Biochemical bases of type IV chromatic adaptation in marine Synechococcus spp.

Journal of Bacteriology

Volumn 188, Issue 9, 2006, Pages 3345-3356

  Everroad, Craig ^a   Six, Christophe ^b   Partensky, Frédéric ^b   Thomas, Jean Claude ^c   Holtzendorff, Julia ^b   Wood, A Michelle ^a  

^a UNIVERSITY OF OREGON   (United States)

^b STATION BIOLOGIQUE DE ROSCOFF   (France)

^c ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PHYCOCYANIN; PHYCOERYTHRIN; PHYCOERYTHROBILIN; PHYCOUROBILIN; POLYPEPTIDE; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIOPLANKTON; BACTERIUM ISOLATE; CHROMATOPHORE; ENZYME ACTIVITY; LIGHT; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SYNECHOCOCCUS;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; LIGHT; LIGHT-HARVESTING PROTEIN COMPLEXES; LYASES; MOLECULAR SEQUENCE DATA; PHYCOBILINS; PHYCOERYTHRIN; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; SYNECHOCOCCUS; TETRAPYRROLES; UROBILIN;

BACTERIA (MICROORGANISMS); CYANOBACTERIA; SYNECHOCOCCUS;

EID: 33646231049     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.9.3345-3356.2006     Document Type: Article

References (47)

1. Alberte, R. S., A. M. Wood, T. A. Kursar, and R. R. L. Guillard. 1984. Novel phycoerythrins in marine Synechococcus spp. Plant Physiol. 75:732-739.
2. Anderson, L. K., M. C. Rayner, and F. A. Eiserling. 1984. Ultra-violet mutagenesis of Synechocystis sp. 6701: mutations in chromatic adaptation and phycobilisome assembly. Arch. Microbiol. 138:237-243.
3. Brahamsha, B. 1996. A genetic manipulation system for oceanic cyanobacteria of the genus Synechococcus. Appl. Environ. Microbiol. 62:1747-1751.
4. Campbell, L., and R. Iturriaga. 1988. Identification of Synechococcus spp. in the Sargasso Sea by immunofluorescence and fluorescence excitation spectroscopy performed on individual cells. Limnol. Oceanogr. 33:1196-1201.
5. Conley, P. B., P. G. Lemaux, and A. Grossman. 1988. Molecular characterization and evolution of sequences encoding light-harvesting components in the chromatically adapting cyanobacterium Fremyella diplosiphon. J. Mol. Biol. 199:447-465.
6. de Lamballerie, X., C. Zandotti, C. Vignoli, C. Bollet, and P. de Micco. 1992. A one-step microbial DNA extraction method using "Chelex 100" suitable for gene amplification. Res. Microbiol. 143:785-790.
7. Dickey, T., J. Marra, D. E. Sigurdson, R. A. Weller, C. S. Kinkade, E. S. Zedler, J. D. Wiggert, and C. Langdon. 1998. Seasonal variability of biooptical and physical properties in the Arabian Sea: October 1994-October 1995. Deep-Sea Res. Part II 45:2001-2025.
8. Fuller, N. J., D. Marie, F. Partensky, D. Vaulot, A. F. Post, and D. J. Scanlan. 2003. Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Appl. Environ. Microbiol. 69:2430-2443.
9. Glazer, A. N. 1999. Cyanobacterial photosynthetic apparatus: an overview. Bull. Inst. Oceanogr. Monaco 19:419-434.
10. Grossman, A. R. 2003. A molecular understanding of complementary chromatic adaptation. Photosynth. Res. 76:207-215.
11. Grossman, A. R., D. Bhaya, and Q. F. He. 2001. Tracking the light environment by cyanobacteria and the dynamic nature of light harvesting. J. Biol. Chem. 276:11449-11452.
12. Guillard, R. R., and J. H. Ryther. 1962. Studies of marine diatoms. I. Cyclotella nana Hustedt and Detonula confervacea (cleve) Gran. Can. J. Microbiol. 8:229-239.
13. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
14. Herdman, M., R. W. Castenholz, J. B. Waterbury, and R. Rippka. 2001. Form-genus XIII. Synechococcus, p. 508-512. In D. R. Boone and R. W. Castenholz (ed.), Bergey's manual of systematic bacteriology, 2nd ed., vol. 1. Springer-Verlag, New York, N.Y.
15. Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
16. Jeffrey, S. W., R. F. C. Mantoura, and S. W. Wright. 1997. Phytoplankton pigments in oceanography. Unesco Publishing, Paris, France.
17. Jerlov, N. 1976. Marine optics. Elsevier, Amsterdam, The Netherlands.
18. Klotz, A. V., and A. N. Glazer. 1985. Characterization of the bilin attachment sites in R-phycoerythrin. J. Biol. Chem. 260:4856-4863.
19. Li, W. K. W. 1994. Primary productivity of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnol. Oceanogr. 39:169-175.
20. Martin, S. A. 2004. An introduction to ocean remote sensing. Cambridge University Press, Cambridge, United Kingdom.
21. Mazel, D., J. Houmard, and N. Tandeau de Marsac. 1988. A multigene family in Calothrix sp. PCC 7601 encodes phycocyanin, the major component of the cyanobacterial light harvesting antenna. Mol. Gen. Genet. 211:296-304.
22. Miller, S. R., and R. W. Castenholz. 2000. Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus. Appl. Environ. Microbiol. 66:4222-4229.
23. Nübel, U., F. Garcia-Pichel, and G. Muyzer. 1997. PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl. Environ. Microbiol. 63:3327-3332.
24. Olson, R. J., E. R. Zettler, E. V. Armbrust, and S. W. Chisholm. 1990. Pigment, size and distribution of Synechococcus in the North Atlantic and Pacific oceans. Limnol. Oceanogr. 35:45-58.
25. Ong, L. J., and A. N. Glazer. 1991. Phycoerythrins of marine unicellular cyanobacteria. I. Bilin types and locations and energy transfer pathways in Synechococcus spp. phycoerythrins. J. Biol. Chem. 266:9515-9527.
26. Ong, L. J., and A. N. Glazer. 1987. R-phycocyanin II, a new phycocyanin occurring in marine Synechococcus species. J. Biol. Chem. 262:6323-6327.
27. Palenik, B. 2001. Chromatic adaptation in marine Synechococcus strains. Appl. Environ. Microbiol. 67:991-994.
28. Partensky, F., J. Blanchot, and D. Vaulot. 1999. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. Bull. Inst. Oceanogr. Monaco 19:457-475.
29. 2-containing cyanobacterium (oxyphotobacteria). Int. J. Syst. Evol. Microbiol. 50:1833-1847.
30. Rodriguez, F., J. F. Oliver, A. Marin, and J. R. Medina. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142:485-501.
31. Roessler, C. S., and M. J. Perry. 1995. In situ phytoplankton absorption, fluorescence emission, and particulate backscattering spectra determined from reflectance. J. Geophys. Res. 100:13279-13294.
32. Six, C., J. C. Thomas, B. Brahamsha, Y. Lemoine, and F. Partensky. 2004. Photophysiology of the marine cyanobacterium Synechococcus sp. WH8102, a new model organism. Aquat. Microb. Ecol. 35:17-29.
33. Six, C., J.-C. Thomas, L. Thion, Y. Lemoine, F. Zal, and F. Partensky. 2005. Two novel phycoerythrin-associated linker proteins in the marine cyanobacterium Synechococcus sp. strain WH8102. J. Bacteriol. 187:1685-1694.
34. Six, C., A. Z. Worden, F. Rodriguez, H. Moreau, and F. Partensky. 2005. New insights into the nature and phylogeny of prasinophyte antenna proteins: Ostreococcus tauri, a case study. Mol. Biol. Evol. 22:2217-2230.
35. Storf, M., A. Parbel, M. Meyer, B. Strohmann, H. Scheer, M. G. Deng, M. Zheng, M. Zhou, and K. H. Zhao. 2001. Chromophore attachment to biliproteins: specificity of PecE/PecF, a lyase-isomerase for the photoactive 3(1)-Cys-alpha 84-phycoviolobilin chromophore of phycoerythrocyanin. Biochemistry 40:12444-12456.
36. Tandeau de Marsac, N. 1977. Occurrence and nature of chromatic adaptation in cyanobacteria. J. Bacteriol. 130:82-91.
37. Tandeau de Marsac, N., and J. Houmard. 1988. Complementary chromatic adaptation: physiological conditions and action spectra. Methods Enzymol. 167:318-328.
38. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
39. Toledo, G., B. Palenik, and B. Brahamsha. 1999. Swimming marine Synechococcus strains with widely different photosynthetic pigment ratios form a monophyletic group. Appl. Environ. Microbiol. 65:5247-5251.
40. Vaulot, D. 1989. CYTOPC: processing software for flow cytometric data. Signal Noise 2:8.
41. Waterbury, J., and J. M. Willey. 1988. Isolation and growth of marine planktonic cyanobacteria. Methods Enzymol. 167:105-112.
42. Waterbury, J. B., S. W. Watson, F. W. Valois, and D. G. Franks. 1986. Biological and ecological characterization of the marine unicellular cyanobacterium Synechococcus. Can. Bull. Fish. Aquat. Sci. 472:71-120.
43. Wilbanks, S. M., and A. N. Glazer. 1993. Rod structure of a phycoerythrin II-containing phycobilisome. II. Complete sequence and bilin attachment site of a phycoerythrin γ subunit. J. Biol. Chem. 268:1236-1241.
44. Wood, A. M. 1985. Adaptation of photosynthetic apparatus of marine ultraphytoplankton to natural light fields. Nature 316:253-255.
45. Wood, A. M., R. C. Everroad, and L. M. Wingard. 2005. Measuring growth rates in microalgal cultures, p. 269-286. In R. A. Anderson (ed.), Algal culturing techniques. Elsevier Academic Press, Burlington, Mass.
46. Wood, A. M., P. K. Horan, K. Muirhead, D. A. Phinney, C. M. Yentsch, and J. M. Waterbury. 1985. Discrimination between types of pigments in marine Synechococcus spp. by scanning spectroscopy, epifluorescence microscopy, and flow cytometry. Limnol. Oceanogr. 30:1303-1315.
47. Wood, A. M., D. A. Phinney, and C. S. Yentsch. 1998. Water column transparency and the distribution of spectrally distinct forms of phycoerythrin-containing organisms. Mar. Ecol. Prog. Ser. 162:25-31.