DRpp20 and DRpp40: Two protein subunits involved in Dictyostelium discoideum ribonuclease P holoenzyme assembly

Gene

Volumn 400, Issue 1-2, 2007, Pages 52-59

  Kalavrizioti, Dimitra ^a   Vourekas, Anastassios ^a   Drainas, Denis ^a  

^a UNIVERSITY OF PATRAS   (Greece)

Author keywords

Ribonucleoprotein; RNA processing; RNase P; tRNA

Indexed keywords

PROTEIN SUBUNIT; RIBONUCLEASE P;

ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; DICTYOSTELIUM DISCOIDEUM; ENZYME ACTIVITY; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DICTYOSTELIUM; HOLOENZYMES; MOLECULAR SEQUENCE DATA; PROTEIN SUBUNITS; PROTOZOAN PROTEINS; RIBONUCLEASE P; SEQUENCE HOMOLOGY, AMINO ACID;

DICTYOSTELIUM DISCOIDEUM;

EID: 34548009843     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.05.020     Document Type: Article

References (29)

1. Altschul S.F., et al. Gapped BLAST and PSI BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Aravind L., Iyer L.M., and Anantharaman V. The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism. Genome Biology 4 (2003) R64
3. Bateman A., et al. The Pfam protein families database. Nucleic Acids Res. 32 (2004) 138-141
4. Boomershine W.P., McElroy C.A., Tsai H.Y., Wilson R.C., Gopalan V., and Foster M.P. Structure of Mth11/Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P. Proc. Natl. Acad. Sci. U. S. A. 26 (2003) 15398-15403
5. Chamberlain J.R., Lee Y., Lane W.S., and Engelke D.R. Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev. 12 (1998) 1678-1690
6. Eichinger L., et al. The genome of the social amoeba Dictyostelium discoideum. Nature 435 (2005) 43-57
7. Frank D.N., and Pace N.R. Ribonuclease P: unity and diversity in a tRNA processing ribozyme. Ann. Rev. Biochem. 67 (1998) 153-180
8. Guerrier-Takada C., Gardiner K., Marsh T., Pace N., and Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35 (1983) 849-857
9. Hall T.A., and Brown J.W. Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA 8 (2002) 296-306
10. Hua Y., and Zhou J. Rpp20 interacts with SMN and is re-distributed into SMN granules in response to stress. Biochem. Biophys. Res. Commun. 314 (2004) 268-276
11. Jarrous N. Human ribonuclease P: subunits, function, and intranuclear localization. RNA 8 (2002) 1-7
12. Jiang T., and Altman S. Protein-protein interactions with subunits of human nuclear RNase P. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 920-925
13. Kawano S., Nakashima T., Kakuta Y., Tanaka I., and Kimura M. Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme. J. Mol. Biol. 2 (2006) 583-591
14. Kikovska E., Svard S.G., and Kirsebom L.A. From the cover: eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 2062-2067
15. Kouzuma Y., et al. Reconstitution of archaeal ribonuclease P from RNA and four protein subunits. Biochem. Biophys. Res. Commun. 306 (2003) 666-673
16. Li Y., and Altman S. A subunit of human nuclear RNase P has ATPase activity. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 441-444
17. Marquez S.M., et al. Structural implications of novel diversity in eucaryal RNase P RNA. RNA 11 (2005) 739-751
18. Milligan J.F., Groebe D.R., Witherell G.W., and Uhlenbeck O.C. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res. 15 (1987) 8783-8798
19. Pannucci J.A., Haas E.S., Hall T.A., Harris J.K., and Brown J.W. RNase P RNAs from some Archaea are catalytically active. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 7803-7808
20. Reiner R., Ben-Asouli Y., Krilovetzky I., and Jarrous N. A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription. Genes Dev. 20 (2006) 1621-1635
21. Rosenblad M.A., Lopez M.D., Piccinelli P., and Samuelsson T. Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes. Nucleic Acids Res. 34 (2006) 5145-5156
22. Stathopoulos C., Kalpaxis D.L., and Drainas D. Partial purification and characterization of RNase P from Dictyostelium discoideum. Eur. J. Biochem. 228 (1995) 976-980
23. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
24. Vourekas A., Kalavrizioti D., Zarkadis I.K., Spyroulias G.A., Stathopoulos C., and Drainas D. A 40 kDa Rpp30/Rpp1p homologue is a protein subunit of Dictyostelium discoideum RNase P holoenzyme. Biochimie 89 (2007) 301-310
25. Walker S.C., and Engelke D.R. Ribonuclease P: the evolution of an ancient RNA enzyme. Crit. Rev. Biochem. Mol. Biol. 41 (2006) 77-102
26. Welting T.J., et al. Heterodimerization regulates RNase MRP/RNase P association, localization, and expression of Rpp20 and Rpp25. RNA 13 (2007) 65-75
27. Wilson R.C., Bohlen C.J., Foster M.P., and Bell C.E. Structure of Pfu Pop5, an archaeal RNase P protein. Proc. Natl. Acad. Sci. U. S. A. 4 (2006) 873-878
28. Xiao S., Houser-Scott F., and Engelke D.R. Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway. J. Cell. Physiol. 187 (2001) 11-20
29. Xiao S., Scott F., Fierke C.A., and Engelke D.R. Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes. Ann. Rev. Biochem. 71 (2002) 165-189