The phylogeography of palm cockatoos, Probosciger aterrimus, in the dynamic Australo-Papuan region

Journal of Biogeography

Volumn 34, Issue 9, 2007, Pages 1534-1545

  Murphy, Stephen A ^a,b   Double, Michael C ^a   Legge, Sarah M ^a,b  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b AUSTRALIAN WILDLIFE CONSERVANCY   (Australia)

Author keywords

Aru Islands; Australia; Conservation biogeography; New Guinea; Palm cockatoo; Parrot taxonomy; Probosciger; Torres Strait; Vogelkop; Weyland Range

Indexed keywords

ANCESTRY; BIRD; CLADISTICS; CONSERVATION STATUS; DIVERGENCE; GENETIC ISOLATION; GENETIC STRUCTURE; GLACIOEUSTACY; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; PLEISTOCENE;

ASIA; AUSTRALASIA; AUSTRALIA; EURASIA; MALAY ARCHIPELAGO; NEW GUINEA; SOUTHEAST ASIA;

AVES; CACATUIDAE; PROBOSCIGER; PROBOSCIGER ATERRIMUS; PSITTACIDAE;

EID: 34548140556     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2007.01706.x     Document Type: Article

References (55)

1. Abbott, C.L. Double, M.C. (2003) Phylogeography of shy and white-capped albatrosses inferred from mitochondrial DNA sequences: implications for population history and taxonomy. Molecular Ecology, 12, 2747 2758.
2. Avise, J.C. Walker, D. (1998) Pleistocene phylogeographic effects on avian populations and the speciation process. Proceedings of the Royal Society B: Biological Sciences, 265, 457 463.
3. Baker, A.J. Marshall, H.D. (1997) Mitochondrial control region sequences as tools for understanding evolution. Avian molecular systematics (ed. by D.P. Mindell pp. 51 82. Academic Press, San Diego, CA.
4. Barnard, H. (1911) Field notes from Cape York. Emu, 11, 17 41.
5. Beehler, B.M. (1991) A naturalist in New Guinea. University of Texas, Austin, TX.
6. Chappell, J. Shackleton, N.J. (1986) Oxygen isotopes and sea level. Nature, 324, 137 140.
7. Clement, M., Posada, D. Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
8. Coates, B.J. (1985) The birds of Papua New Guinea. Dove Publications, Alderley, Qld.
9. Coates, B.J. Lindgren, E. (1978) Report of a preliminary survey of the avifauna of the Ok Tedi Area, Western Province, Papua New Guinea. The Ok Tedi Development Company and The Office of Environment and Conservation, Boroko.
10. Crandall, K.A. (1996) Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Molecular Biology and Evolution, 13, 115 131.
11. Flannery, T.F. Groves, C.P. (1998) A revision of the genus Zaglossus (Monotremata, Tachyglossidae), with description of new species and subspecies. Mammalia, 62, 367 396.
12. Garnett, S. Crowley, G. (2000) The action plan for Australian birds 2000. Environment Australia, Canberra.
13. Glenn, T.C., Stephan, W. Braun, M.J. (1999) Effects of a population bottleneck on Whooping Crane mitochondrial DNA variation. Conservation Biology, 13, 1097 1107.
14. Hall, R. (2001) Cenozoic reconstructions of SE Asia and the SW Pacific: changing patterns of land and sea. Faunal and floral migrations in SE Asia-Australia (ed. by I. Metcalfe, J.M.B. Smith, M.J. Morwood I.D. Davidson pp. 35 56. A.A. Balkema (Swets & Zeitlinger Publishers), Lisse.
15. Heads, M. (2001) Birds of paradise, biogeography and ecology in New Guinea: a review. Journal of Biogeography, 28, 893 925.
16. Helgen, K.M. Flannery, T.F. (2004) A new species of bandicoot, Microperoryctes aplini, from western New Guinea. Journal of Zoology, 264, 117 124.
17. Hope, G.S. (1976) The vegetational history of Mt Wilhelm, Papua New Guinea. Journal of Ecology, 64, 627 663.
18. Hope, G. Tulip, J. (1994) A long vegetation history from lowland Irian-Jaya, Indonesia. Palaeogeography, Palaeoclimatology, Palaeoecology, 109, 385 398.
19. Hope, G., Kershaw, A.P., Van Der Kaars, S., Xiangjun, S., Liew, P.M., Heusser, L.E., Takahara, H., Mcglone, M., Miyoshi, N. Moss, P.T. (2004) History of vegetation and habitat change in the Austral-Asian region. Quaternary International, 118-119, 103 126.
20. Igag, P. (2002) The conservation of large rainforest parrots. A study of the breeding biology of palm cockatoos, eclectus parrots and vulturine parrots. School of Botany and Zoology, Australian National University, Canberra.
21. Irwin, D.E. (2002) Phylogeographic breaks without geographic barriers to gene flow. Evolution, 56, 2383 2394.
22. Joseph, L., Slikas, B., Alpers, D. Schodde, R. (2001) Molecular systematics and phylogeography of New Guinean logrunners (Orthonychidae). Emu, 101, 273 280.
23. Juniper, T. Parr, M. (1998) Parrots: a guide to the parrots of the world. Pica Press, Robertsbridge, East Sussex.
24. Kidd, M.G. Friesen, V.L. (1998) Sequence variation in the guillemot (Alcidae: Cepphus) mitochondrial control region and its nuclear homolog. Molecular Biology and Evolution, 15, 61 70.
25. Knowles, L.L. Maddison, W.P. (2002) Statistical phylogeography. Molecular Ecology, 11, 2623 2635.
26. Lambert, D.M., Ritchie, P.A., Millar, C.D., Holland, B., Drummond, A.J. Baroni, C. (2002) Rates of evolution in ancient DNA from Adelie penguins. Science, 295, 2270 2273.
27. Legge, S., Heinsohn, R. Garnett, S. (2004) Availability of nest hollows and breeding population size of eclectus parrots, Eclectus roratus, on Cape York Peninsula, Australia. Wildlife Research, 31, 149 161.
28. Marchant, S. Higgins, P.J. (1999) Palm cockatoo. The handbook of Australian, New Zealand and Antarctic birds, pp. 32 39. Oxford University Press, Oxford.
29. Marshall, H.D. Baker, A.J. (1997) Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Molecular Biology and Evolution, 14, 173 184.
30. McGuigan, K., Zhu, D., Allen, G.R. Moritz, C. (2000) Phylogenetic relationships and historical biogeography of melanotaeniid fishes in Australia and New Guinea. Marine and Freshwater Research, 51, 713 723.
31. Murphy, S.A. (2006) The ecology and conservation biology of palm cockatoos Probosciger aterrimus. PhD Thesis, School of Botany and Zoology, Australian National University, Canberra.
32. Murphy, S., Legge, S. Heinsohn, R. (2003) The breeding biology of palm cockatoos (Probosciger aterrimus): a case of a slow life history. Journal of Zoology, 261, 327 339.
33. Nicholls, J.A., Double, M.C., Rowell, D.M. Magrath, R.D. (2000) The evolution of cooperative and pair breeding in thornbills Acanthiza (Pardalotidae). Journal of Avian Biology, 31, 165 176.
34. Nix, H.A. Kalma, J.D. (1972) Climate as a dominant control in the biogeography of northern Australia and New Guinea. Bridge and barrier: the natural and cultural history of Torres Strait (ed. by D. Walker pp. 61 92. The Australian National University, Canberra.
35. Norman, J.A., Christidis, L., Joseph, L., Slikas, B. Alpers, D. (2002) Unravelling a biogeographical knot: origin of the 'leapfrog' distribution pattern of Australo-Papuan sooty owls (Strigiformes) and logrunners (Passeriformes). Proceedings of the Royal Society B: Biological Sciences, 269, 2127 2133.
36. O'Connor, S., Aplin, K., Spriggs, M., Veth, P. Ayliffe, L. (2002) From savannah to rainforest: changing environments and human occupation at Liang Lemdubu, Aru Islands, Maluku (Indonesia). Bridging Wallace's Line. Advances in geoecology (ed. by A.P. Kershaw, N.J. Tapper, B. David, P.M. Bishop D. Penny pp. 279 306. Catena Verlag, Reiskirchen.
37. 14C yr bp. Journal of Biogeography, 31, 1381 1444.
38. Polhemus, D.A. Polhemus, J.T. (1998) Assembling New Guinea: 40 million years of island arc accretion as indicated by the distributions of aquatice Heteroptera (Insecta). Biogeography and geological evolution of SE Asia (ed. by R. Hall J.D. Holloway pp. 327 340. Backbuys Publishers, Leiden, The Netherlands.
39. Polhemus, J.T. Polhemus, D.A. (2002) The Trepobatinae (Gerridae) of New Guinea and surrounding regions, with a review of the world fauna. Part 6. Phylogeny, biogeography, world checklist, bibliography and final taxonomic addenda. Insect Systematics & Evolution, 33, 253 290.
40. Polhemus, D.A., Englund, R.A. Allen, G.R. (2004) Freshwater biotas of New Guinea and nearby islands: analysis of endemism, richness, and threats. Conservation International, Seattle, WA.
41. Posada, D., Crandall, K.A. Templeton, A.R. (2000) GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
42. Quinn, T.W. (1992) The genetic legacy of Mother Goose: phylogeographic patterns of Lesser Snow Goose Chen caerulescens caerulescens maternal lineages. Molecular Ecology, 1, 105 117.
43. Rawlings, L.H. Donnellan, S.C. (2003) Phylogeographic analysis of the green python, Morelia viridis, reveals cryptic diversity. Molecular Phylogenetics and Evolution, 27, 36 44.
44. Rowley, I. (1997) Family Cacatuidae (cockatoos). Handbook of the birds of the world, Volume 4. Sandgrouse to Cuckoos (ed. by I. del Hoyo, A. Elliot J. Sargatal pp. 246 279. Lynx Edicions, Barcelona.
45. Rozas, J., Sanchez-Delbarrio, J.C., Messeguer, X. Rozas, R. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496 2497.
46. Rozefelds, A.C. Barners, R.W. (2002) The systematic and biogeographical relationships of Ceratopetalum (Cunoniaceae) in Australia and New Guinea. International Journal of Plant Sciences, 163, 651 673.
47. Schodde, R. Tidemann, S. (1986) Complete book of Australian birds, 2nd edn. Reader's Digest, Sydney.
48. Schultheis, A.S., Weigt, L.A. Hendricks, A.C. (2002) Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Molecular Ecology, 11, 317 327.
49. Sorenson, M.D. Fleischer, R.C. (1996) Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus. Proceedings of the National Academy of Sciences USA, 93, 15239 15243.
50. Templeton, A.R. (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
51. Templeton, A.R. (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
52. Templeton, A.R., Crandall, K.A. Sing, C.F. (1992) A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA-sequence data. 3. Cladogram estimation. Genetics, 132, 619 633.
53. Turner, T.F., Trexler, J.C., Harris, J.L. Haynes, J.L. (2000) Nested cladistic analysis indicates population fragmentation shapes genetic diversity in a freshwater mussel. Genetics, 154, 777 785.
54. Voris, H.K. (2000) Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. Journal of Biogeography, 27, 1153 1167.
55. Westerman, M., Springer, M.S. Krajewski, C. (2001) Molecular relationships of the New Guinean bandicoot genera Microperoryctes and Echymipera (Marsupialia: Peramelina). Journal of Mammalian Evolution, 8, 93 105.