Analysis of bacterial community structures in two sewage treatment plants with different sludge properties and treatment performance by nested PCR-DGGE method

Journal of Environmental Sciences

Volumn 19, Issue 1, 2007, Pages 60-66

  LIU, Xin chun ^a   ZHANG, Yu ^a   YANG, Min ^a   WANG, Zhen yu ^a   LV, Wen zhou ^a  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

Author keywords

activated sludge; community analysis; PCR DGGE; sewage; wastewater treatment

Indexed keywords

ACTIVATED SLUDGE PROCESS; BACTERIA; EFFLUENT TREATMENT; ELECTROPHORESIS; SEWAGE SLUDGE;

DENATURING GRADIENT GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION;

SEWAGE TREATMENT PLANTS;

ACTIVATED SLUDGE PROCESS; BACTERIA; EFFLUENT TREATMENT; ELECTROPHORESIS; SEWAGE SLUDGE; SEWAGE TREATMENT PLANTS;

ACTIVATED SLUDGE; BACTERIUM; COMMUNITY STRUCTURE; DOMINANCE; ELECTROKINESIS; MICROBIAL ACTIVITY; PERFORMANCE ASSESSMENT; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; REMOVAL EXPERIMENT; SEWAGE TREATMENT; SPECIES RICHNESS;

ARTICLE; BACTERIUM; CLASSIFICATION; GENETICS; METHODOLOGY; MICROBIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEWAGE;

BACTERIA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEWAGE;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; NITROSOMONADALES;

EID: 34548292939     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(07)60010-2     Document Type: Article

References (33)

1. Boon N., Windt W., Verstraete W., et al. Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants[J]. FEMS Microbiol Ecol 39 (2002) 101-112
2. Curtis T., and Craine N. The comparison of the diversity of activated sludge plants[J]. Wat Sci Tech 37 (1998) 71-78
3. Dice L. Measures of the amount of ecological association between species[J]. Ecology 26 (1945) 297-302
4. Ferris M., Muyzer G., and Ward D. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community[J]. Appl Environ Microbiol 62 (1996) 340-346
5. Heuer H., Krsek M., Baker P., et al. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients[J]. Appl Environ Microbiol 63 (1997) 3233-3241
6. Heuer H., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities[M]. In: van Elsas J.D., Wellington E.M.H., and Trevors J.T. (Eds). Modern soil mmicrobiology (1997), Marcel Dekker, New York
7. Hood M., and Ness G. Survival of Vibrio cholerae and Escherichia coli in estuarine waters and sediments[J]. Appl Environ Microbiol 43 (1982) 578-584
8. Jenkins D., Richard M., and Daigger G. Manual on the causes and control of activated sludge bulking and foaming[M]. 2nd ed. (1993), Lewis Publishers, Michigan
9. Juretschko S., Timmermann G., Schmid M., et al. Combined molecular analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations[J]. Appl Environ Microbiol 64 (1998) 3042-3051
10. Kavanaugh R., and Randall C. Bacterial populations in a biological nutrient removal plant[J]. Water Sci Technol 29 7 (1994) 25-34
11. Kieser T., Bibb M., Buttner M., et al. Preparation and analysis of genomic and plasmid DNA[M]. In: Kieser T., Bibb M.J., Buttner M.J., et al. (Eds). Practical streptomyces genetics (2000), The John Innes Foundation, Norwich, England 161-210
12. Kowalchuk G., Bodelier P., Heilig G., et al. Community analysis of ammonia-oxidizing bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridization[J]. FEMS Microbiol Ecol 27 (1998) 339-350
13. Levantesi C., Beimfohr C., Geurkink B., et al. Filamentous alphaproteobacteria associated with bulking in industrial wastewater treatment plants[J]. Syst Appl Microbiol 27 (2004) 716-727
14. Liao J., Lou I., and de los Reyes III F. Relationship of species-specific filament levels to filamentous bulking in activated sludge[J]. Appl Environ Microbiol 70 (2004) 2420-2428
15. Limpiyakorn T., Shinohara Y., Kurisu F., et al. Communities of ammonia-oxidizing bacteria in activated sludge of various sewage treatment plants in Tokyo[J]. FEMS Microbiol Ecol 54 (2005) 205-217
16. Manz W., Wagner M., Amann R., et al. situ characterization of the microbial consortia active in two wastewater treatment plants[J]. Water Res 28 (1994) 1715-1723
17. Martins A., Pagilla K., Heijnen J., et al. Filamentous bulking sludge-a critical review[J]. Water Res 38 (2004) 793-817
18. Marshall K. Adsorption of microorganisms to soils and sediments[M]. In: Britton G., and Marshall K.C. (Eds). Adsorption of microorganisms to surfaces (1980), Wiley, New York, N.Y. 317-329
19. McCarthy A. Lignocellulose-degrading actinomycetes[J]. FEMS Microbiol Rev 46 (1987) 145-163
20. Miller N., Bryant J., Madsen E., et al. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples[J]. Appl Envir Microbiol 65 (1999) 4715-4724
21. Okabe S., Satoh H., and Watanabe Y. In situ analysis of nitrifying biofilms as determined by in situ hybridisation and the use of microelectrodes[J]. Appl Environ Microbiol 65 (1999) 3182-3191
22. Òvreas L., Forney L., Daae F., et al. Distribution of bacterioplankton in meromictic lake Saelevannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA[J]. Appl Environ Microbiol 63 (1997) 3367-3373
23. Pearson K. On the coefficient of radical likeness[J]. Biometrika 18 (1926) 105-117
24. Phillips C., Harris D., Dollhopf S., et al. Effects of agronomic treatments on structure and function of ammonia-oxidizing communities[J]. Appl Environ Microbiol 66 (2000) 5410-5418
25. Rozen Y., and Belkin S. Survival of enteric bacteria in seawater[J]. FEMS Microbiol Rev 25 (2001) 513-529
26. Schramm A., Beer D., Wagner M., et al. Identification and activity in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor[J]. Appl Environ Microbiol 64 (1998) 3480-3485
27. Seviour E., Williams C., Seviour R., et al. A survey of filamentous bacterial populations from foaming activated sludge plants in the eastern states of Australia[J]. Water Res 24 (1990) 493-498
28. Sokal R., and Michener C. A statistical method for evaluating systematic relationships[J]. Kans Univ Sci Bull 38 (1958) 1409-1438
29. Suzuki M., and Giovannoni S. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR[J]. Appl Environ Microbiol 62 (1996) 625-630
30. Wagner M., Amann R., Lemmer H., et al. Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure[J]. Appl Environ Microbiol 59 (1993) 1520-1525
31. Wagner M., Erhart R., Manz W., et al. Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge[J]. Appl Environ Microbiol 60 (1994) 792-800
32. Wagner M., and Loy A. Bacterial community composition and function in sewage treatment systems[J]. Curr Opin Biotechnol 13 (2002) 218-227
33. Wilderer P., Bungartz H., Lemmer H., et al. Modern scientific methods and their potential in wastewater science and technology[J]. Water Res 36 (2002) 370-393