Proteomics

Forum of Nutrition

Volumn 60, Issue , 2007, Pages 80-90

  Thongboonkerd, Visith ^a  

^a MAHIDOL UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

CONFERENCE PAPER; GENE EXPRESSION REGULATION; GENETICS; GENOMICS; HUMAN; MEDICAL RESEARCH; METHODOLOGY; MOLECULAR BIOLOGY; NUTRITION; PROTEOMICS;

BIOLOGICAL MARKERS; BIOMEDICAL RESEARCH; GENE EXPRESSION REGULATION; GENOMICS; HUMANS; MOLECULAR BIOLOGY; NUTRITION PHYSIOLOGY; PROTEOMICS;

EID: 34547969895     PISSN: 16600347     EISSN: None     Source Type: Book Series    
DOI: 10.1159/0000107076     Document Type: Conference Paper

References (64)

1. Cho A, Normile D: Nobel Prize in Chemistry. Mastering macromolecules. Science 2002;298:527-528.
2. Klein E, Klein JB, Thongboonkerd V: Two-dimensional gel electrophoresis: a fundamental tool for expression proteomics studies; in Thongboonkerd V, Klein JB (eds): Proteomics in Nephrology. Contrib Nephrol. Basel, Karger, 2004, vol 141, pp 25-39.
3. Henzel WJ, Watanabe C, Stults JT: Protein identification: the origins of peptide mass fingerprinting. J Am Soc Mass Spectrom 2003;14:931-942.
4. Pierce WM, Cai J: Applications of mass spectrometry in proteomics; in Thongboonkerd V, Klein JB (eds): Proteomics in Nephrology. Contrib Nephrol. Basel, Karger, 2004, vol 141, pp 40-58.
5. Karas M, Gluckmann M, Schafer J: Ionization in matrix-assisted laser desorption/ionization: singly charged molecular ions are the lucky survivors. J Mass Spectrom 2000;35:1-12.
6. McCormack AL, Schieltz DM, Goode B, Yang S, Barnes G, Drubin D, Yates JR 3rd: Direct analysis and identification of proteins in mixtures by LC/MS/MS and. database searching at the lowfemtomole level. Anal Chem 1997;69:767-776.
7. Wu CC, MacCoss MJ, Howell KE, Yates JR 3rd: A method for the comprehensive proteomic analysis of membrane proteins. Nat Biotechnol 2003;21:532-538.
8. Gygi SP, Rist B, Griffin TJ, Eng J, Aebersold R: Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. J Proteome Res 2002;1:47-54.
9. Washburn MP, Wolters D, Yates JR 3rd: Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001;19:242-247.
10. Mabuchi H, Nakahashi H: Profiling of urinary medium-sized peptides in normal and uremic urine by high-performance liquid chromatography. J Chromatogr 1982;233:107-113.
11. Heine G, Raida M, Forssmann WG: Mapping of peptides and protein fragments in human urine using liquid, chromatography-mass spectrometry. J Chromatogr A 1997;776:117-124.
12. Jensen PK, Pasa-Tolic L, Peden KK, Martinovic S, Lipton MS, Anderson GA, Tolic N, Wong KK, Smith RD: Mass spectrometric detection for capillary isoelectric focusing separations of complex protein mixtures. Electrophoresis 2000;21:1372-1380.
13. Gelpi E: Interfaces for coupled liquid-phase separation/mass spectrometry techniques, An update on recent developments. J Mass Spectrom 2002;37:241-253.
14. Schmitt-Kopplin P, Frommberger M: Capillary electrophoresis-mass spectrometry: 15 years of developments and applications. Electrophoresis 2003;24:3837-3867.
15. Hernandez-Borges J, Neususs C, Cifuentes A, Pelzing M: On-line capillary electrophoresis-mass spectrometry for the analysis of biomolecules. Electrophoresis 2004;25:2257-2281.
16. Kolch W, Neususs C, Pelzing M, Mischak H: Capillary electrophoresis-mass spectrometry as a powerful tool in clinical diagnosis and biomarker discovery. Mass Spectrom Rev 2005;24:959-977.
17. Simpson DC, Smith RD: Combining capillary electrophoresis with mass spectrometry for applications in proteomics. Electrophoresis 2005;26:1291-1305.
18. Musyimi HK, Narcisse DA, Zhang X, Stryjewski W, Soper SA, Murray KK: Online CE-MALDITOF MS using a rotating ball interface. Anal Chem 2004;76:5968-5973.
19. Zuberovic A, Ullsten S, Hellman U, Markides KE, Bergquist J: Capillary electrophoresis off-line matrix-assisted laser desorption/ionisation mass spectrometry of intact and digested proteins using cationic-coated capillaries. Rapid. Commun Mass Spectrom 2004;18:2946-2952.
20. Nelson RW, Krone JR, Bieber AL, Williams P: Mass spectrometric immunoassay. Anal Chem 1995;67:1153-1158.
21. Nelson RW, Krone JR, Dogruel D, Tubbs KA, Granzow R, Jansson O: Interfacing biomolecular interaction analysis with mass spectrometry and the use of bioreactive mass spectrometer probe tips in protein characterization; in Marshak DR (ed.): Techniques in Protein Chemistry. San Diego, Academic Press, 1997, vol 8, pp 493-504.
22. Krone JR, Nelson RW, Williams P: Mass spectrometric immunoassay. Proc Soc Photo Opt Instrum Eng 1996;2680:415-421.
23. Tubbs KA, Nedelkov D, Nelson RW: Detection and quantification of beta-2-microglobulin using mass spectrometric immunoassay. Anal Biochem 2001;289:26-35.
24. Niederkofler EE, Tubbs KA, Gruber K, Nedelkov D, Kiernan UA, Williams P, Nelson RW: Determination of beta-2 microglobulin levels in plasma using a high-throughput mass spectrometric immunoassay system. Anal Chem 2001;73:3294-3299.
25. Niederkofler EE, Tubbs KA, Kiernan UA, Nedelkov D, Nelson RW: Novel mass spectrometric immunoassays for the rapid structural characterization of plasma apolipoproteins, J Lipid. Res 2003;44:630-639.
26. Kiernan UA, Nedelkov D, Tubbs KA, Niederkofler EE, Nelson RW: Selected expression profiling of full-length proteins and their variants inhuman plasma. Clin Proteomics 2004;1:7-16.
27. Kiernan UA, Nedelkov D, Tubbs KA, Niederkofler EE, Nelson RW: Proteomic characterization of novel serum amyloid P component variants from human plasma and urine. Proteomics 2004;4:1825-1829.
28. Kiernan UA, Tubbs KA, Gruber K, Nedelkov D, Niederkofler EE, Williams P, Nelson RW: Highthroughput protein characterization using mass spectrometric immunoassay, Anal Biochem 2002;301:49-56.
29. Kiernan UA, Tubbs KA, Nedelkov D, Niederkofler EE, McConnell E, Nelson RW: Comparative urine protein phenotyping using mass spectrometric immunoassay. J Proteome Res 2003;2:191-197.
30. Kiernan UA, Tubbs KA, Nedelkov D, Niederkofler EE, Nelson RW: Comparative phenotypic analyses of human plasma and urinary retinol binding protein using mass spectrometric immunoassay. Biochem Biophys Res Commun 2002;297:401-405.
31. Kiernan UA, Tubbs KA, Nedelkov D, Niederkofler EE, Nelson RW: Detection of novel truncated forms of human serum amyloid A protein in human plasma. FEBS Lett 2003;537:166-170.
32. Nedelkov D, Tubbs KA, Niederkofler EE, Kiernan UA, Nelson RW: High-throughput comprehensive analysis of human plasma proteins: a step toward population proteomics. Anal Chem 2004;76:1733-1737.
33. Nelson RW, Nedelkov D, Tubbs KA, Kiernan UA: Quantitative mass spectrometric immunoassay of insulin like growth factor 1. J Proteome Res 2004;3:851-855.
34. Nelson RW, McLean MA, Hutchens TW: Quantitative determination of proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal Chem 1994;66:1408-1415.
35. Daniel H: Genomics and proteomics: importance for the future of nutrition research. Br J Nutr 2002;87(suppl 2):S305-S311.
36. Go VL, Butrum RR, Wong DA: Diet, nutrition, and cancer prevention: the postgenomic era. J Nutr 2003;133:3830S-3836S.
37. Milner JA: Molecular targets for bioactive food components. JNutr 2004;134:2492S-2498S.
38. Kim H, Page GP, Barnes S: Proteomics and mass spectrometry in nutrition research. Nutrition 2004;20:155-165.
39. Arab L: Individualized nutritional recommendations: do we have the measurements needed to assess risk and make dietary recommendations? Proc Nutr Soc 2004;63:167-172.
40. Ross SA, Srinivas PR, Clifford AJ, Lee SC, Philbert MA, Hettich RL: New technologies for nutrition research. J Nutr 2004;134:681-685.
41. Barnes S, Kim H: Nutriproteomics: identifying the molecular targets of nutritive and non-nutritive components of the diet. J Biochem Mol Biol 2004;37:59-74.
42. Davis CD, Milner J: Frontiers in nutrigenomics, proteomics, metabolomics and cancer prevention. Mutat Res 2004;551:51-64.
43. Davis CD, Hord NG: Nutritional 'omics' technologies for elucidating the role(s) of bioactive food components in colon cancer prevention. J Nutr 2005;135:2694-2697.
44. Kim H: New nutrition, proteomics, and how both can enhance studies in cancer prevention and therapy, J Nutr 2005;135:2715-2718.
45. Fuchs D, Winkelmann I, Johnson IT, Mariman E, Wenzel U, Daniel H: Proteomics in nutrition research: principles, technologies and applications. Br J Nutr 2005;94:302-314.
46. Thongboonkerd V, Chutipongtanate S, Kanlaya R, Songtawee N, Sinchaikul S, Parichatikanond P, Chen ST, Malasit P: Proteomic identification of alterations in metabolic enzymes and signaling proteins in hypokalemic nephropathy. Proteomics 2006;6:2273-2285.
47. Mitchell BL, Yasui Y, Lampe JW, Gafken PR, Lampe PD: Evaluation of matrix-assisted laser desorption/ionization-time of flight mass spectrometry proteomic profiling: identification of alpha 2-HS glycoprotein B-chain as a biomarker of diet. Proteomics 2005;5:2238-2246.
48. Gennari FJ: Hypokalemia, N Engl J Med 1998;339:451-458.
49. Gennari FJ: Disorders of potassium homeostasis. Hypokalemia and hyperkalemia. Crit Care Clin 2002;18:273-288, vi.
50. Antes LM, Kujubu DA, Fernandez PC: Hypokalemia and the pathology of ion transport molecules. Semin Nephrol 1998;18:31-45.
51. Relman AS, Schwartz WB: The nephropathy of potassium depletion: a clinical and pathological entity. N Engl J Med 1956;255:195-203.
52. Hollander W Jr: The effect of potassium depletion on the kidneys. N C Med J 1957;18:505-509.
53. Weissmann G, Ludwig AM: Potassium depletion nephropathy. J Mt Sinai Hosp NY 1958;25:454-158.
54. Tolins JP, Hostetter MK, Hostetter TH: Hypokalemic nephropathy in the rat. Role of ammonia in chronic tubular injury, J Clin Invest 1987;79:1447-1458.
55. Berl T, Linas SL, Aisenbrey GA, Anderson RJ: On the mechanism of polyuria in potassium depletion, The role of polydipsia, J Clin Invest 1977;60:620-625.
56. Ray PE, Suga S, Liu XH, Huang X, Johnson RJ: Chronic potassium depletion induces renal injury, salt sensitivity, and hypertension in young rats. Kidney Int 2001;59:1850-1858.
57. Kaufman AM, Kahn T: Potassium-depletion alkalosis in the rat. Am J Physiol 1988;255:F763-F770.
58. Peterson LN, Carpenter B, Guttierrez GA, Fajardo C, Levine DZ: Potassium depletion enhances renal compensatory hypertrophy in the nephrectomized rat. Miner Electrolyte Metab 1987;13:57-62.
59. Stetson DL, Wade JB, Giebisch G: Morphologic alterations in the rat medullary collecting duct following potassium depletion. Kidney Int 1980;17:45-56.
60. Ordonez NG, Toback FG, Aithal HN, Spargo BJ: Zonal changes in renal structure and phospholipid metabolism during reversal of potassium depletion nephropathy. Lab Invest 1977;36:33-47.
61. Fourman P, McCance RA, Parker RA: Chronic renal disease in rats following a temporary deficiency of potassium. Br J Exp Pathol 1956;37:40-43.
62. Morel NM, Holland JM, van der Greef J, Marple EW, Clish C, Loscalzo J, Naylor S: Primer on medical genomics, 14. Introduction to systems biology - a new approach to understanding disease and treatment. Mayo Clin Proc 2004;79:651-658.
63. Ge H, Walhout AJ, Vidal M: Integrating 'omic' information: a bridge between genomics and systems biology. Trends Genet 2003;19:551-560.
64. Weston AD, Hood L: Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine. J Proteome Res 2004;3:179-196.