Genetic clustering of Trypanosoma cruzi I lineage evidenced by intergenic miniexon gene sequencing

Infection, Genetics and Evolution

Volumn 7, Issue 5, 2007, Pages 587-593

  O'Connor, Olivia ^a   Bosseno, Marie France ^a   Barnabé, Christian ^a   Douzery, Emmanuel J P ^b   Brenière, Simone Frédérique ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b UNIV MONTPELLIER   (France)

Author keywords

Miniexon gene; Phylogeny; Polymorphism; T. cruzi I; Trypanosoma cruzi

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; EXON; GENE CLUSTER; GENE SEQUENCE; GENE STRUCTURE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MARKER GENE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; OPOSSUM; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTH AMERICA; STRAIN DIFFERENCE; TRYPANOSOMA CRUZI;

ANIMALS; BASE SEQUENCE; DNA, INTERGENIC; EXONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; TRYPANOSOMA CRUZI;

DIDELPHIS; MAMMALIA; MASTIGOPHORA (FLAGELLATES); TRYPANOSOMA CRUZI;

EID: 34548315905     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2007.05.003     Document Type: Article

References (33)

1. Barnabé, C., Brenière, S.F., 1999. Eco-distribución de los clones de Trypanosoma cruzi. In: Chagas La Enfermedad en Bolivia, Conocimientos Cientificos al Inicio del Programa de Control (1998-2002), Julio R. Alfred Cassab et al. Copyright, Editiones Gráficas "E. G.", La Paz, Bolivia pp. 209-215.
2. Barnabé C., Yaeger R., Pung O., and Tibayrenc M. Trypanosoma cruzi: a considerable phylogenetic divergence indicates that the agent of Chagas disease is indigenous to the native fauna of the United States. Exp. Parasitol. 99 (2001) 73-79
3. Brenière S.F., Pietrokovsky S., Gastelum E.M., Bosseno M.F., Soto M.M., Ouaissi A., Kasten F.L., and Wisnivesky-Colli C. Feeding patterns of Triatoma longipennis Usinger (Hemiptera, Reduviidae) in peridomestic habitats of a rural community in Jalisco State, Mexico. J. Med. Entomol. 41 (2004) 1015-1020
4. Brisse S., Barnabé C., and Tibayrenc M. Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis. Int. J. Parasitol. 30 (2000) 35-44
5. Chevenet F., Brun C., Banuls A.L., Jacq B., and Christen R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinform. 7 (2006) 439
6. De Lange T., Berkvens T.M., Veerman H.J., Frasch A.C., Barry J.D., and Borst P. Comparison of the genes coding for the 5′ terminal sequence of messenger RNAs in three trypanosome species. Nucl. Acids Res. 12 (1984) 4431-4443
7. Diosque P., Padilla A.M., Cimino R.O., Cardozo R.M., Negrette O.S., Marco J.D., Zacca R., Meza C., Juarez A., Rojo H., Rey R., Corrales R.M., Nasser J.R., and Basombrio M.A. Chagas disease in rural areas of Chaco Province, Argentina: epidemiologic survey in humans, reservoirs and vectors. Am. J. Trop. Med. Hyg. 71 (2004) 590-593
8. Espinoza B., Vera-Cruz J.M., Gonzalez H., Ortega E., and Hernandez R. Genotype and virulence correlation within Mexican stocks of Trypanosoma cruzi isolated from patients. Acta Trop. 70 (1998) 63-72
9. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
10. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
11. Fernandes O., Santos S.S., Cupolillo E., Mendonca B., Derre R., Junqueira A.C., Santos L.C., Sturm N.R., Naiff R.D., Barret T.V., Campbell D.A., and Coura J.R. A mini-exon multiplex polymerase chain reaction to distinguish the major groups of Trypanosoma cruzi and T. rangeli in the Brazilian Amazon. Trans. R. Soc. Trop. Med. Hyg. 95 (2001) 97-99
12. de Freitas J.M., Augusto-Pinto L., Pimenta J.R., Bastos-Rodrigues L., Goncalves V.F., Teixeira S.M., Chiari E., Junqueira A.C., Fernandes O., Macedo A.M., Machado C.R., and Pena S.D. Ancestral genomes, sex, and the population structure of Trypanosoma cruzi. PLoS Pathog. 2 (2006) e24
13. Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 (1996) 543-548
14. Garzon E., Genna F., Bosseno M.F., Simony-La Fontaine J., Radal M., Sereno D., Mathieu-Daude F., Ouaissi A., and Brenière S.F. Differential infectivity and immunopathology in murine experimental infections by two natural clones belonging to the Trypanosoma cruzi I lineage. Parasitology 131 (2005) 109-119
15. Gaunt M.W., Yeo M., Frame I.A., Stothard J.R., Carrasco H.J., Taylor M.C., Mena S.S., Veazey P., Miles G.A., Acosta N., De Arias A.R., and Miles M.A. Mechanism of genetic exchange in American trypanosomes. Nature 421 (2003) 936-939
16. Guindon S., and Gascuel O. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
17. Herrera C., Bargues M.D., Fajardo A., Montilla M., Triana O., Vallejo G.A., and Guhl F. Identifying four Trypanosoma cruzi I isolate haplotypes from different geographic regions in Colombia. Infect. Genet. Evol. 7 (2007) 535-539
18. Kawashita S.Y., Sanson G.F., Fernandes O., Zingales B., and Briones M.R. Maximum-likelihood divergence date estimates based on rRNA gene sequences suggest two scenarios of Trypanosoma cruzi intraspecific evolution. Mol. Biol. Evol. 18 (2001) 2250-2259
19. Miles M.A., Cedillos R.A., Povoa M.M., De Souza A.A., Prata A., and Macedo V. Do radically dissimilar Trypanosoma cruzi strains (zymodemes) cause Venezuelan and Brazilian forms of Chagas' disease?. Lancet 1 (1981) 1338-1340
20. Momen H. Taxonomy of Trypanosoma cruzi: a commentary on characterization and nomenclature. Mem. Inst. Oswaldo Cruz 94 (1999) 181-184
21. Monteon-Padilla V.M., Vargas-Alarcon G., Vallejo-Allende M., and Reyes P.A. Specific dilated myocardiopathy. Chronic chagasic cardiopathy at the National Institute of Cardiology Ignacio Chavez. Arch. Cardiol. Mex. 72 (2002) S148-S152
22. Murthy V.K., Dibbem K.M., and Campbell D.A. PCR amplification of mini-exon genes differentiates Trypanosoma cruzi from Trypanosoma rangeli. Mol. Cell Probes 6 (1992) 237-243
23. Nunes L.R., De Carvalho M.R., and Buck G.A. Trypanosoma cruzi strains partition into two groups based on the structure and function of the spliced leader RNA and rRNA gene promoters. Mol. Biochem. Parasitol. 86 (1997) 211-224
24. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
25. Rosas, F., 2000. Cardiomiopatia de Chagas. Medicina 22(53). In: Academia Nacional De Medicina De Colombia, http://www.encolombia.com/medicina/academedicina/220253.htm.
26. Sousa O.E., Samudio F., De Junca C., and Calzada J.E. Molecular characterization of human Trypanosoma cruzi isolates from endemic areas in Panama. Mem. Inst. Oswaldo Cruz 101 (2006) 455-457
27. Souto R.P., Fernandes O., Macedo A.M., Campbell D.A., and Zingales B. DNA markers define two major phylogenetic lineages of Trypanosoma cruzi. Mol. Biochem. Parasitol. 83 (1996) 141-152
28. Thomas S., Westenberger S.J., Campbell D.A., and Sturm N.R. Intragenomic spliced leader RNA array analysis of kinetoplastids reveals unexpected transcribed region diversity in Trypanosoma cruzi. Gene 352 (2005) 100-108
29. Tibayrenc M., Ward P., Moya A., and Ayala F.J. Natural populations of Trypanosoma cruzi, the agent of Chagas disease, have a complex multiclonal structure. Proc. Natl. Acad. Sci. U.S.A. 83 (1986) 115-119
30. Vago A.R., Andrade L.O., Leite A.A., D'Avila Reis D., Macedo A.M., Adad S.J., Tostes, Moreira M.C., Filho G.B., and Pena S.D. Genetic characterization of Trypanosoma cruzi directly from tissues of patients with chronic Chagas disease: differential distribution of genetic types into diverse organs. Am. J. Pathol. 156 (2000) 1805-1809
31. Westenberger S.J., Barnabé C., Campbell D.A., and Sturm N.R. Two hybridization events define the population structure of Trypanosoma cruzi. Genetics 171 (2005) 527-543
32. WHO, 2002 Control of Chagas disease. Second report of the WHO expert commitee. Geneva.
33. Yeo M., Acosta N., Llewellyn M., Sanchez H., Adamson S., Miles G.A., Lopez E., Gonzalez N., Patterson J.S., Gaunt M.W., De Arias A.R., and Miles M.A. Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids. Int. J. Parasitol. 35 (2005) 225-233