Restriction fragment length polymorphism and spacer oligonucleotide typing: A comparative analysis of fingerprinting strategies for Mycobacterium bovis

Veterinary Microbiology

Volumn 61, Issue 4, 1998, Pages 311-324

  Aranaz, Alicia ^a   Liébana, Ernesto ^a   Mateos, Ana ^a   Domínguez, Lucas ^a   Cousins, Debby ^b  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^b DEPARTMENT OF AGRICULTURE AND FOOD WESTERN AUSTRALIA   (Australia)

Author keywords

DR; IS1081; IS6110; Mycobacterium bovis; PGRS; RFLP; Spoligotyping

Indexed keywords

ANALYTIC METHOD; ANIMAL CELL; ARTICLE; BACTERIUM ISOLATION; CATTLE; COMPARATIVE STUDY; DNA FINGERPRINTING; GENETIC MARKER; MYCOBACTERIUM BOVIS; NONHUMAN; OLIGONUCLEOTIDE PROBE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TECHNIQUE;

ANIMALS; ANIMALS, DOMESTIC; ANIMALS, WILD; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; CATS; CATTLE; DNA FINGERPRINTING; DNA PRIMERS; DNA, RIBOSOMAL; GENETIC MARKERS; MYCOBACTERIUM BOVIS; OLIGONUCLEOTIDE PROBES; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SWINE; TUBERCULOSIS, BOVINE;

EID: 0032522184     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1135(98)00192-8     Document Type: Article

References (31)

1. Aranaz A., Liébana E., Mateos A., Domínguez L., Vidal D., Domingo M., González O., Rodriguez-Ferri E.F., Bunschoten A.E., van Embden J.D.A., Cousins D. Spacer oligonucleotide typing of Mycobacterium bovis strains from cattle and other animals: A tool for studying epidemiology of tuberculosis. J. Clin. Microbiol. 34:1996;2734-2740.
2. Collins D.M., Stephens D.M. Identification of an insertion sequence, IS1081, in Mycobacterium bovis. FEMS Microbiol. Lett. 83:1991;11-16.
3. Collins D.M., Erasmuson S.K., Stephens D.M., Yates G.F., de Lisle G.W. DNA fingerprinting of Mycobacterium bovis strains by restriction fragment analysis and hybridization with insertion elements IS1081 and IS6110. J. Clin. Microbiol. 31:1993;1143-1147.
4. Corner L.A., Barrett L.H., Lepper A.W.D., Lewis V., Pearson C.W. A survey of mycobacterioses of feral pigs in the Northern Territory. Aust. Vet. J. 57:1981;537-542.
5. Cousins, D.V., Williams, S.N., Reuter, R., Forshaw, D., Chadwick, B., Coughran, D., Collins, P., Gales, N., 1993a. Tuberculosis in wild seals and characterisation of the seal bacillus, Aust. Vet. J. 70, 92-97.
6. Cousins, D.V., Williams, S.N., Ross, B.C., Ellis, T.M., 1993b. Use of a repetitive element isolated from Mycobacterium tuberculosis in hybridisation studies with Mycobacterium bovis: A new tool for epidemiological studies of bovine tuberculosis, Vet. Microbiol. 37, 1-17.
7. de Lisle G.M. Mycobacterial infections in pigs. Surveillance. 21:1994;23-25.
8. Dwyer B., Jackson K., Raios K., Sievers A., Wilshire E., Ross B. DNA restriction fragment analysis to define an extended cluster of tuberculosis in homeless men and their associates. J. Infect. Dis. 167:1993;490-494.
9. Grange, J.M., Yates, M.D., 1994. Guidelines for speciation within the Mycobacterium tuberculosis complex, World Health Organisation/Veterinary Public Health Unit, WHO, Zoon./94.174.
10. Gutiérrez M., Samper S., Gavigan J.A., Garcia J.F., Martín C. Differentiation by molecular typing of Mycobacterium bovis strains causing tuberculosis in cattle and goats. J. Clin. Microbiol. 33:1995;2953-2956.
11. Hermans P.W.M., van Soolingen D., Bik E.M., de Haas P.E.W., Dale J.W., van Embden J.D.A. The insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect. Immun. 59:1991;2695-2705.
12. Hermans P.W.M., van Soolingen D., Dale J.W., Schuitema A.R.J., McAdam R.A., Catty D., van Embden J.D.A. Insertion element IS986 from Mycobacterium tuberculosis: A useful tool for the diagnosis and epidemiology of tuberculosis. J. Clin. Microbiol. 28:1990;2051-2058.
13. Kamerbeek J., Schouls L., Kolk A., van Agterveld M., Bunschoten A., van Soolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 35(4):1997;907-914.
14. Liébana E., Aranaz A., Gonzalez O., Domingo M., Vidal D., Mateos A., Rodríguez-Ferri E.F., Domínguez L., Cousins D. The insertion element IS6110 is a useful tool for DNA fingerprinting of Mycobacterium bovis isolates from cattle and goats in Spain. Vet. Microbiol. 54:1997;223-233.
15. Liébana E., Aranaz A., Francis B., Cousins D. Assessment of genetic markers for species differentiation within the Mycobacterium tuberculosis complex. J. Clin. Microbiol. 34:1996;933-938.
16. Mazurek G.H., Cave M.D., Eisenach K.D., Wallace R.J.J., Bates J.H., Crawford J.T. Chromosomal DNA fingerprint patterns produced with IS6110 as strain-specific markers for epidemiologic study of tuberculosis. J. Clin. Microbiol. 29:1991;2030-2033.
17. McAdam R.A., Hermans P.W.M., van Soolingen D., Zainuddin Z.F., Catty D., van Embden J.D.A., Dale J.W. Characterization of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family. Mol. Microbiol. 4:1990;1607-1613.
18. O'Reilly L.M., Daborn C.J. The epidemiology of Mycobacterium bovis infections in animals and man: A review. Tub. and Lung Dis. 76(Suppl. 1):1995;1-46.
19. Perumaalla V.S., Adams L.G., Payeur J.B., Jarnagin J.L., Baca D.R., Güemes F.S., Ficht T.A. Molecular epidemiology of Mycobacterium bovis in Texas and Mexico. J. Clin. Microbiol. 34:1996;2066-2071.
20. Romano M.I., Alito A., Fisanotti J.C., Bigi F., Kantor I., Cicuta M.E., Cataldi A. Comparison of different genetic markers for molecular epidemiology of bovine tuberculosis. Vet Microbiol. 50:1996;59-71.
21. Ross B.C., Raios K., Jackson K., Dwyer B. Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiologic tool. J. Clin. Microbiol. 30:1992;942-946.
22. Skuce R.A., Brittain D., Hughes M.S., Neil S.D. Differentiation of Mycobacterium bovis isolates by DNA typing. J. Clin. Microbiol. 34:1996;2469-2474.
23. Small P.M., Moss A. Molecular epidemiology and the new tuberculosis. Infect. Agents Dis. 2:1993;132-138.
24. Small, P.M., van Embden, J.D.A., 1994. Molecular epidemiology of tuberculosis. In: Blomm B.R. (Ed.), Tuberculosis: Pathogenesis, protection and control, American Society for Microbiology. Washington, DC, pp. 569-582.
25. Thierry D., Cave M.D., Eisenach K.D., Crawford J.T., Bates J.H., Gicquel B., Guesdon J.L. IS6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res. 18:1990;188.
26. van Embden J.D.A., Cave D., Crawford J.T., Dale J.W., Eisenach K.D., Gicquel B., Hermans P., Martín C., McAdam R., Shinnick T.M., Small P.M. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: Recommendations for a standardized methodology. J. Clin. Microbiol. 31:1993;406-409.
27. van Soolingen D., de Haas P.E.W., Haagsma J., Eger T., Hermans P.W.M., Ritacco V., Alito A., Embden J.D.A. Use of various genetic markers in differentiation of Mycobacterium bovis strains from animals and humans and for studying epidemiology of bovine tuberculosis. J. Clin. Microbiol. 32:1994;2425-2433.
28. van Soolingen D., de Haas P.E.W., Hermans P.W.M., Groenen P.M.A., van Embden J.D.A. Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis. J. Clin. Microbiol. 31:1993;1987-1995.
29. van Soolingen D., Hermans P.W.M., de Haas P.E.W., Soll D.R., van Embdem J.D.A. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polimorphism as a tool in the epidemiolgy of tuberculosis. J. Clin. Microbiol. 29:1991;2578-2586.
30. Wakelin C.A., Churchman O.T. Prevalence of bovine tuberculosis in feral pigs in Central Otago. Surveillance. 18:1991;19-20.
31. Wilton S., Cousins D. Detection and identification of multiple mycobacterial pathogens by DNA amplification in a single tube. PCR: Meth. Appl. 1:1992;269-273.