Improvement of spoligotyping with additional spacer sequences for characterization of Mycobacterium bovis and M. caprae isolates from Spain

Tuberculosis

Volumn 87, Issue 5, 2007, Pages 437-445

  Javed, M Tariq ^a   Aranaz, Alicia ^a   de Juan, Lucía ^a   Bezos, Javier ^a   Romero, Beatriz ^a   Álvarez, Julio ^a   Lozano, Cristina ^a   Mateos, Ana ^a   Domínguez, Lucas ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

Mycobacterium bovis; Mycobacterium caprae; Spacers; Spoligotyping

Indexed keywords

SPACER DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE TYPING; BACTERIUM ISOLATION; CONTROLLED STUDY; DISCRIMINANT ANALYSIS; GENE SEQUENCE; GENETIC VARIABILITY; INTERMETHOD COMPARISON; MYCOBACTERIUM; MYCOBACTERIUM BOVIS; MYCOBACTERIUM CAPRAE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL; SPAIN;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CATTLE; DEER; DNA TRANSPOSABLE ELEMENTS; GOATS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; OLIGONUCLEOTIDES; SPAIN; SUS SCROFA; TUBERCULOSIS;

EID: 34548170788     PISSN: 14729792     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tube.2007.04.002     Document Type: Article

References (56)

1. van der Zanden A.G., Kremer K., and Schouls L.M. Improvement of differentiation and interpretability of spoligotyping for Mycobacterium tuberculosis complex isolates by introduction of new spacer oligonucleotides. J Clin Microbiol 40 (2002) 4628-4639
2. De Lisle G.W., Mackintosh C.G., and Bengis R.G. Mycobacterium bovis in free-living and captive wildlife, including farmed deer. Rev Sci Tech Off Int Epiz 20 (2001) 86-111
3. O'Reilly L.M., and Daborn C.J. The epidemiology of Mycobacterium bovis infections in animals and man: a review. Tuberc Lung Dis 76 Suppl. 1 (1995) 1-46
4. Corner L.A.L. The role of wild animal populations in the epidemiology of tuberculosis in domestic animals: how to assess the risk. Vet Microbiol 112 (2006) 303-312
5. De Lisle G.W., Bengis R.G., Schmitt S.M., and O'Brien D.J. Tuberculosis in free-ranging wildlife: detection, diagnosis and management. Rev Sci Tech Off Int Epiz 21 (2002) 317-334
6. Biet F., Boschiroli M.L., Thorel M.F., and Guilloteau L.A. Zoonotic aspects of Mycobacterium bovis and Mycobacterium avium-intracellulare complex (MAC). Vet Res 36 (2005) 411-436
7. Cosivi O., Grange J.M., Daborn C.J., et al. Zoonotic tuberculosis due to Mycobacterium bovis in developing countries. Emerg Infect Dis 4 (1998) 59-70
8. Dalovisio J.R., Stretter M., and Mikota S.W. Rhinoceros' rhinorrhea: cause of an outbreak of infection due to airborne Mycobacterium bovis in zookeepers. Clin Infect Dis 15 (1992) 598-600
9. Fanning A., and Edwards S. Mycobacterium bovis infection in human beings in contact with elk (Cervus elaphus) in Alberta, Canada. Lancet 338 (1991) 1253-1255
10. Georghiou P., Patel A.M., and Konstantinos A. Mycobacterium bovis as an occupational hazard in abattoir workers. Aust N Z J Med 19 (1989) 409-410
11. Grange J.M., and Yates M.D. Zoonotic aspects of Mycobacterium bovis infection. Vet Microbiol 40 (1994) 137-151
12. Aranaz A., Liébana E., Gómez-Mampaso E., et al. Mycobacterium tuberculosis subsp. caprae subsp. nov.: a taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain. Int J Syst Bacteriol 49 (1999) 1263-1273
13. Erler W., Martin G., Sachse K., et al. Molecular fingerprinting of Mycobacterium bovis subsp. caprae isolates from central Europe. J Clin Microbiol 42 (2004) 2234-2238
14. Machackova M., Matlova L., Lamka J., et al. Wild boar (Sus scrofa) as a possible vector of mycobacterial infections: review of literature and critical analysis of data from Central Europe between 1983 to 2001. Vet Med Czech 48 (2004) 51-65
15. Prodinger W.M., Brandstätter A., Naumann N., et al. Characterization of Mycobacterium caprae by mycobacterial interspersed repetitive units (MIRU) for epidemiological and phylogenetic purposes. J Clin Microbiol 43 (2005) 4984-4992
16. Kubica T., Rusch-Gerdes S., and Niemann S. Mycobacterium bovis subsp. caprae caused one-third of human M. bovis-associated tuberculosis cases reported in Germany between 1999 and 2001. J Clin Microbiol 41 (2003) 3070-3077
17. Prodinger W.M., Eigentler A., Allerberger F., Schonbauer M., and Glawischnig W. Infection of red deer, cattle, and humans with Mycobacterium bovis subsp. caprae in western Austria. J Clin Microbiol 40 (2002) 2270-2272
18. Brosch R., Gordon S.V., Marmiesse M., et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Natl Acad Sci USA 99 (2002) 3684-3689
19. Filliol I., Driscoll J.R., van Soolingen D., et al. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J Clin Microbiol 41 (2003) 1963-1970
20. van Soolingen D. Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements. J Int Med 249 (2001) 1-26
21. Sola C., Filliol I., Legrand E., et al. Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics. Infect Genet Evol 3 (2003) 125-133
22. Bifani P.J., Mathema B., Liu Z., et al. Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology. JAMA 282 (1999) 2321-2327
23. Kamerbeek J., Schouls L., Kolk A., et al. Rapid detection and simultaneous strain differentiation of Mycobacterium tuberculosis for diagnosis and tuberculosis control. J Clin Microbiol 35 (1997) 907-914
24. Groenen P.M.A., Bunschoten A.E., van Soolingen D., and van Embden J.D.A. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis: application of strain differentiation by a novel typing method. Mol Microbiol 10 (1993) 1057-1065
25. Fang Z., Morrison N., Watt B., Doig C., and Forbes K J. IS6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains. J Bacteriol 180 (1998) 2102-2109
26. van Embden J.D., van Gorkom T., Kremer K., Jansen R., Der Zeijst B.A., and Schouls L.M. Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria. J Bacteriol 182 (2000) 2393-2401
27. Aranaz A., Liébana E., Mateos A., et al. Spacer oligonucleotide typing of Mycobacterium bovis strains from cattle and other animals: a tool for studying epidemiology of tuberculosis. J Clin Microbiol 34 (1996) 2734-2740
28. Cousins D., Williams S., Liébana E., et al. Evaluation of four DNA typing techniques in epidemiological investigations of bovine tuberculosis. J Clin Microbiol 36 (1998) 168-178
29. Costello E., O'Grady D., Flynn O., et al. Study of restriction fragment length polymorphism analysis and spoligotyping for epidemiological investigation of Mycobacterium bovis infection. J Clin Microbiol 37 (1999) 3217-3222
30. Roring S., Brittain D., Bunschoten A.E., et al. Spacer oligotyping of Mycobacterium bovis isolates compared to typing by restriction fragment length polymorphism using PGRS, DR and IS6110 probes. Vet Microbiol 61 (1998) 111-120
31. Zumarraga M., Martín C., Samper S., et al. Usefulness of spoligotyping in molecular epidemiology of Mycobacterium bovis related infections in South America. J Clin Microbiol 37 (1999) 296-303
32. Kremer K., Van Soolingen D., Frothingham R., et al. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 37 (1999) 2607-2618
33. Kremer K., Arnold C., Cataldi A., et al. Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains. J Clin Microbiol 43 (2005) 5628-5638
34. Skuce R.A., McDowell S.W., Mallon T.R., et al. Discrimination of isolates of Mycobacterium bovis in Northern Ireland on the basis of variable numbers of tandem repeats (VNTRs). Vet Rec 157 (2005) 501-504
35. Caimi K., Romano M.I., Alito A., Zumarraga M., Bigi F., and Cataldi A. Sequence analysis of the direct repeat region in Mycobacterium bovis. J Clin Microbiol 39 (2001) 1067-1072
36. Brudley K., Gutiérrez M.C., Vincent V., et al. Mycobacterium africanum genotyping using novel spacer oligonucleotides in the direct repeat locus. J Clin Microbiol 42 (2004) 5053-5057
37. Kaufhold A., Podbielski A., Baumgarten G., Blokpoel M., Top J., and Schouls L. Rapid typing of group A streptococci by the use of DNA amplification and non-radioactive allele-specific oligonucleotide probes. FEMS Microbiol Lett 119 (1994) 19-25
38. Aranaz A., de Juan L., Montero N., et al. Bovine tuberculosis (Mycobacterium bovis) in wildlife in Spain. J Clin Microbiol 42 (2004) 2602-2608
39. Hunter P. Reproducibility and indices of discriminatory power of microbial typing methods. J Clin Microbiol 28 (1990) 1903-1905
40. SAS Institute Inc. Software for data analysis, release 9.1. Cary, NC: SAS Institute Inc; 2002-2003.
41. LISREL 8.7. 7383 N. Lincoln Avenue, Suite 100 Lincolnwood, IL 60712-1747 USA: Scientific Software International Inc.; 2005.
42. Aranaz A., Liébana E., Mateos A., Domínguez L., and Cousins D. Restriction fragment length polymorphism and spacer oligonucleotide typing: a comparative analysis of fingerprinting strategies for Mycobacterium bovis. Vet Microbiol 61 (1998) 311-324
43. Haddad N., Ostyn A., Karoui C., et al. Spoligotype diversity of Mycobacterium bovis strains isolated in France from 1979 to 2000. J Clin Microbiol 39 (2001) 3623-3632
44. Gortázar C., Vicente J., Samper S., et al. Molecular characterization of Mycobacterium tuberculosis complex isolates from wild ungulates in south-central Spain. Vet Res 36 (2005) 43-52
45. TatocParra A., Fernández-Llario P., Tatoc A., et al. Epidemiology of Mycobacterium bovis infections of pigs and wild boars using a molecular approach. Vet Microbiol 97 (2003) 123-133
46. Serraino A., Marchetti G., Sanguinetti V., et al. Monitoring of transmission of tuberculosis between wild boars and cattle: genotypical analysis of strains by molecular epidemiology techniques. J Clin Microbiol 37 (1999) 2766-2771
47. Roring S., Scott A., Brittain D., et al. Development of variable-number tandem repeat typing of Mycobacterium bovis: comparison of results with those obtained by using existing exact tandem repeats and spoligotyping. J Clin Microbiol 40 (2002) 2126-2133
48. Allix C., Walravens K., Saegerman C., Godfroid J., Supply P., and Fauville-Dufaux M. Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment length polymorphism analysis and spoligotyping. J Clin Microbiol 44 (2006) 1951-1962
49. Aranaz A., Cousins D., Mateos A., and Domínguez L. Elevation of Mycobacterium tuberculosis subsp. caprae Aranaz et al. 1999 to species rank as Mycobacterium caprae comb. nov., sp. Nov. Int J Syst Evol Microbiol 53 (2003) 1785-1789
50. Cousins D.V., Bastida R., Cataldi A., et al. Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex: Mycobacterium pinnipedii sp. Nov. Int J Syst Evol Microbiol 53 (2003) 1305-1314
51. Niemann S., Kubica T., Bange F.C., et al. The species Mycobacterium africanum in the light of new molecular markers. J Clin Microbiol 42 (2004) 3958-3962
52. Sola C., Rastogi N., Gutierrez M.C., et al. Is Mycobacterium africanum subtype II (Uganda I and Uganda II) a genetically well-defined subspecies of the Mycobacterium tuberculosis complex. J Clin Microbiol 41 (2003) 1345-1348
53. Van Soolingen D., Hoogenboezem T., de Haas P.E.W., et al. A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canettii: characterization of an exceptional isolate from Africa. Int J Syst Bacteriol 47 (1997) 1236-1245
54. Van Soolingen D., van der Zanden A.G.M., de Haas P.E.W., et al. Diagnosis of Mycobacterium microti infections among humans by using novel genetic markers. J Clin Microbiol 36 (1998) 1840-1845
55. Viana-Nero C., Gutiérrez C., Sola C., et al. Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA repeats. J Clin Microbiol 39 (2001) 57-65
56. Dale J.W., Brittain D., Cataldi A.A., et al. Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature. Int J Tuberc Lung Dis 5 (2001) 216-219