Host effect on the molecular and biological properties of a Citrus exocortis viroid isolate from Vicia faba

Phytopathology

Volumn 97, Issue 8, 2007, Pages 1004-1010

  Gandía, Mónica ^a   Bernad, Lucía ^a   Rubio, Luis ^a   Duran Vila, Núria ^a  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CITRUS; CITRUS EXOCORTIS; CITRUS EXOCORTIS VIROID; LYCOPERSICON ESCULENTUM; VICIA FABA; VIROIDS;

EID: 34547741714     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-97-8-1004     Document Type: Article

References (35)

1. Benton, R. J., Bowman, F. T., Fraser, L., and Kebby, R. G. 1949. Selection of citrus budwood to control scaly butt in trifoliata rootstock. Agric. Gaz. N.S. Wales 60:31-34.
2. Benton, R. J., Bowman, F. T., Fraser, L., and Kebby, R. G. 1950. Stunting and scaly butt associated with Poncirus trifoliata rootstock. N. S. Wales Dep. Agric. Sci. Bull. 70:1-20.
3. Bernad, L., Gandía, M., and Duran-Vila, N. 2006. Host effect on the genetic variability of Citrus exocortis viroid (CEVd). Pages 291-300 in: Proc. 16th IOCV Conf. IOCV, Riverside, CA.
4. De Rijk, P., and De Wachter, R. 1997. RnaViz, a program for the visualization of RNA secondary structure. Nucleic Acids Res. 25(22):4679-4684.
5. Fagoaga, C., and Duran-Vila, N. 1996. Naturally occurring variants of citrus exocortis viroid in vegetable crops. Plant Pathol. 45:45-53.
6. Fagoaga, C., Semancik, J. S., and Duran-Vila, N. 1995. A citrus exocortis viroid variant from broad bean (Vicia faba L.): Infectivity and pathogenesis. J. Gen. Virol. 76:2271-2277.
7. Fawcett, H. S., and Klotz, L. J. 1948. Exocortis on trifoliate orange. Citrus Leaves 28:8.
8. Flores, R., Duran-Vila, N., Pallás, V., and Semancik, J. S. 1985. Detection of viroid and viroid-like RNAs from grapevine. J. Gen. Virol. 66:2095-2102.
9. Gandía, M., Rubio, L., Palacio, A., and Duran-Vila, N. 2005. Genetic variation and population structure of an isolate of Citrus exocortis viroid (CEVd) and of the progenies of two infectious sequences variants. Arch. Virol. 150:1945-1957.
10. Garcia-Arenal, F., Pallas, V., and Flores, R. 1987. The sequence of a viroid from grapevine closely related to severe isolates of citrus exocortis viroid. Nucleic Acids Res. 15:4203-4210.
11. Cast, F. U., Kempe, D., Spieker, R. L., and Sanger, H. L. 1996. Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base pairs, large A-rich loops, and a terminal branch. J. Mol. Biol. 262:652-670.
12. Igloi, G. L. 1983. Silver stain for the detection of nanogram amounts of tRNA following two-dimensional electrophoresis. Anal. Biochem. 134:184-188.
13. Jukes, T. H., and Cantor, C. R. 1969. Evolution of protein molecules. Pages 21-132 in: Mammalian Protein Metabolism. H. N. Munro, ed. Academic Press, New York.
14. Kumar, S., Tamura, K., and Nei, M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinf. 5:150-163.
15. Mishra, M. D., Hammond, R. W., Owens, R. A., Smith, D. R., and Diener, T. O. 1991. Indian bunchy top disease of tomato plants is caused by a distinct strain of citrus exocortis viroid. J. Gen. Virol. 72:1781-1785.
16. Moreira, S. 1955. Sintomas de "exocortis" em limoneiro cravo. Bragantia 14:19-21.
17. Morris, T. J., and Wright, N. S. 1975. Detection on polyacrylamide gel of a diagnostic nucleic acid from tissue infected with potato spindle tuber viroid. Am. Potato J. 52:57-63.
18. Owens, R. A., Steger, G., Hu, Y., Fels, A., Hammond, R. A., and Riesner, D. 1996. RNA structural features responsible for potato spindle tuber viroid pathogenicity. Virology 222:144-158.
19. Owens, R. A., Thompson, S. M., and Kramer, M. 2003. Identification of neutral mutants surrounding two naturally occurring variants of potato spindle tuber viroid. J. Gen. Virol. 84:751-756.
20. Palacio, A., and Duran-Vila, N. 1999. Single-strand conformation polymorphism (SSCP) analysis as a tool for viroid characterisation. J. Virol. Methods 77:27-36.
21. Palacio, A., Foissac, X., and Duran-Vila, N. 2000. Indexing of citrus viroids by imprint hybridisation. Eur. J. Plant Pathol. 105:897-903.
22. Rivera-Bustamante, R. F., Gin, R., and Semancik, J. S. 1986. Enhanced resolution of circular and linear molecular forms of viroid and viroid-like RNA by electrophoresis in a discontinuous-pH system. Anal. Biochem. 156:91-95.
23. Rozas, J., and Rozas, R. 1999. DNASP version 3: An integrated program for molecular population genetic and molecular evolution analysis. Bioinformatics 15:174-175.
24. Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
25. Sambrook, J., Fristch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
26. Sanger, H. L., Ramm, K., Domdey, H., Gross, H. J., Henco, K., and Riesner, D. 1979. Conversion of circular viroid molecules to linear strands. FEBS Lett. 99:117-121.
27. Semancik, J. S., Morris, T. J., Weathers, L. G., Rordorf, G. F., and Kearns, D. R. 1975. Physical properties of a minimal infectious RNA (viroid) associated with the exocortis disease. Virology 63:160-167.
28. Semancik, J. S., Szychowski, J. A., Rakowski, A. G., and Symons, R. H. 1993. Isolates of citrus exocortis viroid recovered by host and tissue selection. J. Gen. Virol. 74:2427-2436.
29. Semancik, J. S., and Weathers, L. G. 1972. Exocortis virus: An infectious free-nucleic acid plant virus with unusual properties. Virology 47:456-466.
30. Szychowski, J. A., Vidalakis, G., and Semancik, J. S. 2005. Host-directed processing of Citrus exocortis viroid. J. Gen. Virol. 86:473-477.
31. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W. Improving the sensitivity of progressive multiple sequences alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
32. Van Dorst, H. J. M., and Peters, D. 1974. Some biological observations on pale fruit, a viroid-incited disease of cucumber. Neth. J. Plant Pathol. 80:85-96.
33. Visvader, J. E., Gould, A. R., Bruening, G. E., and Symons, R. H. 1982. Citrus exocortis viroid: nucleotide sequence and secondary structure of an Australian isolate. FEBS Lett. 137(2):288-292.
34. Visvader, J. E., and Symons, R. H. 1985. Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity. Nucleic Acids Res. 13(8):2907-2920.
35. Zuker, M., Mathews, D. H., and Turner, D. H. 1999. Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide in RNA Biochemistry and Biotechnology, J. Barciszewski and B. F. C. Clark, eds. NATO ASI Series, Kluwer Academic Publishers, Dordrecht, The Netherlands.