-
1
-
-
3242883431
-
PRED-TMBB: A web server for predicting the topology of beta-barrel outer membrane proteins
-
Bagos, P.G. et al. (2004) PRED-TMBB: A web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res., 32, W400-W404.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bagos, P.G.1
-
2
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi, P. and Long, A.D. (2001) A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes. Bioinformatics, 17, 509-519.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
4
-
-
33748748033
-
Analysis of human leukaemias and lymphomas using extensive immunopbenotypes from an antibody microarray
-
Belov et al. (2006) Analysis of human leukaemias and lymphomas using extensive immunopbenotypes from an antibody microarray. Br. J. Haematol., 135, 184-197.
-
(2006)
Br. J. Haematol
, vol.135
, pp. 184-197
-
-
Belov1
-
5
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J.D. et al. (2004) Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol., 340, 783-795.
-
(2004)
J. Mol. Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
-
6
-
-
29644437923
-
GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: Potential role in interactions with the host and the gastric pathogen Helicobacter pylori
-
Bergonzelli, G.E. et al. (2006) GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: Potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect. Immun, 74, 425-434.
-
(2006)
Infect. Immun
, vol.74
, pp. 425-434
-
-
Bergonzelli, G.E.1
-
7
-
-
33646856024
-
Avoiding model selection bias in small-sample genomic datasets
-
Berrar, D. et al. (2006) Avoiding model selection bias in small-sample genomic datasets. Bioinformatics, 22, 1245-1250.
-
(2006)
Bioinformatics
, vol.22
, pp. 1245-1250
-
-
Berrar, D.1
-
8
-
-
3042678854
-
Predicting transmembrane beta-barrels in proteomes
-
Bigelow, H.R. et al. (2004) Predicting transmembrane beta-barrels in proteomes. Nucleic Acids Res., 32, 2566-2577.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2566-2577
-
-
Bigelow, H.R.1
-
9
-
-
33646377150
-
Protein arrays and pattern recognition: New tools to assist in the identification and management of autoimmune disease
-
Bindcr, S.R. et al. (2006) Protein arrays and pattern recognition: new tools to assist in the identification and management of autoimmune disease. Autoimmun. Rev., 5, 234-241.
-
(2006)
Autoimmun. Rev
, vol.5
, pp. 234-241
-
-
Bindcr, S.R.1
-
10
-
-
5644277479
-
Rapid screening of highly efficient vaccine candidates by immunoproteomics
-
Chen, Z. et al. (2004) Rapid screening of highly efficient vaccine candidates by immunoproteomics. Proteomics, 4, 3203-3213.
-
(2004)
Proteomics
, vol.4
, pp. 3203-3213
-
-
Chen, Z.1
-
11
-
-
22144461265
-
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
-
Choe, S.E. et al. (2005) Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol. 6, R16.
-
(2005)
Genome Biol
, vol.6
-
-
Choe, S.E.1
-
12
-
-
17644397901
-
Surface analyses and immune reactivities of major cell wall-associated proteins of group A Streptococcus
-
Cole, J.N. et al. (2005) Surface analyses and immune reactivities of major cell wall-associated proteins of group A Streptococcus. Infect Immun., 73, 3137-3146.
-
(2005)
Infect Immun
, vol.73
, pp. 3137-3146
-
-
Cole, J.N.1
-
13
-
-
0242495755
-
Cutting edge: Long-term B cell memory in humans after smallpox vaccination
-
Crotty, S. et al. (2003) Cutting edge: Long-term B cell memory in humans after smallpox vaccination. J. Immunol., 171, 4969-4973.
-
(2003)
J. Immunol
, vol.171
, pp. 4969-4973
-
-
Crotty, S.1
-
14
-
-
20044369888
-
Profiling the humoral immune response to infection, by using proteome microarrays: High-throughput vaccine and diagnostic antigen discovery
-
Davies, D.H. et al. (2005a) Profiling the humoral immune response to infection, by using proteome microarrays: High-throughput vaccine and diagnostic antigen discovery. Proc. Natl Acad. Sci. USA, 102 547-552.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 547-552
-
-
Davies, D.H.1
-
15
-
-
24644490503
-
Vaccinia virus H3L envelope protein is a major target of neutralizing antibodies in humans and elicits protection against lethal challenge in mice
-
Davies, D.H. et al. (2005b) Vaccinia virus H3L envelope protein is a major target of neutralizing antibodies in humans and elicits protection against lethal challenge in mice. J. Virol., 79, 11724-11733.
-
(2005)
J. Virol
, vol.79
, pp. 11724-11733
-
-
Davies, D.H.1
-
16
-
-
0035816032
-
Tularemia as a biological weapon: Medical and public health management
-
Dennis, D.T. et al. (2001) Tularemia as a biological weapon: medical and public health management. Jama, 285, 2763-2773.
-
(2001)
Jama
, vol.285
, pp. 2763-2773
-
-
Dennis, D.T.1
-
17
-
-
17644384367
-
Minimum redundancy feature selection from microarray gene expression data
-
Ding, C. and Peng, H. (2005) Minimum redundancy feature selection from microarray gene expression data. J. Bioinform. Comput. Biol., 3 185-205.
-
(2005)
J. Bioinform. Comput. Biol
, vol.3
, pp. 185-205
-
-
Ding, C.1
Peng, H.2
-
18
-
-
10744220951
-
Utilization of genomic sequence information to develop malaria vaccines
-
Doolan, D.L. et al. (2003) Utilization of genomic sequence information to develop malaria vaccines. J. Exp. Biol., 206, 3789-3802.
-
(2003)
J. Exp. Biol
, vol.206
, pp. 3789-3802
-
-
Doolan, D.L.1
-
19
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin, B. et al. (2002) A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics, 18, S105-S110.
-
(2002)
Bioinformatics
, vol.18
-
-
Durbin, B.1
-
20
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit, S. et al. (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. J. Am. Stat. Assoc., 97, 77-87.
-
(2002)
J. Am. Stat. Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
-
21
-
-
0036780908
-
Tularemia
-
Ellis, J. et al. (2002) Tularemia. Clin. Microbiol. Rev., 15, 631-646.
-
(2002)
Clin. Microbiol. Rev
, vol.15
, pp. 631-646
-
-
Ellis, J.1
-
22
-
-
33645462222
-
Direct repeat mediated deletion of a Type IV pilin gene results in major virulence attenuation of Francisella tularensis
-
Forslund, A.-L. et al. (2006) Direct repeat mediated deletion of a Type IV pilin gene results in major virulence attenuation of Francisella tularensis. Mol. Microbiol., 59, 1818-1830.
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1818-1830
-
-
Forslund, A.-L.1
-
23
-
-
0031692318
-
Surface-associated hsp60 chaperonin of Legionella pneumophila mediates invasion in a HeLa cell model
-
Garduno, R.A. et al. (1998) Surface-associated hsp60 chaperonin of Legionella pneumophila mediates invasion in a HeLa cell model. Infect. Immun., 66, 4602-4610.
-
(1998)
Infect. Immun
, vol.66
, pp. 4602-4610
-
-
Garduno, R.A.1
-
24
-
-
15844431346
-
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
-
Gardy, J.L. et al. (2005) PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics, 21, 617-623.
-
(2005)
Bioinformatics
, vol.21
, pp. 617-623
-
-
Gardy, J.L.1
-
25
-
-
23144440152
-
TMB-Hunt: A web server to screen sequence sets for transmembrane beta-barrel proteins
-
Garrow, A.G. et al. (2005) TMB-Hunt: A web server to screen sequence sets for transmembrane beta-barrel proteins. Nucleic Acids Res., 33, W188-W192.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Garrow, A.G.1
-
26
-
-
33750464521
-
Use of protein microarrays to define the humoral immune response in leprosy patients and identification of disease-state-specific antigenic profiles
-
Groathouse et al. (2006) Use of protein microarrays to define the humoral immune response in leprosy patients and identification of disease-state-specific antigenic profiles. Infect. Immun., 74 6458-6466.
-
(2006)
Infect. Immun
, vol.74
, pp. 6458-6466
-
-
Groathouse1
-
27
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Gohib, T.R. et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286, 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Gohib, T.R.1
-
28
-
-
0037323928
-
Differential analysis of DNA microarray gene expression data
-
Hatfield, G.W. et al. (2002) Differential analysis of DNA microarray gene expression data. Mol. Microb., 47, 871-877.
-
(2002)
Mol. Microb
, vol.47
, pp. 871-877
-
-
Hatfield, G.W.1
-
29
-
-
11244346557
-
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression, Suppl, S96-S104ISMB
-
Huber, W. et al. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18 (Suppl.), S96-S104(ISMB 2002).
-
(2002)
Bioinformatics
, vol.18
-
-
Huber, W.1
-
30
-
-
0037174983
-
Global gene expression profiling in Escherichia coli K12: The effects of leucine-responsive regulatory protein
-
Hung, S.-P. et al. (2002) Global gene expression profiling in Escherichia coli K12: The effects of leucine-responsive regulatory protein. J. Biol. Chem., 277, 40309-40323.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 40309-40323
-
-
Hung, S.-P.1
-
31
-
-
20444366966
-
Vaccination strategies for Francisella tularensis
-
Isherwood, K.E. et al. (2005) Vaccination strategies for Francisella tularensis. Adv. Drug Deriv. Rev., 57, 1403-1414.
-
(2005)
Adv. Drug Deriv. Rev
, vol.57
, pp. 1403-1414
-
-
Isherwood, K.E.1
-
32
-
-
0033626293
-
Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated auxotrophic vaccine
-
Karlsson, J. et al. (2000) Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated auxotrophic vaccine. Microb. Comp. Genomics, 5, 25-39.
-
(2000)
Microb. Comp. Genomics
, vol.5
, pp. 25-39
-
-
Karlsson, J.1
-
33
-
-
0035910270
-
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L.L. (2001), Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes, J. Mol. Biol., 305, 567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
-
34
-
-
13944273799
-
The complete genome sequence of Francisella tularensis, the causative agent of tularemia
-
Larsson, P. et al. (2005) The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nat. Genet., 37, 153-159.
-
(2005)
Nat. Genet
, vol.37
, pp. 153-159
-
-
Larsson, P.1
-
35
-
-
0038729565
-
Classification of multiple cancer types by multicategory support vector machines using gene expression data
-
Lee, Y. and Lee, C.K. (2003) Classification of multiple cancer types by multicategory support vector machines using gene expression data. Bioinformatics, 19, 1132-1139.
-
(2003)
Bioinformatics
, vol.19
, pp. 1132-1139
-
-
Lee, Y.1
Lee, C.K.2
-
36
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
Long, A.D. et al. (2001) Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem., 276, 19937-19944.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
-
38
-
-
0042847140
-
Inference for generalization error
-
Nadeau, C. and Bengio, Y. (2003) Inference for generalization error. Mach. Learn., 52, 239-281.
-
(2003)
Mach. Learn
, vol.52
, pp. 239-281
-
-
Nadeau, C.1
Bengio, Y.2
-
39
-
-
0036740519
-
Multi-class cancer classification via partial least squares with gene expression profiles
-
Nguyen, D.V. and Rocke, D.M. (2002) Multi-class cancer classification via partial least squares with gene expression profiles. Bioinformalics, 18, 1216-1226.
-
(2002)
Bioinformalics
, vol.18
, pp. 1216-1226
-
-
Nguyen, D.V.1
Rocke, D.M.2
-
40
-
-
33749347870
-
Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence
-
Petrosino, J.F. et al. (2006) Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. J. Bacteriol., 188, 6977-6985.
-
(2006)
J. Bacteriol
, vol.188
, pp. 6977-6985
-
-
Petrosino, J.F.1
-
41
-
-
0034785966
-
Preliminary analysis and annotation of the partial genome sequence of Francisella tularensis strain Schu 4
-
Prior, R.G. et al. (2001) Preliminary analysis and annotation of the partial genome sequence of Francisella tularensis strain Schu 4. J. Appl. Microbiol., 91, 1-7.
-
(2001)
J. Appl. Microbiol
, vol.91
, pp. 1-7
-
-
Prior, R.G.1
-
42
-
-
0035684378
-
A model for measurement errors for gene expression arrays
-
Rocke, D.M. and Durbin, B. (2001) A model for measurement errors for gene expression arrays. J. Comput. Biol., 8, 557-569.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
43
-
-
33747886203
-
Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques
-
Sundaresh, S. et al. (2006) Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques. Bioinformatics, 22, 1760-1766.
-
(2006)
Bioinformatics
, vol.22
, pp. 1760-1766
-
-
Sundaresh, S.1
-
44
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani, R. et al. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl Acad. Sci. USA, 99, 6567-6572.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
-
45
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G. et al. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci, 98, 5116-5121.
-
(2001)
Proc. Natl Acad. Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
-
47
-
-
25444491937
-
Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines
-
Wang, J. et al. (2005) Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines. BMC Bioinform., 6, 174.
-
(2005)
BMC Bioinform
, vol.6
, pp. 174
-
-
Wang, J.1
|