, Nuzhdin SV (2005) Genomic islands of speciation in Anopheles gambiae. Public Library of Science, Biology, 3, e285.
87. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA gene for phylogenetics. In : PCR Protocols: a Guide to Methods and Applications (eds Innis MA, Gelfand DH, Sninsky JJ, White TJ p. 482. Academic Press, San Diego California.
88. Will KW, Mishler BD, Wheeler QD (2005) The perils of DNA barcoding and need for integrative taxonomy. Systematic Biology, 54, 844 851.
89. Will KW, Rubinoff D (2004) Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics, 20, 47 55.
90. Wilson EO (2003) The encyclopedia of life. Trends in Ecology & Evolution, 18, 77 80.
91. Zhu J, Chastain B, Spohn B, Haynes K (1997) Assortative mating in two pheromone strains of the cabbage looper moth, Trichoplusia ni. Journal of Insect Behavior, 10, 805 817.