메뉴 건너뛰기




Volumn 4, Issue 10, 2003, Pages

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism

Author keywords

Alba; Chromosomal Protein; Last Universal Common Ancestor; Macronuclear Development; Phyletic Pattern

Indexed keywords

ARCHAEAL PROTEIN; DNA BINDING PROTEIN; RIBONUCLEASE P; RNA; SSO10B PROTEIN, SULFOLOBUS SOLFATARICUS;

EID: 3042784127     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2003-4-10-r64     Document Type: Article
Times cited : (129)

References (52)
  • 2
    • 0037381650 scopus 로고    scopus 로고
    • Regulation of gene expression by histone-like proteins in bacteria
    • PID: 12672495, COI: 1:CAS:528:DC%2BD3sXisV2rtbg%3D
    • Dorman CJ, Deighan P: Regulation of gene expression by histone-like proteins in bacteria. Curr Opin Genet Dev. 2003, 13: 179-184. 10.1016/S0959-437X(03)00025-X. DOI: 10.1016/S0959-437X(03)00025-X
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 179-184
    • Dorman, C.J.1    Deighan, P.2
  • 3
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • PID: 9305837, COI: 1:CAS:528:DyaK2sXmtFGisrc%3D
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ: Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature. 1997, 389: 251-260. 10.1038/38444. DOI: 10.1038/38444
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 5
    • 0036464541 scopus 로고    scopus 로고
    • Identification, cloning and characterization of a new DNA-binding protein from the hyperthermophilic methanogen Methanopyrus kandleri
    • PID: 11809880, COI: 1:CAS:528:DC%2BD38XhsVyhtro%3D
    • Pavlov NA, Cherny DI, Nazimov IV, Slesarev AI, Subramaniam V: Identification, cloning and characterization of a new DNA-binding protein from the hyperthermophilic methanogen Methanopyrus kandleri. Nucleic Acids Res. 2002, 30: 685-694. 10.1093/nar/30.3.685. DOI: 10.1093/nar/30.3.685
    • (2002) Nucleic Acids Res , vol.30 , pp. 685-694
    • Pavlov, N.A.1    Cherny, D.I.2    Nazimov, I.V.3    Slesarev, A.I.4    Subramaniam, V.5
  • 6
    • 0036890204 scopus 로고    scopus 로고
    • Holding it together: chromatin in the Archaea
    • PID: 12446147, COI: 1:CAS:528:DC%2BD38XoslCgu7c%3D
    • White MF, Bell SD: Holding it together: chromatin in the Archaea. Trends Genet. 2002, 18: 621-626. 10.1016/S0168-9525(02)02808-1. DOI: 10.1016/S0168-9525(02)02808-1
    • (2002) Trends Genet , vol.18 , pp. 621-626
    • White, M.F.1    Bell, S.D.2
  • 8
    • 0037023326 scopus 로고    scopus 로고
    • The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation
    • PID: 11935028, COI: 1:CAS:528:DC%2BD38XivVWjsL0%3D
    • Bell SD, Botting CH, Wardleworth BN, Jackson SP, White MF: The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation. Science. 2002, 296: 148-151. 10.1126/science.1070506. DOI: 10.1126/science.1070506
    • (2002) Science , vol.296 , pp. 148-151
    • Bell, S.D.1    Botting, C.H.2    Wardleworth, B.N.3    Jackson, S.P.4    White, M.F.5
  • 9
    • 0033917479 scopus 로고    scopus 로고
    • An abundant DNA binding protein from the hyperthermophilic archaeon Sulfolobus shibatae affects DNA supercoiling in a temperature-dependent fashion
    • PID: 10869069, COI: 1:CAS:528:DC%2BD3cXksFyms7c%3D
    • Xue H, Guo R, Wen Y, Liu D, Huang L: An abundant DNA binding protein from the hyperthermophilic archaeon Sulfolobus shibatae affects DNA supercoiling in a temperature-dependent fashion. J Bacteriol. 2000, 182: 3929-3933. 10.1128/JB.182.14.3929-3933.2000. DOI: 10.1128/JB.182.14.3929-3933.2000
    • (2000) J Bacteriol , vol.182 , pp. 3929-3933
    • Xue, H.1    Guo, R.2    Wen, Y.3    Liu, D.4    Huang, L.5
  • 10
    • 0032961053 scopus 로고    scopus 로고
    • Identification of the gene encoding archeal-specific DNA-binding proteins of the Sac10b family
    • PID: 10320587, COI: 1:CAS:528:DyaK1MXjs1emtro%3D
    • Forterre P, Confalonieri F, Knapp S: Identification of the gene encoding archeal-specific DNA-binding proteins of the Sac10b family. Mol Microbiol. 1999, 32: 669-670. 10.1046/j.1365-2958.1999.01366.x. DOI: 10.1046/j.1365-2958.1999.01366.x
    • (1999) Mol Microbiol , vol.32 , pp. 669-670
    • Forterre, P.1    Confalonieri, F.2    Knapp, S.3
  • 11
    • 0038168161 scopus 로고    scopus 로고
    • Structure of a Sir2 substrate, Alba, reveals a mechanism for deactylation-induced enhancement of DNA-binding
    • PID: 12730210, COI: 1:CAS:528:DC%2BD3sXlt1Clt7o%3D
    • Zhao K, Chai X, Marmorstein R: Structure of a Sir2 substrate, Alba, reveals a mechanism for deactylation-induced enhancement of DNA-binding. J Biol Chem. 2003, 278: 26071-26077. 10.1074/jbc.M303666200. DOI: 10.1074/jbc.M303666200
    • (2003) J Biol Chem , vol.278 , pp. 26071-26077
    • Zhao, K.1    Chai, X.2    Marmorstein, R.3
  • 12
    • 0037009516 scopus 로고    scopus 로고
    • Structure of Alba: an archaeal chromatin protein modulated by acetylation
    • PID: 12198167, COI: 1:CAS:528:DC%2BD38Xms1Kmsrc%3D
    • Wardleworth BN, Russell RJ, Bell SD, Taylor GL, White MF: Structure of Alba: an archaeal chromatin protein modulated by acetylation. EMBO J. 2002, 21: 4654-4662. 10.1093/emboj/cdf465. DOI: 10.1093/emboj/cdf465
    • (2002) EMBO J , vol.21 , pp. 4654-4662
    • Wardleworth, B.N.1    Russell, R.J.2    Bell, S.D.3    Taylor, G.L.4    White, M.F.5
  • 13
    • 0034127111 scopus 로고    scopus 로고
    • Growth phase-dependent expression and degradation of histones in the thermophilic archaeon Thermococcus zilligii
    • PID: 10844675, COI: 1:CAS:528:DC%2BD3cXktVCruro%3D
    • Dinger ME, Baillie GJ, Musgrave DR: Growth phase-dependent expression and degradation of histones in the thermophilic archaeon Thermococcus zilligii. Mol Microbiol. 2000, 36: 876-885. 10.1046/j.1365-2958.2000.01904.x. DOI: 10.1046/j.1365-2958.2000.01904.x
    • (2000) Mol Microbiol , vol.36 , pp. 876-885
    • Dinger, M.E.1    Baillie, G.J.2    Musgrave, D.R.3
  • 15
    • 0032499692 scopus 로고    scopus 로고
    • Rpp2, an essential protein subunit of nuclear RNase P, is required for processing of precursor tRNAs and 35S precursor rRNA in Saccharomyces cerevisiae
    • PID: 9618478, COI: 1:CAS:528:DyaK1cXjslyntLY%3D
    • Stolc V, Katz A, Altman S: Rpp2, an essential protein subunit of nuclear RNase P, is required for processing of precursor tRNAs and 35S precursor rRNA in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 1998, 95: 6716-6721. 10.1073/pnas.95.12.6716. DOI: 10.1073/pnas.95.12.6716
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6716-6721
    • Stolc, V.1    Katz, A.2    Altman, S.3
  • 16
    • 2642635832 scopus 로고    scopus 로고
    • Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP
    • PID: 9620854, COI: 1:CAS:528:DyaK1cXjslOjtb4%3D
    • Chamberlain JR, Lee Y, Lane WS, Engelke DR: Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev. 1998, 12: 1678-1690. DOI: 10.1101/gad.12.11.1678
    • (1998) Genes Dev , vol.12 , pp. 1678-1690
    • Chamberlain, J.R.1    Lee, Y.2    Lane, W.S.3    Engelke, D.R.4
  • 17
    • 0030614558 scopus 로고    scopus 로고
    • Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P
    • PID: 9037013, COI: 1:CAS:528:DyaK2sXhtlGitL8%3D
    • Eder PS, Kekuda R, Stolc V, Altman S: Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P. Proc Natl Acad Sci USA. 1997, 94: 1101-1106. 10.1073/pnas.94.4.1101. DOI: 10.1073/pnas.94.4.1101
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1101-1106
    • Eder, P.S.1    Kekuda, R.2    Stolc, V.3    Altman, S.4
  • 18
    • 0036223840 scopus 로고    scopus 로고
    • Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P
    • PID: 12003489, COI: 1:CAS:528:DC%2BD38Xjt1eht7g%3D
    • Guerrier-Takada C, Eder PS, Gopalan V, Altman S: Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P. RNA. 2002, 8: 290-295. 10.1017/S1355838202027954. DOI: 10.1017/S1355838202027954
    • (2002) RNA , vol.8 , pp. 290-295
    • Guerrier-Takada, C.1    Eder, P.S.2    Gopalan, V.3    Altman, S.4
  • 19
    • 0037107344 scopus 로고    scopus 로고
    • A PIWI homolog is one of the proteins expressed exclusively during macronuclear development in the ciliate Stylonychia lemnae
    • PID: 12384584, COI: 1:CAS:528:DC%2BD38Xot1Cisrs%3D
    • Fetzer CP, Hogan DJ, Lipps HJ: A PIWI homolog is one of the proteins expressed exclusively during macronuclear development in the ciliate Stylonychia lemnae. Nucleic Acids Res. 2002, 30: 4380-4386. 10.1093/nar/gkf579. DOI: 10.1093/nar/gkf579
    • (2002) Nucleic Acids Res , vol.30 , pp. 4380-4386
    • Fetzer, C.P.1    Hogan, D.J.2    Lipps, H.J.3
  • 20
    • 0037423758 scopus 로고    scopus 로고
    • Solution structure of the R3H domain from human Smubp-2
    • PID: 12547203, COI: 1:CAS:528:DC%2BD3sXlt12gtQ%3D%3D
    • Liepinsh E, Leonchiks A, Sharipo A, Guignard L, Otting G: Solution structure of the R3H domain from human Smubp-2. J Mol Biol. 2003, 326: 217-223. 10.1016/S0022-2836(02)01381-5. DOI: 10.1016/S0022-2836(02)01381-5
    • (2003) J Mol Biol , vol.326 , pp. 217-223
    • Liepinsh, E.1    Leonchiks, A.2    Sharipo, A.3    Guignard, L.4    Otting, G.5
  • 21
    • 0034282792 scopus 로고    scopus 로고
    • Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG)
    • PID: 10970866, COI: 1:CAS:528:DC%2BD3cXmslGrsrs%3D
    • Yaremchuk A, Cusack S, Tukalo M: Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG). EMBO J. 2000, 19: 4745-4758. 10.1093/emboj/19.17.4745. DOI: 10.1093/emboj/19.17.4745
    • (2000) EMBO J , vol.19 , pp. 4745-4758
    • Yaremchuk, A.1    Cusack, S.2    Tukalo, M.3
  • 22
    • 0035312922 scopus 로고    scopus 로고
    • THUMP - a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases
    • PID: 11295541, COI: 1:CAS:528:DC%2BD3MXisF2ntro%3D
    • Aravind L, Koonin EV: THUMP - a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases. Trends Biochem Sci. 2001, 26: 215-217. 10.1016/S0968-0004(01)01826-6. DOI: 10.1016/S0968-0004(01)01826-6
    • (2001) Trends Biochem Sci , vol.26 , pp. 215-217
    • Aravind, L.1    Koonin, E.V.2
  • 23
    • 0036529621 scopus 로고    scopus 로고
    • Comparative genomics and evolution of proteins involved in RNA metabolism
    • PID: 11917006, COI: 1:CAS:528:DC%2BD38XjtFOkur8%3D
    • Anantharaman V, Koonin EV, Aravind L: Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res. 2002, 30: 1427-1464. 10.1093/nar/30.7.1427. DOI: 10.1093/nar/30.7.1427
    • (2002) Nucleic Acids Res , vol.30 , pp. 1427-1464
    • Anantharaman, V.1    Koonin, E.V.2    Aravind, L.3
  • 24
    • 1842832249 scopus 로고    scopus 로고
    • Crystal structure of E. coliYhbY: a representative of a novel class of RNA binding proteins
    • COI: 1:CAS:528:DC%2BD38XoslGntL8%3D
    • Ostheimer GJ, Barkan A, Matthews BW: Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins. Structure (Camb). 2002, 10: 1593-1601. 10.1016/S0969-2126(02)00886-9. DOI: 10.1016/S0969-2126(02)00886-9
    • (2002) Structure (Camb) , vol.10 , pp. 1593-1601
    • Ostheimer, G.J.1    Barkan, A.2    Matthews, B.W.3
  • 25
    • 0037110588 scopus 로고    scopus 로고
    • Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae
    • PID: 12360533, COI: 1:CAS:528:DC%2BD38XosV2isbc%3D
    • Willis MA, Krajewski W, Chalamasetty VR, Reddy P, Howard A, Herzberg O: Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae. Proteins. 2002, 49: 423-426. 10.1002/prot.10225. DOI: 10.1002/prot.10225
    • (2002) Proteins , vol.49 , pp. 423-426
    • Willis, M.A.1    Krajewski, W.2    Chalamasetty, V.R.3    Reddy, P.4    Howard, A.5    Herzberg, O.6
  • 26
    • 0034844560 scopus 로고    scopus 로고
    • CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin
    • PID: 11565746, COI: 1:CAS:528:DC%2BD3MXmvFWisLw%3D
    • Till B, Schmitz-Linneweber C, Williams-Carrier R, Barkan A: CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin. RNA. 2001, 7: 1227-1238. 10.1017/S1355838201010445. DOI: 10.1017/S1355838201010445
    • (2001) RNA , vol.7 , pp. 1227-1238
    • Till, B.1    Schmitz-Linneweber, C.2    Williams-Carrier, R.3    Barkan, A.4
  • 27
    • 0036803105 scopus 로고    scopus 로고
    • Nucleosome-like complex of the histone from the hyperthermophile Methanopyrus kandleri(MkaH) with linear DNA
    • PID: 12354072, COI: 1:CAS:528:DC%2BD38Xos1Ckt78%3D
    • Pavlov NA, Cherny DI, Jovin TM, Slesarev AI: Nucleosome-like complex of the histone from the hyperthermophile Methanopyrus kandleri (MkaH) with linear DNA. J Biomol Struct Dyn. 2002, 20: 207-214. DOI: 10.1080/07391102.2002.10506836
    • (2002) J Biomol Struct Dyn , vol.20 , pp. 207-214
    • Pavlov, N.A.1    Cherny, D.I.2    Jovin, T.M.3    Slesarev, A.I.4
  • 28
    • 0026740718 scopus 로고
    • Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box
    • PID: 1628625, COI: 1:CAS:528:DyaK3sXisV2qtb0%3D
    • Kiledjian M, Dreyfuss G: Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 1992, 11: 2655-2664.
    • (1992) EMBO J , vol.11 , pp. 2655-2664
    • Kiledjian, M.1    Dreyfuss, G.2
  • 29
    • 0025857630 scopus 로고
    • Glycine loops in proteins: their occurrence in certain intermediate filament chains, loricrins and single-stranded RNA binding proteins
    • PID: 1716976, COI: 1:CAS:528:DyaK3MXltVylt7w%3D
    • Steinert PM, Mack JW, Korge BP, Gan SQ, Haynes SR, Steven AC: Glycine loops in proteins: their occurrence in certain intermediate filament chains, loricrins and single-stranded RNA binding proteins. Int J Biol Macromol. 1991, 13: 130-139. 10.1016/0141-8130(91)90037-U. DOI: 10.1016/0141-8130(91)90037-U
    • (1991) Int J Biol Macromol , vol.13 , pp. 130-139
    • Steinert, P.M.1    Mack, J.W.2    Korge, B.P.3    Gan, S.Q.4    Haynes, S.R.5    Steven, A.C.6
  • 30
    • 0035900649 scopus 로고    scopus 로고
    • Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
    • PID: 11719189, COI: 1:CAS:528:DC%2BD3MXovVCnsL0%3D
    • Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB: Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 2001, 107: 489-499. DOI: 10.1016/S0092-8674(01)00566-9
    • (2001) Cell , vol.107 , pp. 489-499
    • Darnell, J.C.1    Jensen, K.B.2    Jin, P.3    Brown, V.4    Warren, S.T.5    Darnell, R.B.6
  • 31
    • 0028957320 scopus 로고
    • In vivo and in vitroarginine methylation of RNA-binding proteins
    • PID: 7739561, COI: 1:CAS:528:DyaK2MXltFagtb0%3D
    • Liu Q, Dreyfuss G: In vivo and in vitro arginine methylation of RNA-binding proteins. Mol Cell Biol. 1995, 15: 2800-2808. DOI: 10.1128/MCB.15.5.2800
    • (1995) Mol Cell Biol , vol.15 , pp. 2800-2808
    • Liu, Q.1    Dreyfuss, G.2
  • 32
    • 0037145031 scopus 로고    scopus 로고
    • Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena
    • PID: 12297043, COI: 1:CAS:528:DC%2BD38XnsFKis7o%3D
    • Mochizuki K, Fine NA, Fujisawa T, Gorovsky MA: Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena. Cell. 2002, 110: 689-699. DOI: 10.1016/S0092-8674(02)00909-1
    • (2002) Cell , vol.110 , pp. 689-699
    • Mochizuki, K.1    Fine, N.A.2    Fujisawa, T.3    Gorovsky, M.A.4
  • 33
    • 17344375178 scopus 로고    scopus 로고
    • RNA silencing
    • PID: 11839284, COI: 1:CAS:528:DC%2BD38XhtlGgurw%3D
    • Baulcombe D: RNA silencing. Curr Biol. 2002, 12: R82-R84. 10.1016/S0960-9822(02)00665-6. DOI: 10.1016/S0960-9822(02)00665-6
    • (2002) Curr Biol , vol.12 , pp. R82-R84
    • Baulcombe, D.1
  • 34
    • 0034745504 scopus 로고    scopus 로고
    • Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
    • PID: 11157787, COI: 1:CAS:528:DC%2BD3MXht1GqtLs%3D
    • Koonin EV, Wolf YI, Aravind L: Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res. 2001, 11: 240-252. 10.1101/gr.162001. DOI: 10.1101/gr.162001
    • (2001) Genome Res , vol.11 , pp. 240-252
    • Koonin, E.V.1    Wolf, Y.I.2    Aravind, L.3
  • 35
    • 0036601353 scopus 로고    scopus 로고
    • Trends in protein evolution inferred from sequence and structure analysis
    • PID: 12127460, COI: 1:CAS:528:DC%2BD38Xlt1Shs78%3D
    • Aravind L, Mazumder R, Vasudevan S, Koonin EV: Trends in protein evolution inferred from sequence and structure analysis. Curr Opin Struct Biol. 2002, 12: 392-399. 10.1016/S0959-440X(02)00334-2. DOI: 10.1016/S0959-440X(02)00334-2
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 392-399
    • Aravind, L.1    Mazumder, R.2    Vasudevan, S.3    Koonin, E.V.4
  • 36
    • 0024283673 scopus 로고
    • Characterization of the chromosomal protein MC1 from the thermophilic archaebacterium Methanosarcinasp. CHTI 55 and its effect on the thermal stability of DNA
    • PID: 3142520, COI: 1:CAS:528:DyaL1MXjsFKjtw%3D%3D
    • Chartier F, Laine B, Sautiere P: Characterization of the chromosomal protein MC1 from the thermophilic archaebacterium Methanosarcina sp. CHTI 55 and its effect on the thermal stability of DNA. Biochim Biophys Acta. 1988, 951: 149-156. 10.1016/0167-4781(88)90035-8. DOI: 10.1016/0167-4781(88)90035-8
    • (1988) Biochim Biophys Acta , vol.951 , pp. 149-156
    • Chartier, F.1    Laine, B.2    Sautiere, P.3
  • 37
    • 0013550357 scopus 로고    scopus 로고
    • DNA bending induced by the archaebacterial histone-like protein MC1
    • PID: 9887264, COI: 1:STN:280:DyaK1M7ktFelsg%3D%3D
    • Cam EL, Culard F, Larquet E, Delain E, Cognet JA: DNA bending induced by the archaebacterial histone-like protein MC1. J Mol Biol. 1999, 285: 1011-1021. 10.1006/jmbi.1998.2321. DOI: 10.1006/jmbi.1998.2321
    • (1999) J Mol Biol , vol.285 , pp. 1011-1021
    • Cam, E.L.1    Culard, F.2    Larquet, E.3    Delain, E.4    Cognet, J.A.5
  • 38
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • PID: 9254694, COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. DOI: 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 39
    • 0030623948 scopus 로고    scopus 로고
    • SEALS: a system for easy analysis of lots of sequences
    • PID: 9322058, COI: 1:STN:280:DyaK2svmtlaktg%3D%3D
    • Walker DR, Koonin EV: SEALS: a system for easy analysis of lots of sequences. Proc Int Conf Intell Syst Mol Biol. 1997, 5: 333-339.
    • (1997) Proc Int Conf Intell Syst Mol Biol , vol.5 , pp. 333-339
    • Walker, D.R.1    Koonin, E.V.2
  • 40
    • 85182695703 scopus 로고    scopus 로고
    • SEALS. [http://www.ncbi.nlm.nih.gov/CBBresearch/Walker/SEALS/index.html]
    • SEALS.
  • 41
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • PID: 10964570, COI: 1:CAS:528:DC%2BD3cXmtVGntr8%3D
    • Notredame C, Higgins DG, Heringa J: T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol. 2000, 302: 205-217. 10.1006/jmbi.2000.4042. DOI: 10.1006/jmbi.2000.4042
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 43
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: molecular evolutionary genetics analysis software
    • PID: 11751241, COI: 1:CAS:528:DC%2BD38XmtVCktQ%3D%3D
    • Kumar S, Tamura K, Jakobsen IB, Nei M: MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 2001, 17: 1244-1245. 10.1093/bioinformatics/17.12.1244. DOI: 10.1093/bioinformatics/17.12.1244
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 44
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • PID: 11524383, COI: 1:STN:280:DC%2BD3MvotV2isw%3D%3D
    • Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754. DOI: 10.1093/bioinformatics/17.8.754
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 45
    • 0348044549 scopus 로고    scopus 로고
    • Genome trees constructed using five different approaches suggest new major bacterial clades
    • PID: 11734060, COI: 1:STN:280:DC%2BD3srgs1Wruw%3D%3D
    • Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV: Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol Biol. 2001, 1: 8-10.1186/1471-2148-1-8. DOI: 10.1186/1471-2148-1-8
    • (2001) BMC Evol Biol , vol.1 , pp. 8
    • Wolf, Y.I.1    Rogozin, I.B.2    Grishin, N.V.3    Tatusov, R.L.4    Koonin, E.V.5
  • 46
    • 0029901637 scopus 로고    scopus 로고
    • Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
    • PID: 8743697, COI: 1:CAS:528:DyaK28Xltl2nt7g%3D
    • Felsenstein J: Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 1996, 266: 418-427. DOI: 10.1016/S0076-6879(96)66026-1
    • (1996) Methods Enzymol , vol.266 , pp. 418-427
    • Felsenstein, J.1
  • 47
    • 0025873443 scopus 로고
    • On the maximum likelihood method in molecular phylogenetics
    • PID: 1904100, COI: 1:CAS:528:DyaK3MXit1GitLw%3D
    • Hasegawa M, Kishino H, Saitou N: On the maximum likelihood method in molecular phylogenetics. J Mol Evol. 1991, 32: 443-445. DOI: 10.1007/BF02101285
    • (1991) J Mol Evol , vol.32 , pp. 443-445
    • Hasegawa, M.1    Kishino, H.2    Saitou, N.3
  • 48
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
    • PID: 9504803, COI: 1:CAS:528:DyaK1cXhvFaks70%3D
    • Guex N, Peitsch MC: SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 1997, 18: 2714-2723. DOI: 10.1002/elps.1150181505
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 49
    • 0031865006 scopus 로고    scopus 로고
    • Touring protein fold space with Dali/FSSP
    • PID: 9399863, COI: 1:CAS:528:DyaK1cXovVChsQ%3D%3D
    • Holm L, Sander C: Touring protein fold space with Dali/FSSP. Nucleic Acids Res. 1998, 26: 316-319. 10.1093/nar/26.1.316. DOI: 10.1093/nar/26.1.316
    • (1998) Nucleic Acids Res , vol.26 , pp. 316-319
    • Holm, L.1    Sander, C.2
  • 50
    • 0029936121 scopus 로고    scopus 로고
    • Surprising similarities in structure comparison
    • PID: 8804824, COI: 1:CAS:528:DyaK28XjvFSgsLg%3D
    • Gibrat JF, Madej T, Bryant SH: Surprising similarities in structure comparison. Curr Opin Struct Biol. 1996, 6: 377-385. 10.1016/S0959-440X(96)80058-3. DOI: 10.1016/S0959-440X(96)80058-3
    • (1996) Curr Opin Struct Biol , vol.6 , pp. 377-385
    • Gibrat, J.F.1    Madej, T.2    Bryant, S.H.3
  • 51
    • 0026244229 scopus 로고
    • MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures
    • Kraulis PJ: MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures. Journal of App Crystallography. 1991, 24: 946-950. 10.1107/S0021889891004399. DOI: 10.1107/S0021889891004399
    • (1991) Journal of App Crystallography , vol.24 , pp. 946-950
    • Kraulis, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.