The presence of multidomain linkers determines the bundle-shape structure of the phycobilisome of the cyanobacterium Gloeobacter violaceus PCC 7421

Photosynthesis Research

Volumn 93, Issue 1-3, 2007, Pages 27-43

  Krogmann, David W ^a   Pérez Gómez, Bertha ^b   Gutiérrez Cirlos, Emma Berta ^c   Chagolla López, Alicia ^d   González De La Vara, Luis ^d   Gómez Lojero, Carlos ^b  

^a PURDUE UNIVERSITY   (United States)

^b DEPARTAMENTO DE FÍSICA   (Mexico)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^d DEPARTAMENTO DE INGENIERÍA GENÉTICA   (Mexico)

Author keywords

Cyanobacterium; Gloeobacter violaceus; Multidomain linkers; Phycobilisome

Indexed keywords

BACTERIAL PROTEIN; PORIN; PROTEIN SUBUNIT;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BIOLOGICAL MODEL; CHEMISTRY; CYANOBACTERIUM; DENSITY GRADIENT CENTRIFUGATION; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYCOBILISOME; PROTEIN TERTIARY STRUCTURE; PROTEIN TRANSPORT; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CENTRIFUGATION, DENSITY GRADIENT; CYANOBACTERIA; GENES, BACTERIAL; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYCOBILISOMES; PORINS; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; PROTEIN TRANSPORT; SEQUENCE ALIGNMENT;

GLOEOBACTER VIOLACEUS; GLOEOBACTER VIOLACEUS PCC 7421;

EID: 34548178794     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-007-9133-9     Document Type: Article

References (49)

1. Adir N (2005) Elucidation of the molecular structures of components of the phycobilisome: reconstructing a giant. Phosynth Res 85:15-32
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped Blast and PSI Blast: a new generation of protein database search programs. Nucleic Acid Res 25:3389-3402
3. Anderson L, Eiserling FA (1986) Asymmetrical core structure in phycobilisomes of the cyanobacterium Synechocystis sp. PCC 6701. J Mol Biol 191:441-451
4. Bennett A, Bogorad L (1973) Complementary chromatic adaptation in a filamentous blue green alga. J Cell Biol 58:419-435
5. Bryant DA (1981) The photoregulated expression of multiple phycocyanin species. Eur J Biochem 119:425-429
6. Bryant DA, Guglielmi G, Tandeau de Marsac N, Castets AM, Cohen-Bazire G (1979) The structure of cyanobacterial phycobilisomes: a model. Arch Microbiol 123:113-127
7. Bryant DA, Cohen-Bazire G, Glazer AN (1981) Characterization of the biliproteins of Gloeobacter violaceus chromophore content of a cyanobacterial phycoerythrin carrying phycourobilin chromophore. Arch Microbiol 129:190-198
8. Bryant DA, Stirewalt VL, Glauser M, Frank G, Sidler W, Zuber H (1991) A small multigene family encodes the rod-core linker polypeptides of Anabaena sp. PCC 7120 phycobilisomes. Gene 107:91-99
9. Capuano V, Braux AS, Tandeau de Marsac N, Houmard J (1991) The anchor polypeptide of cyanobacterial phycobilisomes. J Biol Chem 266:7239-7247
10. Cobley JG, Clark AC, Weerasurya S, Queseda FA, Xiao JY, Bandrapali N, D'Silva I, Thounaojam M, Oda JF, Sumiyoshi T, Chu MH (2002) CpeR is an activator required for expression of the phycoerythrin operon (cpeBA) in the cyanobacterium Fremyella diplosiphon and is encoded in the phycoerythrin linker-polypeptide operon (cpeCDESTR). Mol Microbiol 44:1517-1531
11. Delepelaire P, Chua NH (1979) Lithium dodecyl sulfate, polyacrilamide gel electrophoresis of thylakoid membranes at 4°C; characterizations of two additional chlorophyll a protein complexes. Proc Natl Acad Sci USA 76:111-115
12. de Lorimier R, Bryant DA, Stevens SE (1990) Genetic analysis of a 9 kDa phycocyanin-associated linker polypeptide. Biochim Biophys Acta 1019:29-41
13. Ducret A, Müller SA, Goldie KN, Hefti A, Sidler WA, Zuber H, Engel A (1998) Reconstitution, characterization and mass analysis of the pentacylindrical allophycocyanin core complex from the cyanobacterium Anabaena sp. PCC 7120. J Mol Biol 278:369-388
14. Everroad C, Six C, Partensky F, Tomas JC, Holtzendorff J, Wood AM (2006) Biochemical bases of type IV chromatic adaptation in marine Synechococcus spp. J Bacteriol 188:3345-3356
15. 8.9 on the spectral properties of the phycobiliprotein subunits. Biol Chem Hoppe Seyler 368:353-367
16. Glauser M, Bryant DA, Frank G, Wehrli E, Rusconi SS, Sidler W, Zuber H (1992) Phycobilisome structure in the cyanobacteria Mastigocladus laminosus and Anabaena sp. PCC 7120. Eur J Biochem 205:907-915
17. Glazer AN (1989) Light Guides. J Biol Chem 264:1-4
18. Gómez-Lojero C, Pérez-Gómez B, Prado-Flores G, Krogmann DW, Cárabez-Trejo A, Peña-Díaz A (1997) The phycobilisomes of the cyanobacterium Arthrospira (Spirulina) maxima. Int J Biochem Cell Biol 2910:1191-1205
19. + oxidoreductase with phycobilisomes and phycobilisome substructures of the cyanobacterium Synechococcus sp. strain PCC 7002. Biochemistry 42:13800-13811
20. Gottschalk L, Fischer R, Lottspeich F, Scheer H (1991) Origin of the red shifted absorption in phycocyanin 632 from Mastigocladus laminosus. Photochem Photobiol 54:283-288
21. Gottschalk L, Lottspeich F, Scheer H (1993) Reconstitution of allophycocyanin from Mastigocladus laminosus with isolated linker polypeptide. Photochem Photobiol 58:761-767
22. Grossman AR (2003) A molecular understanding of complementary chromatic adaptation. Photosynth Res 76:207-215
23. Grossman AR, Bhaya D, He Q (2001) Tracking the light environment by cyanobacteria and the dynamic nature of light harvesting. J Biol Chem 276:11449-11452
24. Guglielmi G, Cohen-Bazire G, Bryan DA (1981) The Structure of Gloeobacter violaceus and its phycobilisomes. Arch Microbiol 129:181-189
25. Gutiérrez-Cirlos EB, Pérez-Gómez B, Krogmann DW, Gómez-Lojero C (2006) The phycocyanin-associated rod linker proteins of the phycobilisome of Gloeobacter violaceus PCC 7421 contain unusually located rod-capping domains. Biochim Biophys Acta 1757:130-134
26. Isono T, Katoh T (1987) Subparticles of Anabaena phycobilisomes II. Molecular assembly of allophycocyanin cores in reference to "anchor" protein. Arch Biochem Biophys 256:317-324
27. Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 3:109-136
28. Kaneko T, Nakamura Y, Wolk CP, Kuritz T, Sasamoto S, Watanabe A, Iriguchi M, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakazaki N, Shimpo S, Sugimoto M, Takazawa M, Yamada M, Yasuda M, Tabata S (2001) Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res 8:205-213
29. Liu LN, Chen XL, Zhang YZ, Zhou BC (2005) Characterization, structure and function of linker polypeptides in phycobilisomes of cyanobacteria and red algae: an overview. Biochim Biophys Acta 1708:133-142
30. Lundell DJ, Glazer AN (1983) Molecular architecture of a light-harvesting antenna. Core substructure in Synechococcus 6301 phycobilisomes two new allophycocyanin and allophycocyanin B complexes. J Biol Chem 258:902-908
31. MacColl R (1998) Cyanobacterial phycobilisomes. J Struct Biol 124:311-334
32. Martin RG, Ames BN (1961) A method for determining the sedimentation behavior of enzymes: application to protein mixtures. J Biol Chem 236:1372-1378
33. Nakamura Y, Kaneko T, Sato S, Ikeuchi M, Katoh H, Sasamoto S, Watanabe A, Iriguchi M, Kawashima K, Kimura T, Kishida Y, Kiyokawa Ch, Kohara M, Matsumoto M, Matsuno A, Nakazaki N, Shimpo S, Sugimoto M, Takeuchi Ch, Yamada M, Tabata S (2002) Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res 9:123-130
34. Nakamura Y, Kaneko T, Sato S, Mimuro M, Miyashita H, Tsuchiya T, Sasamoto S, Watanabe A, Kawashima K, Kishida Y, Kiyokawa Ch, Kohara M, Matsumoto M, Matsuno A, Nakazaki N, Shimpo S, Takeuchi Ch, Yamada M, Tabata S (2003a) Complete genome structure of Gloeobacter violaceus PCC7421, a cyanobacterium that lacks thylakoids. DNA Res 10:137-145
35. Nakamura Y, Kaneko T, Sato S, Mimuro M, Miyashita H, Tsuchiya T, Sasamoto S, Watanabe A, Kawashima K, Kishida Y, Kiyokawa Ch, Kohara M, Matsumoto M, Matsuno A, Nakazaki N, Shimpo S, Takeuchi Ch, Yamada M, Tabata S (2003b) Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylacoids (Supplement). DNA Res 10:181-201
36. Palenik B, Brahamsha B, Larimer FW, Land M, Hauser L, Chain P, Lamerdin J, Regala W, Allen EE, McCarren J, Paulsen I, Dufresne A, Partensky F, Webb EA, Waterbury J (2003) The genome of a motile marine Synechococcus. Nature 424:1037-1042
37. 4. Plant Physiol 92:358-362
38. 7.8, from phycobilisomes of Mastigocladus laminosus. Proc Natl Acad Sci USA 96:1363-1368
39. Rippka R, Waterbury J, Cohen-Bazire G (1974) A cyanobacterium which lacks thylakoids. Arch Microbiol 100:419-436
40. Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111:1-61
41. Schägger H, von Jagow G (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem 166:368-379
42. + oxidoreductase in cyanobacteria: cloning and sequence of the petH gene of Synechococcus sp. PCC 7002 and studies on the gene product. Biochemistry 31:3092-3102
43. Sidler WA (1994) Phycobilisome and phycobiliprotein structures. In: Bryant DA (ed) The molecular biology of cyanobacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 139-216
44. Six C, Thomas JC, Thion L, Lemoine Y, Zal F, Partensky F (2005) Two novel phycoerythrin-associated linker proteins in the marine cyanobacterium Synechococcus sp. strain WH8102. J Bacteriol 187:1685-1694
45. Tandeau de Marsac N (1977) Ocurrence and nature of chromatic adaptation in cyanobacteria. J Bacteriol 130:82-91
46. Tandeau de Marsac N (2003) Phycobiliproteins and phycobilisomes: the early observations. Photosynth Res 76:197-205
47. Tandeau de Marsac N, Mazel D, Damerval T, Guglielmi G, Capuano V, Houmard J (1988) Photoregulation of gene expression in the filamentous cyanobacterium Calothrix sp. PCC 7601 light-harvesting complexes and cell differentiation. Photosynth Res 18:99-132
48. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
49. + reductase bound to the phycobilisomes of Synechocystis. EMBO J 18:4128-4136