-
1
-
-
0038204408
-
Phylogeny for the faint of heart: A tutorial
-
Baldauf S.L. (2003): Phylogeny for the faint of heart: a tutorial. Trends Genet., 19: 345-351.
-
(2003)
Trends Genet
, vol.19
, pp. 345-351
-
-
Baldauf, S.L.1
-
2
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten J. (2005): A review of long-branch attraction. Cladistics, 21: 163-193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
3
-
-
0029936482
-
Systematics of Euro-mediterranean silene (Caryophyllaceae): Evidence from a phylogenetic analysis using ITS sequences
-
Desfeux C., Lejeune B. (1996): Systematics of Euro-mediterranean silene (Caryophyllaceae): Evidence from a phylogenetic analysis using ITS sequences. Life Sci., 319: 351-358.
-
(1996)
Life Sci
, vol.319
, pp. 351-358
-
-
Desfeux, C.1
Lejeune, B.2
-
4
-
-
14644430471
-
PROBCONS: Probabilistic consistency-based multiple sequence alignment
-
Do C.B., Mahabhashyam M.S.P., Brudno M., Batzoglou S. (2005): PROBCONS: Probabilistic consistency-based multiple sequence alignment. Genome Res., 15: 330-340.
-
(2005)
Genome Res
, vol.15
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
5
-
-
0033955274
-
Evolution of genes and taxa: A primer
-
Doyle J.J., Gaut B.S. (2000): Evolution of genes and taxa: a primer. Plant Mol. Biol., 42: 1-23.
-
(2000)
Plant Mol. Biol
, vol.42
, pp. 1-23
-
-
Doyle, J.J.1
Gaut, B.S.2
-
6
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. (2004): MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
7
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. (1985): Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
8
-
-
0003991673
-
-
Sinauer Associates, Sanderland, Massachusets
-
Felsenstein J. (2004): Inferring Phylogenies. Sinauer Associates, Sanderland, Massachusets.
-
(2004)
Inferring Phylogenies
-
-
Felsenstein, J.1
-
9
-
-
0030464460
-
SeaView and PhyloWien, two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N., Gouy M., Gautier C. (1996): SeaView and PhyloWien, two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci., 12: 543-548.
-
(1996)
Comput. Appl. Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
10
-
-
34948890180
-
-
Hall T.A. (1999): Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98NT. Nucleic Acids Symp. Ser. 41: 95-98.
-
Hall T.A. (1999): Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98NT. Nucleic Acids Symp. Ser. 41: 95-98.
-
-
-
-
11
-
-
33644858749
-
A step by step guide to phylogeny reconstruction
-
Harrison C.J., Langdale J.A. (2006): A step by step guide to phylogeny reconstruction. Plant J., 45: 561-572.
-
(2006)
Plant J
, vol.45
, pp. 561-572
-
-
Harrison, C.J.1
Langdale, J.A.2
-
12
-
-
12044253190
-
An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analyses
-
Hillis D.M., Bull J.J. (1993): An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analyses. Syst. Biol., 42: 182-192.
-
(1993)
Syst. Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
13
-
-
34948897185
-
Phylogeny estimation: Traditional and Bayesian inference of phylogenetic trees
-
Holder M., Lewis P.O. (2003): Phylogeny estimation: traditional and Bayesian inference of phylogenetic trees. Bioinformatics, 17: 754-755.
-
(2003)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Holder, M.1
Lewis, P.O.2
-
14
-
-
0036806280
-
Potential applications and pitfalls of Bayesian inference of phylogeny
-
Huelsenbeck J.P.H., Larget B., Miller R.E., Ronquist F. (2002): Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol., 51: 673-688.
-
(2002)
Syst. Biol
, vol.51
, pp. 673-688
-
-
Huelsenbeck, J.P.H.1
Larget, B.2
Miller, R.E.3
Ronquist, F.4
-
15
-
-
0034733685
-
Accomodating phylogenetic uncertainty in evolutionary studies
-
Huelsenbeck J.P., Rannala B., Masly J.P. (2000): Accomodating phylogenetic uncertainty in evolutionary studies. Science, 288: 2349-2350.
-
(2000)
Science
, vol.288
, pp. 2349-2350
-
-
Huelsenbeck, J.P.1
Rannala, B.2
Masly, J.P.3
-
16
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogeny
-
Huelsenbeck I.P., Ronquist F. (2001): MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, I.P.1
Ronquist, F.2
-
17
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K., Misawa K., Kuma K., Miyata T. (2002): MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30: 3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
18
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment briefings
-
Kumar S., Tamura K., Nei M. (2004): MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment briefings. Bioinformatics, 5: 150-163.
-
(2004)
Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
19
-
-
0034623005
-
T-Coffee: A novel method for multiple sequence alignments
-
Notredame C., Higgins D., Heringa J. (2000): T-Coffee: A novel method for multiple sequence alignments. J. Mol. Biol., 302: 205-217.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
21
-
-
0029853148
-
WWW-Query: An online retrieval system for biological sequence banks
-
Perrière G., Gouy M. (1996): WWW-Query: An online retrieval system for biological sequence banks. Biochimie, 78: 364-369.
-
(1996)
Biochimie
, vol.78
, pp. 364-369
-
-
Perrière, G.1
Gouy, M.2
-
22
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4: 406-25.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
23
-
-
0042695888
-
The challenge of constructing large phylogenetic trees
-
Sanderson M.J., Driskell A.C. (2003): The challenge of constructing large phylogenetic trees. Trends Plant Sci., 8: 374-379.
-
(2003)
Trends Plant Sci
, vol.8
, pp. 374-379
-
-
Sanderson, M.J.1
Driskell, A.C.2
-
24
-
-
0033785582
-
A fundamental problem with amino-acid-sequence characters for phylogenetic analyses
-
Simmons M.P. (2000): A fundamental problem with amino-acid-sequence characters for phylogenetic analyses. Cladistics, 16: 274-282.
-
(2000)
Cladistics
, vol.16
, pp. 274-282
-
-
Simmons, M.P.1
-
25
-
-
0036058310
-
Artifacts of coding amino acids and other composite characters for phylogenetic analysis
-
Simmons M.P., Freudenstein J.V. (2002): Artifacts of coding amino acids and other composite characters for phylogenetic analysis. Cladistics, 18: 354-365.
-
(2002)
Cladistics
, vol.18
, pp. 354-365
-
-
Simmons, M.P.1
Freudenstein, J.V.2
-
26
-
-
4644350604
-
Genome-scale data, angiosperm relationships, and 'ending incongruence': A cautionary tale in phylogenetics
-
Soltis D.E., Albert V.A., Savolainen V., Hilu K., Qiu Y.L., Chase M.W., Farris J.S., Stefanovié S., Rice D.W., Palmer J.D., Soltis P.S. (2004): Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci., 9: 477-483.
-
(2004)
Trends Plant Sci
, vol.9
, pp. 477-483
-
-
Soltis, D.E.1
Albert, V.A.2
Savolainen, V.3
Hilu, K.4
Qiu, Y.L.5
Chase, M.W.6
Farris, J.S.7
Stefanovié, S.8
Rice, D.W.9
Palmer, J.D.10
Soltis, P.S.11
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. (1994): CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
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