Simulation Modeling in Plant Breeding: Principles and Applications

Agricultural Sciences in China

Volumn 6, Issue 8, 2007, Pages 908-921

  WANG, Jian kang ^a   Wolfgang H, Pfeiffer ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

Author keywords

breeding simulation; breeding strategy; design breeding; genetic model

Indexed keywords

EID: 34548424968     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(07)60129-1     Document Type: Article

References (30)

1. NH B., and Keightley P. Understanding quantitative genetic variation. Nature Review Genetics 3 (2002) 11-21
2. Bernardo R. Breeding for Quantitative Traits in Plants (2002), Stemma Press, Woodbury, Minnesota
3. Cooper M., Podlich D., and Smith O. Gene-to-phenotype and complex trait genetics. Australian Journal of Agricultural Research 56 (2005) 895-918
4. Eagles H., Eastwood R., Hollamby G., Martin E., and Cornish G. Revision of the estimates of glutenin gene effects at the Glu-B1 locus form southern Australian wheat breeding programs. Australian Journal of Agricultural Research 55 (2004) 1093-1096
5. Eagles H., Hollamby G., Gororo N., and Eastwood R. Estimation and utilization of glutein gene effects from the analysis of unbalanced data from wheat breeding programs. Australian Journal of Agricultural Research 53 (2002) 367-377
6. Falconer D., and Mackay T. Introduction to Quantitative Genetics. 4th ed. (1996), Longman, Essenx, England
7. Fehr W. Principles of Cultivar Development. Vol. 1. Theory and Technique (1987), Macmillian Publishing Company, New York
8. Frary A., Nesbitt T., Frary A., Grandilio S., van der Knaap E., Cong B., Liu J., Meller J., Elber R., Alpert K., and Tanksley S. fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289 (2000) 85-88
9. van Ginkel M, Trethowan R, Ammar K, Wang J, Lillemo M. 2002. Guide to bread wheat breeding at CIMMYT (rev). Wheat Special Report, CIMMYT. D.F. Mexico. No. 5.
10. Goldman I. Prediction in plant breeding. Plant Breeding Reviews 19 (2000) 15-40
11. Hammer G., Chapman S., van Oosterom E., and Podlich D. Trait physiology and crop modeling as a framework to link phenotypic complexity to underlying genetic systems. Australian Journal of Agricultural Research 56 (2005) 947-960
12. Kempthorne O. An overview of the field of quantitative genetics. In: Weir B., Eisen E., Goodman M., and Namkoong G. (Eds). Proceedings of the 2nd International Conference on Quantitative Genetics (1988), Sinauer Associates. Inc., Sunderland, MA 47-56
13. Kuchel H., Ye G., Fox R., and Jefferies S. Genetic and genomic analysis of a targeted marker-assisted wheat breeding strategy. Molecular Breeding 16 (2005) 67-78
14. Li Z., Yu S., Lafitte H., Huang L., Courtois B., Hittalmani S., Vijayakumar C., Liu G., Wang G., Shashidhar H., Zhuang J., Zheng K., Singh V., Sidhu J., Srivantaneeyakul S., and Khush G. QTL x environment interactions in rice. I. Heading date and plant height. Theoretical and Applied Genetics 108 (2003) 141-153
15. Lynch M., and Walsh B. Genetics and Analysis of Quantitative Genetics (1998), Sinauer Associates, Inc., Sunderland, MA
16. Peleman J., and Voort J. Breeding by design. Trends in Plant Science 8 (2003) 330-334
17. Podlich D., and Cooper M. QU-GENE: A platform for quantitative analysis of genetic models. Bioinformatics 14 (1998) 632-653
18. Reymond M., Muller B., Leonardi A., Charcosset A., and Tardiew F. Combining quantitative trait loci and an ecophysiological model to analyze the genetic variability of responses of maize leaf growth to temperature and water deficit. Plant Physiology 131 (2003) 664-675
19. Singh R., Rajaram S., Miranda A., Huerta-Espino J., and Autrique E. Comparison of two crossing and four selection schemes for yield, yield traits, and slow rusting resistance to leaf rust in wheat. Euphytica 100 (1998) 35-43
20. Tanksley S., and Nelson J. Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadpated germplasm into elite breeding lines. Theoretical and Applied Genetics 92 (1996) 191-203
21. Wan J. Perspectives of molecular design breeding in crops. Acta Agronomica Sinica 32 (2006) 455-462 (in Chinese)
22. Wan X., Wan J., Jiang L., Wang J., Zhai H., Weng J., Wang H., Lei C., Wang J., Zhang X., Cheng Z., and Guo X. QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects. Theoretical and Applied Genetics 112 (2006) 1258-1270
23. Wan X., Wan J., Weng J., Jiang L., Bi J., Wang C., and Zhai H. Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theoretical and Applied Genetics 110 (2005) 1334-1346
24. Wang J., Chapman S., Bonnett D., Rebetzke G., and Crouch J. Application of population genetic theory and simulation models to efficiently pyramid multiple genes via marker-assisted selection. Crop Science (2007) (in press).
25. Wang J., Eagles H., Trethowan R., and van Ginkel M. Using computer simulation of the selection process and known gene information to assist in parental selection in wheat quality breeding. Australian Journal of Agricultural Research 56 (2005) 465-473
26. Wang J., Ginkel M., Trethowan R., Ye G., DeLacy I., Podlich D., and Cooper M. Simulating the effects of dominance and epistasis on selecting response in the CIMMYT wheat breeding program using QuLine. Crop Science 44 (2004) 2006-2018
27. Wang J., van Ginkel M., Podlich D., Ye G., Trethowan R., Pfeiffer W., DeLacy I., Cooper M., and Rajaram S. Comparison of two breeding strategies by computer simulation. Crop Science 43 (2003) 1764-1773
28. Wang J., Wan X., Crossa J., Crouch J., Weng J., Zhai H., and Wan J. QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines. Genetical Research 88 (2006) 93-104
29. Yin X., Struik P., and Kropff M. Role of crop physiology in predicting gene-to-phenotype relationships. Trends in Plant Science 9 (2004) 426-432
30. Zeng Z. Precision mapping of quantitative trait loci. Genetics 136 (1994) 1457-1468