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Volumn 23, Issue 13, 2007, Pages

A physical model for tiling array analysis

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; PROTEIN P53; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR MYC; TRANSCRIPTION FACTOR SP1; UNCLASSIFIED DRUG;

EID: 34547840259     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm167     Document Type: Conference Paper
Times cited : (8)

References (19)
  • 1
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 2
    • 33745140886 scopus 로고    scopus 로고
    • Unbiased location analysis of e2fl-binding sites suggests a widespread role for e2f1 in the human genome
    • Bieda,M. et al. (2006) Unbiased location analysis of e2fl-binding sites suggests a widespread role for e2f1 in the human genome. Genome Res., 16, 595-605.
    • (2006) Genome Res , vol.16 , pp. 595-605
    • Bieda, M.1
  • 3
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding rnas
    • Cawley,S. et al. (2004) Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding rnas. Cell, 116, 499-509.
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1
  • 4
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • Crooks,G.E. et al. (2004) WebLogo: A sequence logo generator. Genome Res, 14, 1188-90.
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1
  • 5
    • 0026849821 scopus 로고
    • Definition of a consensus binding site for p53
    • elDeiry,W. et al. (1992) Definition of a consensus binding site for p53. Nat Genet., 1, 45-9.
    • (1992) Nat Genet , vol.1 , pp. 45-49
    • elDeiry, W.1
  • 6
    • 2542584654 scopus 로고    scopus 로고
    • Detection of functional dna motifs via statistical over-representation
    • Frith,M.C. et al. (2004) Detection of functional dna motifs via statistical over-representation. Nucleic Acids Res., 32, 1372-1381.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1372-1381
    • Frith, M.C.1
  • 7
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison,C.T. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104,
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1
  • 8
    • 0037388263 scopus 로고    scopus 로고
    • Absolute mrna concentrations from sequence-specific calibration of oligonucleotide arrays
    • Hekstra,D. et al. (2003) Absolute mrna concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res., 31, 1962-1968.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1962-1968
    • Hekstra, D.1
  • 9
    • 24644462724 scopus 로고    scopus 로고
    • Tilemap: Create chromosomal map of tiling array hybridizations
    • Ji,H. and Wong,W.H. (2005) Tilemap: Create chromosomal map of tiling array hybridizations. Bioinformatics, 21, 3629-3636.
    • (2005) Bioinformatics , vol.21 , pp. 3629-3636
    • Ji, H.1    Wong, W.H.2
  • 10
    • 33747587864 scopus 로고    scopus 로고
    • Model-based analysis of tiling-arrays for chip-chip
    • Johnson,W.E. et al. (2006) Model-based analysis of tiling-arrays for chip-chip. Proc. Natl Acad. Sci. USA, 103, 12457-12462.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 12457-12462
    • Johnson, W.E.1
  • 11
    • 33744473305 scopus 로고    scopus 로고
    • Multiple testing methods for chip-chip high density oligonucleotide array data
    • Keles,S. et al. (2006) Multiple testing methods for chip-chip high density oligonucleotide array data. J. Comput. Biol., 13, 579-613.
    • (2006) J. Comput. Biol , vol.13 , pp. 579-613
    • Keles, S.1
  • 12
    • 24644438062 scopus 로고    scopus 로고
    • A hidden markov model for analyzing chip-chip experiments on genome tiling arrays and its application to p53 binding sequences
    • Li,W. et al. (2005) A hidden markov model for analyzing chip-chip experiments on genome tiling arrays and its application to p53 binding sequences. Bioinformatics, 21 (Suppl. 1), i274-i282.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Li, W.1
  • 13
    • 0142027777 scopus 로고    scopus 로고
    • Distribution of nf-kappab-binding sites across human chromosome 22
    • Martone,R. et al. (2003) Distribution of nf-kappab-binding sites across human chromosome 22. Proc. Natl Acad. Sci. USA, 100, 12247-12252.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 12247-12252
    • Martone, R.1
  • 14
    • 33846700587 scopus 로고    scopus 로고
    • Predicting transcription factor affinities to DNA from a biophysical model
    • Roider,H.G. et al. (2007) Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics, 23 134-41.
    • (2007) Bioinformatics , vol.23 , pp. 134-141
    • Roider, H.G.1
  • 15
    • 0347125328 scopus 로고    scopus 로고
    • Jaspar: An open-access database for eukaryotic transcription factor binding profiles
    • Sandelin,A. et al. (2004) Jaspar: An open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32,D91-D94.
    • (2004) Nucleic Acids Res , vol.32
    • Sandelin, A.1
  • 16
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide dna nearest-neighbor thermodynamics
    • SantaLucia,J. (1998) A unified view of polymer, dumbbell, and oligonucleotide dna nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia, J.1
  • 17
    • 23844551199 scopus 로고    scopus 로고
    • Stochastic models inspired by hybridization theory for short oligonucleotide arrays
    • Wu,Z. and Irizarry,R.A. (2005) Stochastic models inspired by hybridization theory for short oligonucleotide arrays. J. Comput. Biol., 12, 882-893.
    • (2005) J. Comput. Biol , vol.12 , pp. 882-893
    • Wu, Z.1    Irizarry, R.A.2
  • 18
    • 33845187907 scopus 로고    scopus 로고
    • Global mapping of c-myc binding sites and target gene networks in human b cells
    • Zeller,K.I. et al. (2006) Global mapping of c-myc binding sites and target gene networks in human b cells. Proc. Natl Acad. Sci. USA. 103, 17834-17839.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 17834-17839
    • Zeller, K.I.1
  • 19
    • 0038729666 scopus 로고    scopus 로고
    • A model of molecular interactions on short oligonucleotide microarrays
    • Zhang,L. et al. (2003) A model of molecular interactions on short oligonucleotide microarrays. Nat. Biotechnol., 21, 818-821.
    • (2003) Nat. Biotechnol , vol.21 , pp. 818-821
    • Zhang, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.