-
2
-
-
0035997350
-
Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes
-
Xiao S., Scott F., Fierke C.A., and Engelke D.R. Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes. Annu. Rev. Biochem. 71 (2002) 165-189
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 165-189
-
-
Xiao, S.1
Scott, F.2
Fierke, C.A.3
Engelke, D.R.4
-
3
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C., Gardiner K., Marsh T., Pace N., and Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35 (1983) 849-857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
4
-
-
0033529256
-
RNase P RNAs from some Archaea are catalytically active
-
Pannucci J.A., Haas E.S., Hall T.A., Harris J.K., and Brown J.W. RNase P RNAs from some Archaea are catalytically active. Proc. Natl Acad. Sci. U.S.A. 96 (1999) 7803-7808
-
(1999)
Proc. Natl Acad. Sci. U.S.A.
, vol.96
, pp. 7803-7808
-
-
Pannucci, J.A.1
Haas, E.S.2
Hall, T.A.3
Harris, J.K.4
Brown, J.W.5
-
5
-
-
0034538974
-
Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA
-
Frank D.N., Adamidi C., Ehringer M.A., Pitulle C., and Pace N.R. Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA. RNA 6 (2000) 1895-1904
-
(2000)
RNA
, vol.6
, pp. 1895-1904
-
-
Frank, D.N.1
Adamidi, C.2
Ehringer, M.A.3
Pitulle, C.4
Pace, N.R.5
-
6
-
-
0028962136
-
Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme
-
Pace N.R., and Brown J.W. Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J. Bacteriol. 177 (1995) 1919-1928
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1919-1928
-
-
Pace, N.R.1
Brown, J.W.2
-
7
-
-
0036231352
-
Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins
-
Hall T.A., and Brown J.W. Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA 8 (2002) 296-306
-
(2002)
RNA
, vol.8
, pp. 296-306
-
-
Hall, T.A.1
Brown, J.W.2
-
8
-
-
0043133471
-
Reconstitution of archaeal ribonuclease P from RNA and four protein subunits
-
Kouzuma Y., Mizoguchi M., Takagi H., Ukuhara H., Tsukamoto M., Numata T., and Kimura M. Reconstitution of archaeal ribonuclease P from RNA and four protein subunits. Biochem. Biophys. Res. Commun. 306 (2003) 666-673
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.306
, pp. 666-673
-
-
Kouzuma, Y.1
Mizoguchi, M.2
Takagi, H.3
Ukuhara, H.4
Tsukamoto, M.5
Numata, T.6
Kimura, M.7
-
9
-
-
0346734140
-
Structure of Mth11/Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P
-
Boomershine W.P., McElroy C.A., Tsai H.Y., Wilson R.C., Gopalan V., and Foster M.P. Structure of Mth11/Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P. Proc. Natl. Acad. Sci. U.S.A. 26 (2003) 15398-15403
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.26
, pp. 15398-15403
-
-
Boomershine, W.P.1
McElroy, C.A.2
Tsai, H.Y.3
Wilson, R.C.4
Gopalan, V.5
Foster, M.P.6
-
10
-
-
33344479270
-
Crystal Structure of Protein Ph1481p in Complex with Protein Ph1877p of Archaeal RNase P from Pyrococcus horikoshii OT3: Implication of Dimer Formation of the Holoenzyme
-
Kawano S., Nakashima T., Kakuta Y., Tanaka I., and Kimura M. Crystal Structure of Protein Ph1481p in Complex with Protein Ph1877p of Archaeal RNase P from Pyrococcus horikoshii OT3: Implication of Dimer Formation of the Holoenzyme. J. Mol. Biol. 2 (2006) 583-591
-
(2006)
J. Mol. Biol.
, vol.2
, pp. 583-591
-
-
Kawano, S.1
Nakashima, T.2
Kakuta, Y.3
Tanaka, I.4
Kimura, M.5
-
11
-
-
32344450242
-
Structure of Pfu Pop5, an archaeal RNase P protein
-
Wilson R.C., Bohlen C.J., Foster M.P., and Bell C.E. Structure of Pfu Pop5, an archaeal RNase P protein. Proc. Natl. Acad. Sci. U.S.A. 4 (2006) 873-878
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.4
, pp. 873-878
-
-
Wilson, R.C.1
Bohlen, C.J.2
Foster, M.P.3
Bell, C.E.4
-
12
-
-
2642635832
-
Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP
-
Chamberlain J.R., Lee Y., Lane W.S., and Engelke D.R. Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev. 12 (1998) 1678-1690
-
(1998)
Genes Dev.
, vol.12
, pp. 1678-1690
-
-
Chamberlain, J.R.1
Lee, Y.2
Lane, W.S.3
Engelke, D.R.4
-
13
-
-
0036210354
-
Human ribonuclease P: Subunits, function, and intranuclear localization
-
Jarrous N. Human ribonuclease P: Subunits, function, and intranuclear localization. RNA 8 (2002) 1-7
-
(2002)
RNA
, vol.8
, pp. 1-7
-
-
Jarrous, N.1
-
14
-
-
0141450351
-
The enigma of RNase P evolution
-
Hartmann E., and Hartmann R.K. The enigma of RNase P evolution. Trends Genet. 19 (2003) 561-569
-
(2003)
Trends Genet.
, vol.19
, pp. 561-569
-
-
Hartmann, E.1
Hartmann, R.K.2
-
15
-
-
33745166320
-
RNase P: interface of the RNA and protein worlds
-
Evans D., Marquez S.M., and Pace N.R. RNase P: interface of the RNA and protein worlds. Trends Biochem. Sci. 31 (2006) 333-341
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 333-341
-
-
Evans, D.1
Marquez, S.M.2
Pace, N.R.3
-
16
-
-
0242266622
-
Role of RNA and Protein Subunits of a Primordial Catalytic Ribonucleoprotein in RNA-Based Catalysis
-
Mann H., Ben-Asouli Y., Schein A., Moussa S., and Jarrous N. Role of RNA and Protein Subunits of a Primordial Catalytic Ribonucleoprotein in RNA-Based Catalysis. Mol. Cell 12 (2003) 925-935
-
(2003)
Mol. Cell
, vol.12
, pp. 925-935
-
-
Mann, H.1
Ben-Asouli, Y.2
Schein, A.3
Moussa, S.4
Jarrous, N.5
-
17
-
-
25144500661
-
RNase P: role of distinct protein cofactors in tRNA substrate recognition and RNA-based catalysis
-
Sharin E., Schein A., Mann H., Ben-Asouli Y., and Jarrous N. RNase P: role of distinct protein cofactors in tRNA substrate recognition and RNA-based catalysis. Nucleic Acids Res. 33 (2005) 5120-5132
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5120-5132
-
-
Sharin, E.1
Schein, A.2
Mann, H.3
Ben-Asouli, Y.4
Jarrous, N.5
-
18
-
-
27144527101
-
Protein activation of a ribozyme: the role of bacterial RNase P protein
-
Buck A.H., Dalby A.B., Poole A.W., Kasantsev A.V., and Pace N.R. Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J. 24 (2005) 3360-3368
-
(2005)
EMBO J.
, vol.24
, pp. 3360-3368
-
-
Buck, A.H.1
Dalby, A.B.2
Poole, A.W.3
Kasantsev, A.V.4
Pace, N.R.5
-
19
-
-
0028927259
-
Partial purification and characterization of RNase P from Dictyostelium discoideum
-
Stathopoulos C., Kalpaxis D.L., and Drainas D. Partial purification and characterization of RNase P from Dictyostelium discoideum. Eur. J. Biochem. 228 (1995) 976-980
-
(1995)
Eur. J. Biochem.
, vol.228
, pp. 976-980
-
-
Stathopoulos, C.1
Kalpaxis, D.L.2
Drainas, D.3
-
20
-
-
17844385813
-
Structural implications of novel diversity in eucaryal RNase P RNA
-
Marquez S.M., Harris J.K., Kelley S.T., Brown J.W., Dawson S.C., Roberts E.C., and Pace N.R. Structural implications of novel diversity in eucaryal RNase P RNA. RNA 11 (2005) 739-751
-
(2005)
RNA
, vol.11
, pp. 739-751
-
-
Marquez, S.M.1
Harris, J.K.2
Kelley, S.T.3
Brown, J.W.4
Dawson, S.C.5
Roberts, E.C.6
Pace, N.R.7
-
21
-
-
0030801002
-
Gapped BLAST and PSI BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
22
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
23
-
-
0043123167
-
Tools for comparative protein structure modelling and analysis
-
Eswar N., John B., Mirkovic N., Fiser A., Ilyin V.A., Pieper U., Stuart A.C., Marti-Renom M.A., Madhusudhan M.S., Yerkovich B., and Sali A. Tools for comparative protein structure modelling and analysis. Nucleic Acids Res. 31 (2003) 3375-3380
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3375-3380
-
-
Eswar, N.1
John, B.2
Mirkovic, N.3
Fiser, A.4
Ilyin, V.A.5
Pieper, U.6
Stuart, A.C.7
Marti-Renom, M.A.8
Madhusudhan, M.S.9
Yerkovich, B.10
Sali, A.11
-
24
-
-
2942532422
-
Development and testing of a general amber force field
-
Wang J., Wolf R.M., Caldwell J.W., Kollman P.A., and Case D.A. Development and testing of a general amber force field. J. Comput. Chem. 25 (2004) 1157-1174
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
25
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell W.D., Cieplak P., Bayly C.I., Gould I.R., Merz Jr. K.M., Ferguson D.M., Spellmeyer D.C., Fox T., Caldwell J.W., and Kollman P.A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117 (1995) 5179-5197
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
27
-
-
0030614558
-
Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P
-
Eder P.S., Kekuda R., Stolc V., and Altman S. Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P. Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 1101-1106
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 1101-1106
-
-
Eder, P.S.1
Kekuda, R.2
Stolc, V.3
Altman, S.4
-
28
-
-
0031278314
-
Rpp1, an essential protein subunit of nuclear RNase P required for processing of precursor tRNA and 35S precursor rRNA in Saccharomyces cerevisiae
-
Stolc V., and Altman S. Rpp1, an essential protein subunit of nuclear RNase P required for processing of precursor tRNA and 35S precursor rRNA in Saccharomyces cerevisiae. Genes Dev. 11 (1997) 2926-2937
-
(1997)
Genes Dev.
, vol.11
, pp. 2926-2937
-
-
Stolc, V.1
Altman, S.2
-
29
-
-
9144257886
-
The Pfam protein families database
-
Bateman A., Coin L., Durbin R., Finn R.D., Hollich V., Griffiths-Jones S., Khanna A., Moxon S., Sonnhammer E.L.L., Studholme D.J., et al. The Pfam protein families database. Nucleic Acids Res. 32 (2004) 138-141
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 138-141
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Moxon, S.8
Sonnhammer, E.L.L.9
Studholme, D.J.10
-
30
-
-
0001244666
-
ScanProsite: a reference implementation of a PROSITE scanning tool
-
Gattiker A., Gasteiger E., and Bairoch A. ScanProsite: a reference implementation of a PROSITE scanning tool. Appl. Bioinformatics 1 (2002) 107-108
-
(2002)
Appl. Bioinformatics
, vol.1
, pp. 107-108
-
-
Gattiker, A.1
Gasteiger, E.2
Bairoch, A.3
-
31
-
-
0034960193
-
Protein-RNA interactions in the subunits of human nuclear RNase, P
-
Jiang T., Guerrier-Takada C., and Altman S. Protein-RNA interactions in the subunits of human nuclear RNase, P. RNA 7 (2001) 937-941
-
(2001)
RNA
, vol.7
, pp. 937-941
-
-
Jiang, T.1
Guerrier-Takada, C.2
Altman, S.3
-
32
-
-
0036223840
-
Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P
-
Guerrier-Takada C., Eder P.S., Gopalan V., and Altman S. Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P. RNA 8 (2002) 290-295
-
(2002)
RNA
, vol.8
, pp. 290-295
-
-
Guerrier-Takada, C.1
Eder, P.S.2
Gopalan, V.3
Altman, S.4
-
33
-
-
2942627587
-
Crystal structure of the Ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
-
Takagi H., Watanabe M., Kakuta Y., Kamachi R., Numata T., Tanaka I., and Kimura M. Crystal structure of the Ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biochem. Biophys. Res. Commun. 319 (2004) 787-794
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.319
, pp. 787-794
-
-
Takagi, H.1
Watanabe, M.2
Kakuta, Y.3
Kamachi, R.4
Numata, T.5
Tanaka, I.6
Kimura, M.7
-
34
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding R., Russell R.B., Neduva V., and Gibson T.J. GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res. 13 (2003) 3701-3708
-
(2003)
Nucleic Acids Res.
, vol.13
, pp. 3701-3708
-
-
Linding, R.1
Russell, R.B.2
Neduva, V.3
Gibson, T.J.4
-
36
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N., Orengo C.A., and Thornton J.M. One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J. Mol. Biol. 321 (2003) 741-765
-
(2003)
J. Mol. Biol.
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
37
-
-
0031900726
-
Autoantigenic properties of some protein subunits of catalytically active complexes of human ribonuclease P
-
Jarrous N., Eder P.S., Guerrier-Takada C., Hoog C., and Altman S. Autoantigenic properties of some protein subunits of catalytically active complexes of human ribonuclease P. RNA 4 (1998) 407-417
-
(1998)
RNA
, vol.4
, pp. 407-417
-
-
Jarrous, N.1
Eder, P.S.2
Guerrier-Takada, C.3
Hoog, C.4
Altman, S.5
-
38
-
-
12844267400
-
3D models of yeast RNase P/MRP proteins Rpp1 and Pop3p
-
Dlakić M. 3D models of yeast RNase P/MRP proteins Rpp1 and Pop3p. RNA 11 (2005) 1-5
-
(2005)
RNA
, vol.11
, pp. 1-5
-
-
Dlakić, M.1
-
39
-
-
15744375062
-
Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component
-
Salinas K., Wierzbicki S., Zhou L., and Schmitt M.E. Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component. J. Biol. Chem. 12 (2005) 11352-11360
-
(2005)
J. Biol. Chem.
, vol.12
, pp. 11352-11360
-
-
Salinas, K.1
Wierzbicki, S.2
Zhou, L.3
Schmitt, M.E.4
-
40
-
-
18344395923
-
The genome of the social amoeba Dictyostelium discoideum
-
Eichinger L., et al. The genome of the social amoeba Dictyostelium discoideum. Nature 435 (2005) 43-57
-
(2005)
Nature
, vol.435
, pp. 43-57
-
-
Eichinger, L.1
|