-
1
-
-
0033552961
-
-
Alm, R. A., Ling, L. S., Moir, D. T., King, B. L., Brown, E. D., Doig, P. C., Smith, D. R., Noonan, B., Guild, B. C. & other authors (1999). Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397, 176-180.
-
Alm, R. A., Ling, L. S., Moir, D. T., King, B. L., Brown, E. D., Doig, P. C., Smith, D. R., Noonan, B., Guild, B. C. & other authors (1999). Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397, 176-180.
-
-
-
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0024554174
-
The great GATC: DNA methylation in E. coli
-
Barras, F. & Marinus, M. G. (1989). The great GATC: DNA methylation in E. coli. Trends Genet 5, 139-143.
-
(1989)
Trends Genet
, vol.5
, pp. 139-143
-
-
Barras, F.1
Marinus, M.G.2
-
4
-
-
0033036197
-
Molecular phylogenetics of DNA 5mC-methyltransferases
-
Bujnicki, J. M. & Radlinska, M. (1999). Molecular phylogenetics of DNA 5mC-methyltransferases. Acta Microbiol Pol 48, 19-30.
-
(1999)
Acta Microbiol Pol
, vol.48
, pp. 19-30
-
-
Bujnicki, J.M.1
Radlinska, M.2
-
5
-
-
4644293305
-
-
Chain, P. S., Carniel, E., Larimer, F. W., Lamerdin, J., Stoutland, P. O., Regala, W. M., Georgescu, A. M., Vergez, L. M., Land, M. L. & other authors (2004). Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 101, 13826-13831.
-
Chain, P. S., Carniel, E., Larimer, F. W., Lamerdin, J., Stoutland, P. O., Regala, W. M., Georgescu, A. M., Vergez, L. M., Land, M. L. & other authors (2004). Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 101, 13826-13831.
-
-
-
-
6
-
-
0025269104
-
A highly efficient electroporation system for transformation of Yersinia
-
Conches, R. F. & Carniel, E. (1990). A highly efficient electroporation system for transformation of Yersinia. Gene 87, 133-137.
-
(1990)
Gene
, vol.87
, pp. 133-137
-
-
Conches, R.F.1
Carniel, E.2
-
7
-
-
0142059349
-
A rapid and simple method for inactivating chromosomal genes in Yersinia
-
Derbise, A., Lesic, B., Dacheux, D., Ghigo, J. M. & Carniel, E. (2003). A rapid and simple method for inactivating chromosomal genes in Yersinia. FEMS Immunol Med Microbiol 38, 113-116.
-
(2003)
FEMS Immunol Med Microbiol
, vol.38
, pp. 113-116
-
-
Derbise, A.1
Lesic, B.2
Dacheux, D.3
Ghigo, J.M.4
Carniel, E.5
-
8
-
-
33749621059
-
2+ regulation of Yop secretion in Yersinia enterocolitica after DNA adenine methyltransferase overproduction is mediated by Clp-dependent degradation of LcrG
-
2+ regulation of Yop secretion in Yersinia enterocolitica after DNA adenine methyltransferase overproduction is mediated by Clp-dependent degradation of LcrG. J Bacteriol 188, 7072-7081.
-
(2006)
J Bacteriol
, vol.188
, pp. 7072-7081
-
-
Falker, S.1
Schmidt, M.A.2
Heusipp, G.3
-
9
-
-
0032728707
-
Post-segregational killing by restriction modification gene complexes: Observations of individual cell deaths
-
Hands, N. & Kobayashi, I. (1999). Post-segregational killing by restriction modification gene complexes: observations of individual cell deaths. Biochimie 81, 931-938.
-
(1999)
Biochimie
, vol.81
, pp. 931-938
-
-
Hands, N.1
Kobayashi, I.2
-
10
-
-
0034034023
-
Cellular responses to post-segregational killing by restriction-modification genes
-
Hands, N., Ichige, A., Kusano, K. & Kobayashi, I. (2000). Cellular responses to post-segregational killing by restriction-modification genes. J. Bacteriol 182, 2218-2229.
-
(2000)
J. Bacteriol
, vol.182
, pp. 2218-2229
-
-
Hands, N.1
Ichige, A.2
Kusano, K.3
Kobayashi, I.4
-
11
-
-
0035004723
-
Experimental genome evolution: Large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex
-
Handa, N., Nakayama, Y., Sadykov, M. & Kobayashi, I. (2001). Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex. Mol Microbiol 40, 932-940.
-
(2001)
Mol Microbiol
, vol.40
, pp. 932-940
-
-
Handa, N.1
Nakayama, Y.2
Sadykov, M.3
Kobayashi, I.4
-
12
-
-
0033532378
-
An essential role for DNA adenine methylation in bacterial virulence
-
Heithoff, D. M., Sinsheimer, R. L., Low, D. A. & Mahan, M. J. (1999). An essential role for DNA adenine methylation in bacterial virulence. Science 284, 967-970.
-
(1999)
Science
, vol.284
, pp. 967-970
-
-
Heithoff, D.M.1
Sinsheimer, R.L.2
Low, D.A.3
Mahan, M.J.4
-
13
-
-
0034778412
-
Salmonella DNA adenine methylase mutants confer cross-protective immunity
-
Heithoff, D. M., Enioutina, E. Y., Daynes, R. A., Sinsheimer, R. L., Low, D. A. & Mahan, M. J. (2001). Salmonella DNA adenine methylase mutants confer cross-protective immunity. Infect Immun 69, 6725-6730.
-
(2001)
Infect Immun
, vol.69
, pp. 6725-6730
-
-
Heithoff, D.M.1
Enioutina, E.Y.2
Daynes, R.A.3
Sinsheimer, R.L.4
Low, D.A.5
Mahan, M.J.6
-
14
-
-
0027422635
-
On the origins, structures and functions of restriction-modification enzymes
-
Heitman, J. (1993). On the origins, structures and functions of restriction-modification enzymes. Genet Eng (N Y) 15, 57-108.
-
(1993)
Genet Eng (N Y)
, vol.15
, pp. 57-108
-
-
Heitman, J.1
-
15
-
-
33846432037
-
DNA adenine methylation and bacterial pathogenesis
-
Heusipp, G., Falker, S. & Alexander Schmidt, M. (2007). DNA adenine methylation and bacterial pathogenesis. Int J Med Microbiol 297, 1-7.
-
(2007)
Int J Med Microbiol
, vol.297
, pp. 1-7
-
-
Heusipp, G.1
Falker, S.2
Alexander Schmidt, M.3
-
16
-
-
0141742352
-
Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis
-
Hinchliffe, S. J., Isherwood, K. E., Stabler, R. A., Prentice, M. B., Rakin, A., Nichols, R. A., Oyston, P. C., Hinds, J., Titball, R. W. & Wren, B. W. (2003). Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis. Genome Res 13, 2018-2029.
-
(2003)
Genome Res
, vol.13
, pp. 2018-2029
-
-
Hinchliffe, S.J.1
Isherwood, K.E.2
Stabler, R.A.3
Prentice, M.B.4
Rakin, A.5
Nichols, R.A.6
Oyston, P.C.7
Hinds, J.8
Titball, R.W.9
Wren, B.W.10
-
17
-
-
0342618322
-
A ColE1-type plasmid from Salmonella enteritidis encodes a DNA cytosine methyltransferase
-
Ibanez, M., Alvarez, I., Rodriguez-Pena, J. M. & Rotger, R. (1997). A ColE1-type plasmid from Salmonella enteritidis encodes a DNA cytosine methyltransferase. Gene 196, 145-158.
-
(1997)
Gene
, vol.196
, pp. 145-158
-
-
Ibanez, M.1
Alvarez, I.2
Rodriguez-Pena, J.M.3
Rotger, R.4
-
18
-
-
0242353167
-
Maintenance of species identity and controlling speciation of bacteria: A new function for restriction/ modification systems?
-
Jeltsch, A. (2003). Maintenance of species identity and controlling speciation of bacteria: a new function for restriction/ modification systems? Gene 317, 13-16.
-
(2003)
Gene
, vol.317
, pp. 13-16
-
-
Jeltsch, A.1
-
19
-
-
0029940857
-
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems
-
Jeltsch, A. & Pingoud, A. (1996). Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. J Mol Evol 42, 91-96.
-
(1996)
J Mol Evol
, vol.42
, pp. 91-96
-
-
Jeltsch, A.1
Pingoud, A.2
-
20
-
-
0028998049
-
Evidence for an evolutionary relationship among type-II restriction endonucleases
-
Jeltsch, A., Kroger, M. & Pingoud, A. (1995). Evidence for an evolutionary relationship among type-II restriction endonucleases. Gene 160, 7-16.
-
(1995)
Gene
, vol.160
, pp. 7-16
-
-
Jeltsch, A.1
Kroger, M.2
Pingoud, A.3
-
21
-
-
0035179775
-
DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae
-
Julio, S. M., Heithoff, D. M, Provenzano, D., Klose, K. E., Sinsheimer, R. L., Low, D. A. & Mahan, M. J. (2001). DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae. Infect Immun 69, 7610-7615.
-
(2001)
Infect Immun
, vol.69
, pp. 7610-7615
-
-
Julio, S.M.1
Heithoff, D.M.2
Provenzano, D.3
Klose, K.E.4
Sinsheimer, R.L.5
Low, D.A.6
Mahan, M.J.7
-
22
-
-
0036153535
-
DNA adenine methylase overproduction in Yersinia pseudotuberculosis alters YopE expression and secretion and host immune responses to infection
-
Julio, S. M., Heithoff, D. M., Sinsheimer, R. L., Low, D. A. & Mahan, M. J. (2002). DNA adenine methylase overproduction in Yersinia pseudotuberculosis alters YopE expression and secretion and host immune responses to infection. Infect Immun 70, 1006-1009.
-
(2002)
Infect Immun
, vol.70
, pp. 1006-1009
-
-
Julio, S.M.1
Heithoff, D.M.2
Sinsheimer, R.L.3
Low, D.A.4
Mahan, M.J.5
-
23
-
-
0025136271
-
Specificity of restriction endonucleases and DNA modification methyltransferases: A review
-
Edition 3
-
Kessler, C. & Manta, V. (1990). Specificity of restriction endonucleases and DNA modification methyltransferases: a review (Edition 3). Gene 92, 1-248.
-
(1990)
Gene
, vol.92
, pp. 1-248
-
-
Kessler, C.1
Manta, V.2
-
24
-
-
0035883519
-
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
-
Kobayashi, I. (2001). Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res 29, 3742-3756.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3742-3756
-
-
Kobayashi, I.1
-
25
-
-
0034284411
-
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
-
Kong, H., Lin, L. F., Porter, N., Stickel, S., Byrd, D., Posfai, J. & Roberts, R. J. (2000). Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res 28, 3216-3223.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3216-3223
-
-
Kong, H.1
Lin, L.F.2
Porter, N.3
Stickel, S.4
Byrd, D.5
Posfai, J.6
Roberts, R.J.7
-
26
-
-
0028803767
-
Restriction-modification systems as genomic parasites in competition for specific sequences
-
Kusano, K., Naito, T., Handa, N. & Kobayashi, I. (1995). Restriction-modification systems as genomic parasites in competition for specific sequences. Proc Natl Acad Sci U S A 92, 11095-11099.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 11095-11099
-
-
Kusano, K.1
Naito, T.2
Handa, N.3
Kobayashi, I.4
-
27
-
-
0024202695
-
Functions of the DnaA protein of Escherichia coli in replication and transcription
-
Messer, W., Seufert W., Schaefer, C., Gielow, A., Hartmann, H. & Wends, M. (1988). Functions of the DnaA protein of Escherichia coli in replication and transcription. Biochim Biophys Acta 951, 351-358.
-
(1988)
Biochim Biophys Acta
, vol.951
, pp. 351-358
-
-
Messer, W.1
Seufert, W.2
Schaefer, C.3
Gielow, A.4
Hartmann, H.5
Wends, M.6
-
28
-
-
0036146923
-
2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: Self versus non-self
-
Murray, N. E. (2002). 2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: self versus non-self. Microbiology 148, 3-20.
-
(2002)
Microbiology
, vol.148
, pp. 3-20
-
-
Murray, N.E.1
-
29
-
-
0028901038
-
Selfish behavior of restriction-modification systems
-
Naito, T., Kusano, K. & Kobayashi, I. (1995). Selfish behavior of restriction-modification systems. Science 267, 897-899.
-
(1995)
Science
, vol.267
, pp. 897-899
-
-
Naito, T.1
Kusano, K.2
Kobayashi, I.3
-
30
-
-
0034707207
-
Diversity of restriction-modification gene homologues in Helicobacter pylori
-
Nobusato, A., Uchiyama, I. & Kobayashi, I. (2000a). Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene 259, 89-98.
-
(2000)
Gene
, vol.259
, pp. 89-98
-
-
Nobusato, A.1
Uchiyama, I.2
Kobayashi, I.3
-
31
-
-
0034707190
-
Insertion with long target duplication: A mechanism for gene mobility suggested from comparison of two related bacterial genomes
-
Nobusato, A., Uchiyama, I., Ohashi, S. & Kobayashi, I. (2000b). Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes. Gene 259, 99-108.
-
(2000)
Gene
, vol.259
, pp. 99-108
-
-
Nobusato, A.1
Uchiyama, I.2
Ohashi, S.3
Kobayashi, I.4
-
32
-
-
0027356555
-
Methylation of DNA in prokaryotes
-
Noyer-Weidner, M. & Trautner, T. A. (1993). Methylation of DNA in prokaryotes. EXS 64, 39-108.
-
(1993)
EXS
, vol.64
, pp. 39-108
-
-
Noyer-Weidner, M.1
Trautner, T.A.2
-
33
-
-
0036366541
-
Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli
-
Oshima, T., Wada, C., Kawagoe, Y., Ara, T., Maeda, M., Masuda, Y., Hiraga, S. & Mori, H. (2002). Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol Microbiol 45, 673-695.
-
(2002)
Mol Microbiol
, vol.45
, pp. 673-695
-
-
Oshima, T.1
Wada, C.2
Kawagoe, Y.3
Ara, T.4
Maeda, M.5
Masuda, Y.6
Hiraga, S.7
Mori, H.8
-
34
-
-
0033056990
-
Characterization of a dam mutant of Serratia marcescens and nucleotide sequence of the dam region
-
Ostendorf, T., Cherepanov, P., de Vries, J. & Wackernagel, W. (1999). Characterization of a dam mutant of Serratia marcescens and nucleotide sequence of the dam region. J. Bacteriol 181, 3880-3885.
-
(1999)
J. Bacteriol
, vol.181
, pp. 3880-3885
-
-
Ostendorf, T.1
Cherepanov, P.2
de Vries, J.3
Wackernagel, W.4
-
35
-
-
0035807385
-
Genome sequence of Yersinia pestis, the causative agent of plague
-
Parkhill, J., Wren, B. W., Thomson, N. R., Titball, R. W., Holden, M. T., Prentice, M. B., Sebaihia, M., James, K. D., Churcher, C. & other authors (2001). Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413, 523-527.
-
(2001)
Nature
, vol.413
, pp. 523-527
-
-
Parkhill, J.1
Wren, B.W.2
Thomson, N.R.3
Titball, R.W.4
Holden, M.T.5
Prentice, M.B.6
Sebaihia, M.7
James, K.D.8
Churcher, C.9
-
36
-
-
27744442147
-
Evaluation of O-antigen inactivation on Pla activity and virulence of Yersinia pseudotuberculosis harbouring the pPla plasmid
-
Pouillot F., Derbise, A., Kukkonen, M., Foulon, J., Korhonen, T. K. & Carniel, E (2005). Evaluation of O-antigen inactivation on Pla activity and virulence of Yersinia pseudotuberculosis harbouring the pPla plasmid. Microbiology 151, 3759-3768.
-
(2005)
Microbiology
, vol.151
, pp. 3759-3768
-
-
Pouillot, F.1
Derbise, A.2
Kukkonen, M.3
Foulon, J.4
Korhonen, T.K.5
Carniel, E.6
-
37
-
-
0036225054
-
Envelope instability in DNA adenine methylase mutants of Salmonella enterica
-
Pucciarelli, M. G., Prieto, A. I., Casadesus, J. & Garcia-del Portillo, F. (2002). Envelope instability in DNA adenine methylase mutants of Salmonella enterica. Microbiology 148, 1171-1182.
-
(2002)
Microbiology
, vol.148
, pp. 1171-1182
-
-
Pucciarelli, M.G.1
Prieto, A.I.2
Casadesus, J.3
Garcia-del Portillo, F.4
-
38
-
-
33745158157
-
A simple method of estimating fifty per cent endpoints
-
Reed, L. J. & Muench, H. (1935). A simple method of estimating fifty per cent endpoints. Am J Hyg 27, 493-497.
-
(1935)
Am J Hyg
, vol.27
, pp. 493-497
-
-
Reed, L.J.1
Muench, H.2
-
39
-
-
0031865014
-
REBASE - restriction enzymes and methylases
-
Roberts, R. J. & Macelis, D. (1998). REBASE - restriction enzymes and methylases. Nucleic Acids Res 26, 338-350.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 338-350
-
-
Roberts, R.J.1
Macelis, D.2
-
40
-
-
27444433158
-
A dam mutant of Yersinia pestis is attenuated and induces protection against plague
-
Robinson, V. L., Oyston, P. C. & Titball, R. W. (2005). A dam mutant of Yersinia pestis is attenuated and induces protection against plague. FEMS Microbiol Lett 252, 251-256.
-
(2005)
FEMS Microbiol Lett
, vol.252
, pp. 251-256
-
-
Robinson, V.L.1
Oyston, P.C.2
Titball, R.W.3
-
41
-
-
2442549510
-
S-Adenosyl-L-methionine-dependent restriction enzymes
-
Sistia, S. & Rao, D. N. (2004). S-Adenosyl-L-methionine-dependent restriction enzymes. Crit Rev Biochem Mol Biol 39, 1-19.
-
(2004)
Crit Rev Biochem Mol Biol
, vol.39
, pp. 1-19
-
-
Sistia, S.1
Rao, D.N.2
-
42
-
-
21344442880
-
Oral immunization with a dam mutant of Yersinia pseudotuberculosis protects against plague
-
Taylor, V. L., Titball, R. W. & Oyston, P. C. (2005). Oral immunization with a dam mutant of Yersinia pseudotuberculosis protects against plague. Microbiology 151, 1919-1926.
-
(2005)
Microbiology
, vol.151
, pp. 1919-1926
-
-
Taylor, V.L.1
Titball, R.W.2
Oyston, P.C.3
-
43
-
-
22544464152
-
The biology of restriction and anti-restriction
-
Tock, M. R. & Dryden, D. T. (2005). The biology of restriction and anti-restriction. Curr Opin Microbiol 8, 466-472.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 466-472
-
-
Tock, M.R.1
Dryden, D.T.2
-
44
-
-
33646008874
-
6-methyl-adenine: An epigenetic signal for DNA-protein interactions
-
6-methyl-adenine: an epigenetic signal for DNA-protein interactions. Nat Rev Microbiol 4, 183-192.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 183-192
-
-
Wion, D.1
Casadesus, J.2
|