Phylogeography of shy and white-capped albatrosses inferred from mitochondrial DNA sequences: Implications for population history and taxonomy

Molecular Ecology

Volumn 12, Issue 10, 2003, Pages 2747-2758

  Abbott, Cathryn L ^a   Double, Michael C ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

Albatross; Genetics; mtDNA; Nested clade analysis; Phylogeography; Thalassarche

Indexed keywords

ANALYSIS OF VARIANCE; ANIMALS; AUSTRALIA; BASE SEQUENCE; BIRDS; DNA PRIMERS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GEOGRAPHY; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NEW ZEALAND; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AVES; CICONIIFORMES; DIOMEDEA; THALASSARCHE CAUTA;

EID: 0141836183     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01944.x     Document Type: Article

References (66)

1. Alexander K, Robertson G, Gales R (1997) The incidental mortality of albatrosses in longline fisheries. A Report on the Workshop from the First International Conference on the Biology and Conservation of Albatrosses. Australian Antarctic Division, Tasmania, Hobart, Australia.
2. Allende LM, Rubio I, Ruiz-del-Valle V, et al. (2001 ) The Old World sparrows (genus Passer) phylogeography and their relative abundance of nuclear mtDNA pseudogenes. Journal of Molecular Evolution, 53, 144-154.
3. Avise JC, Nelson WS, Bowen BW, Walker D (2000) Phylogeography of colonially nesting seabirds, with special reference to global matrilineal patterns in the sooty tern (Sterna fuscata). Molecular Ecology, 9, 1783-1792.
4. Baker AJ, Marshall HD (1997) Mitochondrial control region sequences as tools for understanding evolution. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 51-82. Academic Press, New York.
5. Baum DA, Shaw KL (1995) Genealogical perspectives on the species problem. In: Experimental and Molecular Approaches to Plant Biosystematics (eds Hoch PC, Stephenson AG), pp. 289-303. Missouri Botanical Garden, St Louis.
6. Berg T, Moum T, Johansen S (1995) Variable numbers of simple tandem repeats make birds of the order Ciconiiformes heteroplasmic in their mitochondrial genomes. Current Genetics, 27, 257-262.
7. Brothers N (1991) Albatross mortality and associated bait loss in the Japanese longline fishery in the Southern Ocean. Biological Conservation, 55, 255-268.
8. Brothers N, Gales R, Hedd A, Robertson G (1998) Foraging movements of the shy albatross Diomedea cauta breeding in Australia - implications for interactions with longline fisheries. Ibis, 140, 446-457.
9. Burg T (2000) Genetic Analyses of Albatrosses: Mating Systems, Population Structure and Taxonomy. PhD thesis, Cambridge University.
10. Burg TM, Croxall JP (2001) Global relationships amongst black-browed and grey-headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites. Molecular Ecology, 10, 2647-2660.
11. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
12. Cracraft J (1983) Species concepts and speciation analysis. In: Current Ornithology (ed. Johnson RF), pp. 159-187. Plenum Press, New York.
13. Crandall KA (1996) Multiple interspecies transmissions of human and simian t-cell leukemia/lymphoma virus type I sequences. Molecular Biology and Evolution, 13, 115-131.
14. Crochet PA, Bonhomme F, Lebreton JD (2000) Molecular phylogeny and plumage evolution in gulls (Larini). Journal of Evolutionary Biology, 13, 47-57.
15. Croxall JP (1998) Research and conservation: a future for albatrosses. In: Albatross: Biology and Conservation (eds Robertson G, Gales R), pp. 269-290. Surrey Beatty and Sons, Chipping Norton.
16. Croxall JP, Gales R (1998) An assessment of the conservation status of albatrosses. In: Albatross: Biology and Conservation (eds Robertson G, Gales R), pp. 46-66. Surrey Beatty and Sons, Chipping Norton.
17. Davis JI, Nixon KC (1992) Populations, genetic variation, and the delimitation of phylogenetic species. Systematic Biology, 41, 421-435.
18. de Queiroz K (1998) The general lineage concept of species, species criteria, and the process of speciation. In: Endless Forms: Species and Speciation (eds Howard DJ, Berlocher SH), pp. 57-75. Oxford University Press, Oxford.
19. Donoghue MJ (1985) A critique of the biological species concept and recommendations for a phylogenetic alternative. Bryologist, 88, 172-181.
20. Double MC, Gales R, Reid T, Brothers N, Abbott CL (2003) Morphometric comparison of Australian shy and New Zealand white-capped albatrosses. Emu, in press.
21. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
22. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
23. Fitzsimmons NN, Limpus CJ, Norman JA, Goldizen AR, Miller JD, Moritz C (1997) Philopatry of male marine turtles inferred from mitochondrial DNA markers. Proceedings of the National Academy of Sciences of the United States of America, 94, 8912-8917.
24. Gales R (1998) Albatross populations: status and threats. In: Albatross: Biology and Conservation (eds Robertson G, Gales R), pp. 20-45. Surrey Beatty and Sons, Chipping Norton.
25. Garnett S, Crowley G (2000) The Action Plan for Australian Birds. Environment Australia, Canberra.
26. Gomez-Zurita J, Petitpierre E, Juan C (2000) Nested cladistic analysis, phylogeography and speciation in the Timarcha goettingensis complex (Coleoptera, Chrysomelidae). Molecular Ecology, 9, 557-570.
27. Helbig AJ, Knox AG, Parkin DT, Sangster G, Collinson M (2002) Guidelines for assigning species rank. Ibis, 144, 518-525.
28. Holdaway RN, Worthy TH, Tennyson AJD (2001) A working list of breeding bird species of the New Zealand region at first human contact. New Zealand Journal of Zoology, 28, 119-187.
29. Kidd MG, Friesen VL (1998) Sequence variation in the guillemot (Alcidae: Cepphus) mitochondrial control region and its nuclear homolog. Molecular Biology and Evolution, 15, 61-70.
30. Knowles LL, Maddison WP (2002) Statistical phylogeography. Molecular Ecology, 11, 2623-2635.
31. Kocher TD, Thomas WK, Meyer A, et al. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America, 86, 6196-6200.
32. Mayr E (1996) What is a species, and what is not? Philosophy of Science, 63, 262-277.
33. Milot E, Gibbs HL, Hobson KA (2000) Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia). Molecular Ecology, 9, 667-681.
34. Murray TE, Bartle JA, Kalish SR, Taylor PR (1993) Incidental capture of seabirds by Japanese southern bluefin tuna longline vessels in New Zealand waters. 1988-92. Bird Conservation International, 3, 181-210.
35. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences USA, 76, 5269-5273.
36. Nicholls JA, Double MC, Rowell DM, Magrath RD (2000) The evolution of cooperative and pair breeding in thornbills Acanthiza (Pardalotidae). Journal of Avian Biology, 31, 165-176.
37. Nielsen KK, Arctander P (2001) Recombination among multiple mitochondrial pseudogenes from a Passerine genus. Molecular Phylogenetics and Evolution, 18, 362-369.
38. Norman JA, Christidis L, Joseph L, Slikas B, Alpers D (2002) Unravelling a biogeographical knot: origin of the 'leapfrog' distribution pattern of Australo-Papuan sooty owls (Strigiformes) and logrunners (Passeriformes). Proceedings of the Royal Society of London - Series B: Biological Sciences, 269, 2127-2133.
39. Nunn GB, Stanley SE (1998) Body size effects and rates of cytochrome b evolution in tube-nosed seabirds. Molecular Biology and Evolution, 15, 1360-1371.
40. Nunn GB, Cooper J, Jouventin P, Robertson CJR, Robertson GG (1996) Evolutionary relationships among extant albatrosses (Procellariiformes, Diomedeidae) established from complete cytochrome-b gene sequences. Auk, 113, 784-801.
41. Oyler-McCance SJ, Kahn NW, Burnham KP, Braun CE, Quinn TW (1999) A population genetic comparison of large- and small-bodied sage grouse in Colorado using microsatellite and mitochondrial DNA markers. Molecular Ecology, 8, 1457-1465.
42. Paulo OS, Jordan WC, Bruford MW, Nichols RA (2002) Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard. Molecular Ecology, 11, 809-819.
43. Perkins SL (2001) Phylogeography of Caribbean lizard malaria: tracing the history of vector-borne parasites. Journal of Evolutionary Biology, 14, 34-45.
44. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
45. Posada D, Crandall KA, Templeton AR (2000) GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487-488.
46. Robertson CJR, Nunn GB (1998) Towards a new taxonomy for albatrosses. In: Albatross: Biology and Conservation (eds Robertson G, Gales R), pp. 13-19. Surrey Beatty and Sons, Chipping Norton.
47. Ruokonen M, Kvist L, Lumme J (2000) Close relatedness between mitochondrial DNA from seven Anser goose species. Journal of Evolutionary Biology, 13, 532-540.
48. Ryan PG, Keith DG, Kroese M (2002) Seabird bycatch by tuna longline fisheries off southern Africa. 1998-2000. South African Journal of Marine Science, 24, 103-110.
49. Schneider S, Kueffer JM, Roessli D, Excoffier L (2000) Arlequin, Version 2.000. A software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva.
50. Shirihai H (2002) A Complete Guide to Antarctic wildlife. Alula Press, Degerby, Finland.
51. Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651-701.
52. Sorenson MD, Fleischer RC (1996) Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus. Proceedings of the National Academy of Sciences of the United States of America, 93, 15239-15243.
53. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, MA.
54. Templeton AR (1989) The meaning of species and speciation: a genetic perspective. In: Speciation and its Consequences (eds Otte D, Endler JA), pp. 3-27. Sinauer, Sunderland, MA.
55. Templeton AR (1998) Nested clade analyses of phylogeographic data-testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381-397.
56. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669.
57. Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343-352.
58. Templeton AR, Routman E, Phillips CA (1995) Separating population structure from population history - a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767-782.
59. Tennyson A (2002) A recent review of New Zealand seabirds. Australasian Seabird Bulletin, 38, 3-5.
60. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
61. Tickell WLN (2000) Albatrosses. Pica Press, East Sussex.
62. Trueman JWH (1998) Reverse successive weighting. Systematic Biology, 47, 733-737.
63. Wennerberg L (2001) Breeding origin and migration pattern of dunlin (Calidris alpina) revealed by mitochondrial DNA analysis. Molecular Ecology, 10, 1111-1120.
64. Wiley EO (1978) The evolutionary species concept reconsidered. Systematic Zoology, 39, 399-413.
65. Worheide G, Hooper JNA, Degnan BM (2002) Phylogeography of western Pacific Leucetta 'chagosensis' (Porifera: Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia). Molecular Ecology, 11, 1753-1768.
66. Zink RM, Blackwell RC (1998) Molecular systematics and biogeography of aridland gnatcatchers (genus Polioptila) and evidence supporting species status of the California gnatcatcher (Polioptila californica). Molecular Phylogenetics and Evolution, 9, 26-32.