Identification of a novel gentisate 1,2-dioxygenase from Silicibacter pomeroyi

Biotechnology Letters

Volumn 29, Issue 10, 2007, Pages 1529-1535

  Liu, Dongqi ^a   Zhu, Tingting ^a   Fan, Li ^a   Quan, Junming ^a   Guo, Hongchun ^a   Ni, Jinren ^a  

^a PEKING UNIVERSITY   (China)

Author keywords

Gentisate 1,2 dioxygenase; Purification; Recombinant; Silicibacter pomeroyi

Indexed keywords

HOMOTRIMERIC PROTEIN; SILICIBACTER POMEROYI;

APPROXIMATION THEORY; FILTRATION; GELS; GENETIC ENGINEERING; MOLECULAR MASS; PROTEINS; PURIFICATION;

ESCHERICHIA COLI;

DIOXYGENASE; GENTISATE 1,2 DIOXYGENASE; GENTISATE 1,2-DIOXYGENASE; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CLASSIFICATION; ENZYME ACTIVE SITE; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; METABOLISM; MOLECULAR GENETICS; OPEN READING FRAME; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; RHODOBACTERACEAE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CATALYTIC DOMAIN; DIOXYGENASES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; OPEN READING FRAMES; PHYLOGENY; RECOMBINANT PROTEINS; RHODOBACTERACEAE; SEQUENCE HOMOLOGY, AMINO ACID;

ESCHERICHIA COLI; SILICIBACTER POMEROYI; SILICIBACTER POMEROYI DSS-3;

EID: 34548134134     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-007-9421-7     Document Type: Article

References (22)

1. Adams MA, Singh VK, Keller BO, Jia Z (2006) Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7. Mol Microbiol 61:1469-1484
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Chua CH, Feng YM, Yeo CC, Khoo HE, Poh CL (2001) Identification of amino acid residues essential for catalytic activity of gentisate 1,2-dioxygenase from Pseudomonas alcaligenes NCIB 9867. FEMS Microbiol Lett 204:141-146
4. Clewley JP (1995) Macintosh sequence analysis software. DNAstar's LaserGene. Mol Biotechnol 3:221-224
5. Crawford RL, Hutton SW, Chapman PJ (1975) Purification and properties of gentisate 1,2-dioxygenase from Moraxella osloensis. J Bacteriol 121:794-799
6. Feng YM, Khoo HE, Poh CL (1999) Purification and characterization of gentisate 1,2-dioxygenases from Pseudomonas alcaligenes NCIB 9867 and Pseudomonas putida NCIB 9869. Appl Environ Microbiol 65:946-950
7. Fu W, Oriel P (1998) Gentisate 1,2-dioxygenase from Haloferax sp. D1227. Extremophiles 2:439-446
8. Gao X, Tan CL, Yeo CC, Poh CL (2005) Molecular and biochemical characterization of the xlnD-encoded 3-hydroxybenzoate 6-hydroxylase involved in the degradation of 2,5-xylenol via the gentisate pathway in Pseudomonas alcaligenes NCIMB 9867. J Bacteriol 187:7696-7702
9. Harpel MR, Lipscomb JD (1990) Gentisate 1,2-dioxygenase from Pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans. J Biol Chem 265:6301-6311
10. Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23:403-405
11. Jones DC, Cooper RA (1990) Catabolism of 3-hydroxybenzoate by the gentisate pathway in Klebsiella pneumoniae M5a1. Arch Microbiol 54:489-495
12. Kloetzel MC, Abadir BY (1955) Synthetic analogs of cortical hormones. Part II. 3-substituted α-2,5-trihydroxyacetophenone derivatives. J Am Chem Soc 77:3823-3826
13. Kumar SK, Tamura K, Nei M (2004) MEGA3: an integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
14. Lack L (1959) The enzymic oxidation of gentisic acid. Biochim Biophys Acta 34:117-123
15. Luo S, Liu DQ, Liu H, Zhou NY (2006) Site-directed mutagenesis of gentisate 1,2-dioxygenases from Klebsiella pneumoniae M5a1 and Ralstonia sp. strain U2. Microbiol Res 161:138-144
16. Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31:3381-3385
17. Shen XH, Jiang CY, Huang Y, Liu ZP, Liu SJ (2005) Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum. Appl Environ Microbiol 71:3442-3452
18. Studier FW, Moffatt BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113-130
19. Suarez M, Ferrer E, Martin M (1996) Purification and biochemical characterization of gentisate 1,2-dioxygenase from Klebsiella pneumoniae M5a1. FEMS Microbiol Lett 143:89-95
20. Werwath J, Arfmann HA, Pieper DH, Timmis KN, Wittich RM (1998) Biochemical and genetic characterization of a gentisate 1,2-dioxygenase from Sphingomonas sp. strain RW5. J Bacteriol 180:4171-4176
21. Wheelis ML, Palleroni NJ, Stanier RY (1967) The metabolism of aromatic acids by Pseudomonas testosteroni and Pseudomonas acidovorans. Arch Mikrobiol 59:302-314
22. Zhou NY, Fuenmayor SL, Williams PA (2001) nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J Bacteriol 183:700-708