Intraspecies diversity of the industrial yeast strains Saccharomyces cerevisiae and Saccharomyces pastorianus based on analysis of the sequences of the internal transcribed spacer (ITS) regions and the D1/D2 region of 26S rDNA

Bioscience, Biotechnology and Biochemistry

Volumn 71, Issue 7, 2007, Pages 1616-1620

  Kawahata, Miho ^a,b,c   Fujii, Tsutomu ^a   Iefuji, Haruyuki ^a,b  

^a NATIONAL RESEARCH INSTITUTE OF BREWING   (Japan)

^b HIROSHIMA UNIVERSITY   (Japan)

^c Andersen Institute of Bread and Life Co Ltd   (Japan)

Author keywords

26S rDNA D1 D2; Industrial yeast; Internal transcribed spacer regions; Intraspecies diversity

Indexed keywords

INDUSTRIAL YEAST; INTERNAL TRANSCRIBED SPACER REGIONS; INTRASPECIES DIVERSITY; RDNA;

BIODIVERSITY; DNA; NUCLEOTIDES; POLYMORPHISM;

YEAST;

FUNGAL DNA; RIBOSOME RNA; RNA, RIBOSOMAL, 26S; UNCLASSIFIED DRUG;

ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; SACCHAROMYCES CEREVISIAE;

DNA, FUNGAL; RNA, RIBOSOMAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES PASTORIANUS;

EID: 34548405134     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.60673     Document Type: Article

References (13)

1. Guadet, J., Julien, J., Lafay, J. F., and Brygoo, Y., Phylogeny of some Fusarium species, as determined by large-subunit rRNA sequence comparison. Mol. Biol. Evol., 6, 227-242 (1989).
2. Veldman, G. M., Brand, R. C., Klootwijk, J., and Planta, R., Some characteristics of processing sites in ribosomal precursor RNA of yeast. Nucleic Acids Res., 8, 2907-2920 (1980).
3. Veldman, G. M., Klootwijk, J., van Heerikhuizen, H., and Planta, R. J., The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon: possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript. Nucleic Acids Res., 9, 4847-4862 (1981).
4. Smole Mozina, S., Dlauchy, D., Deak, T., and Raspor, P., Identification of Saccharomyces sensu stricto and Torulaspora yeasts by PCR ribotyping. Lett. Appl. Microbiol., 24, 311-315 (1997).
5. Kurtzman, C. P., and Robnett, C. J., Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek, 73, 331-371 (1998).
6. Guillamon, J. M., Sabate, J., Barrio, E., Cano, J., and Querol, A., Rapid identification of wine yeast species based on RFLP analysis of the ribosomal internal transcribed spacer (ITS) region. Arch. Microbiol., 169, 387-392 (1998).
7. Esteve-Zarzoso, B., Belloch, C., Uruburu, F., and Querol, A., Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bacteriol., 49(Pt 1), 329-337 (1999).
8. Montrocher, R., Verner, M. C., Briolay, J., Gautier, C., and Marmeisse, R., Phylogenetic analysis of the Saccharomyces cerevisiae group based on polymorphisms of rDNA spacer sequences. Int. J. Syst. Bacteriol., 48 (Pt 1), 295-303 (1998).
9. Rainieri, S., Kodama, Y., Kaneko, Y., Mikata, K., Nakao, Y., and Ashikari, T., Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome. Appl. Environ. Microbiol., 72, 3968-3974 (2006).
10. Oda, Y., and Ouchi, K., Principal-component analysis of the characteristics desirable in baker's yeasts. Appl. Environ. Microbiol., 55, 1495-1499 (1989).
11. Azumi, M., and Goto-Yamamoto, N., AFLP analysis of type strains and laboratory and industrial strains of Saccharomyces sensu stricto and its application to phenetic clustering. Yeast, 18, 1145-1154 (2001).
12. White, T. J., Bruns, T., Lee, S., and Taylor, J., Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In "PCR Protocols: A Guide to Methods and Applications," eds. Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., Academic Press, San Diego, pp. 315-322 (1990).
13. Randez-Gil, F., Sanz, P., and Prieto, J. A., Engineering baker's yeast: room for improvement. Trends Biotechnol., 17, 237-244 (1999).