메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Patterned sequence in the transcriptome of vascular plants

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA MINISATELLITE; GUANINE; NUCLEOTIDE; TRANSCRIPTOME; UBIQUITIN; MICROSATELLITE DNA;

EID: 34547733933     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-173     Document Type: Article
Times cited : (6)

References (47)
  • 1
    • 0024387394 scopus 로고
    • Hypervariability of simple sequences as a general source of polymorphic DNA markers
    • 318341
    • Tautz D Hypervariability of simple sequences as a general source of polymorphic DNA markers Nucleic Acids Res 1989, 17: 6463-6471 318341 2780284 10.1093/nar/17.16.6463
    • (1989) Nucleic Acids Res , vol.17 , pp. 6463-6471
    • Tautz, D.1
  • 2
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n(dG-dT)n polymorphisms
    • 10.1016/0888-7543(90)90195-Z
    • Weber JL Informativeness of human (dC-dA)n(dG-dT)n polymorphisms Genomics 1990, 7: 524-530 10.1016/0888-7543(90)90195-Z 1974878
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 3
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • 10.1023/A:1014875206165
    • Kantety RV La Rota M Matthews DE Sorrells ME Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat Plant Mol Biol 2002, 48: 501-510 10.1023/ A:1014875206165 11999831
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 4
    • 0036935201 scopus 로고    scopus 로고
    • Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources
    • 10.1007/s00122-001-0775-2
    • Areshchenkova T Ganal MW Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources Theor Appl Genet 2002, 104: 229-235 10.1007/ s00122-001-0775-2 12582691
    • (2002) Theor Appl Genet , vol.104 , pp. 229-235
    • Areshchenkova, T.1    Ganal, M.W.2
  • 5
    • 9344238754 scopus 로고    scopus 로고
    • New microsatellite markers developed from reported Ipomoea trifida sequences and their application to sweet potato and its related wild species
    • Hu J Nakatani M Lalusin AG Fujimura T New microsatellite markers developed from reported Ipomoea trifida sequences and their application to sweet potato and its related wild species Sci Hortic 2004, 102: 375-386 10.1016/j.scienta.2004.04.014
    • (2004) Sci Hortic , vol.102 , pp. 375-386
    • Hu, J.1    Nakatani, M.2    Lalusin, A.G.3    Fujimura, T.4
  • 6
    • 11144273819 scopus 로고    scopus 로고
    • Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats
    • 10.1139/g04-055
    • Pinto LR Oliveira KM Ulian EC Garcia AAF de Souza AP Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats Genome 2004, 47: 795-804 10.1139/g04-055 15499394
    • (2004) Genome , vol.47 , pp. 795-804
    • Pinto, L.R.1    Oliveira, K.M.2    Ulian, E.C.3    Garcia, A.A.F.4    de Souza, A.P.5
  • 8
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • 10.1038/nrg1348
    • Ellegren H Microsatellites: Simple sequences with complex evolution Nat Rev Genet 2004, 5: 435-445 10.1038/nrg1348 15153996
    • (2004) Nat Rev Genet , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 9
    • 33749991391 scopus 로고    scopus 로고
    • The rise, fall and renaissance of microsatellites in eukaryotic genomes
    • 10.1002/bies.20470
    • Buschiazzo E Gemmell NJ The rise, fall and renaissance of microsatellites in eukaryotic genomes BioEssays 2006, 28: 1040-1050 10.1002/bies.20470 16998838
    • (2006) BioEssays , vol.28 , pp. 1040-1050
    • Buschiazzo, E.1    Gemmell, N.J.2
  • 10
    • 0029120677 scopus 로고
    • New HLA-DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm
    • 10.1038/ng0895-407
    • Zangenberg G Huang M-M Arnheim N Erlich H New HLA-DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm Nature Genetics 1995, 10: 407-414 10.1038/ng0895-407 7670490
    • (1995) Nature Genetics , vol.10 , pp. 407-414
    • Zangenberg, G.1    Huang, M.-M.2    Arnheim, N.3    Erlich, H.4
  • 11
    • 0034010124 scopus 로고    scopus 로고
    • Tetrad analysis shows that gene conversion is the major mechanism involved in mutation at the human minisatellite MS1 integrated in Saccharomyces cerevisiae
    • 10.1159/000051849
    • Berg I Cederberg H Rannug U Tetrad analysis shows that gene conversion is the major mechanism involved in mutation at the human minisatellite MS1 integrated in Saccharomyces cerevisiae Genet Res 2000, 75: 1-12 10.1159/000051849 10740916
    • (2000) Genet Res , vol.75 , pp. 1-12
    • Berg, I.1    Cederberg, H.2    Rannug, U.3
  • 12
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • 311097
    • Temnykh S DeClerck G Lukashova A Lipovich L Cartinhour S McCouch S Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential Genome Res 2001, 11: 1441-1452 311097 11483586 10.1101/gr.184001
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 14
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T Michalek W Varshney RK Graner A Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) Theor Appl Genet 2003, 106: 411-422 12589540
    • (2003) Theor Appl Genet , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 15
    • 2942553229 scopus 로고    scopus 로고
    • Simple sequence repeat marker loci discovery using SSR primer
    • 10.1093/bioinformatics/bth104
    • Robinson AJ Love CG Batley J Barker G Edwards D Simple sequence repeat marker loci discovery using SSR primer Bioinformatics 2004, 20: 1475-1476 10.1093/bioinformatics/bth104 14962913
    • (2004) Bioinformatics , vol.20 , pp. 1475-1476
    • Robinson, A.J.1    Love, C.G.2    Batley, J.3    Barker, G.4    Edwards, D.5
  • 16
    • 0033555906 scopus 로고    scopus 로고
    • Tandem Repeats Finder: A program to analyze DNA sequences
    • 148217
    • Benson G Tandem Repeats Finder: A program to analyze DNA sequences Nucl Acids Res 1999, 27: 573-580 148217 9862982 10.1093/nar/27.2.573
    • (1999) Nucl Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 17
    • 0033782605 scopus 로고    scopus 로고
    • Computational and experimental characterization of physically clustered simple sequence repeats in plants
    • 1461288
    • Cardle L Ramsay L Milbourne D Macaulay M Marshall D Waugh R Computational and experimental characterization of physically clustered simple sequence repeats in plants Genetics 2000, 156: 847-854 1461288 11014830
    • (2000) Genetics , vol.156 , pp. 847-854
    • Cardle, L.1    Ramsay, L.2    Milbourne, D.3    Macaulay, M.4    Marshall, D.5    Waugh, R.6
  • 18
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • 10.1038/ng822
    • Morgante M Hanafey M Powell W Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes Nat Genet 2002, 30: 194-200 10.1038/ng822 11799393
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 19
    • 33747305742 scopus 로고    scopus 로고
    • Silene tatarica microsatellites are frequently located in repetitive DNA
    • 10.1111/j.1420-9101.2006.01118.x
    • Tero N Neumeier H Gudavalli R Schlotterer C Silene tatarica microsatellites are frequently located in repetitive DNA J Evol Biol 2006, 19: 1612-1619 10.1111/j.1420-9101.2006.01118.x 16910990
    • (2006) J Evol Biol , vol.19 , pp. 1612-1619
    • Tero, N.1    Neumeier, H.2    Gudavalli, R.3    Schlotterer, C.4
  • 22
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Humana Press, Totowa, New Jersey Krawetz S, Misener S
    • Rozen S Skaletsky H Primer3 on the WWW for general users and for biologist programmers Bioinformatics Methods and Protocols: Methods in Molecular Biology Humana Press, Totowa, New Jersey Krawetz S, Misener S 2000, 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 24
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Gentleman R Ihaka R R: A language for data analysis and graphics J Comput Graph Stat 1996, 5: 299-314 10.2307/1390807
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Gentleman, R.1    Ihaka, R.2
  • 25
    • 34547730624 scopus 로고    scopus 로고
    • Phylip (Phylogeny Inference Package), version 3.65
    • Phylip (Phylogeny Inference Package), version 3.65 http://evolution.genetics.washington.edu/
  • 26
    • 34547770204 scopus 로고    scopus 로고
    • Gymnosperm DNA C-values database
    • Gymnosperm DNA C-values database http://www.rbgkew.org.uk/cval/ homepage.html
  • 27
    • 34547750299 scopus 로고    scopus 로고
    • Pteridophyte DNA C-values database
    • Pteridophyte DNA C-values database http://www.rbgkew.org.uk/cval/ homepage.html
  • 28
    • 34547769688 scopus 로고    scopus 로고
    • Angiosperm DNA C-values database
    • Angiosperm DNA C-values database http://www.rbgkew.org.uk/cval/ homepage.html
  • 30
    • 33748100051 scopus 로고    scopus 로고
    • Long repeats in a huge genome: Microsatellite loci in the grasshopper Chorthippus biguttulus
    • 10.1007/s00239-005-0022-6
    • Ustinova J Achmann R Cremer S Mayer F Long repeats in a huge genome: microsatellite loci in the grasshopper Chorthippus biguttulus J Mol Evol 2006, 62: 158-167 10.1007/s00239-005-0022-6 16474983
    • (2006) J Mol Evol , vol.62 , pp. 158-167
    • Ustinova, J.1    Achmann, R.2    Cremer, S.3    Mayer, F.4
  • 31
    • 4644359310 scopus 로고    scopus 로고
    • A comparison of the nature and abundance of microsatellites in 14 fungal genomes
    • 10.1016/j.fgb.2004.08.004
    • Lim S Notley-McRobb L Lim M Carter DA A comparison of the nature and abundance of microsatellites in 14 fungal genomes Fungal Genet Biol 2004, 41: 1025-1036 10.1016/j.fgb.2004.08.004 15465391
    • (2004) Fungal Genet Biol , vol.41 , pp. 1025-1036
    • Lim, S.1    Notley-McRobb, L.2    Lim, M.3    Carter, D.A.4
  • 32
    • 0034767567 scopus 로고    scopus 로고
    • Microsatellite evolution in vertebrates: Inference from AC dinucleotide repeats
    • 11681728
    • Neff BD Gross MR Microsatellite evolution in vertebrates: Inference from AC dinucleotide repeats Evolution 2001, 55: 1717-1733 11681728
    • (2001) Evolution , vol.55 , pp. 1717-1733
    • Neff, B.D.1    Gross, M.R.2
  • 33
    • 30544440501 scopus 로고    scopus 로고
    • Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton
    • 10.1007/s00122-005-0142-9
    • Han Z Wang C Song X Guo W Gou J Li C Chen X Zhang T Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton Theor Appl Genet 2006, 112: 430-439 10.1007/ s00122-005-0142-9 16341684
    • (2006) Theor Appl Genet , vol.112 , pp. 430-439
    • Han, Z.1    Wang, C.2    Song, X.3    Guo, W.4    Gou, J.5    Li, C.6    Chen, X.7    Zhang, T.8
  • 34
    • 33745056327 scopus 로고    scopus 로고
    • Tandem repeat copy-number variation in protein-coding regions of human genes
    • 1273636
    • O'Dushlaine CT Edwards RJ Park SD Shields DC Tandem repeat copy-number variation in protein-coding regions of human genes Genome Biol 2005, 6: R69 1273636 16086851 10.1186/gb-2005-6-8-r69
    • (2005) Genome Biol , vol.6
    • O'Dushlaine, C.T.1    Edwards, R.J.2    Park, S.D.3    Shields, D.C.4
  • 35
    • 0042819915 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins evolve by repeat expansion
    • 10.1002/bies.10324
    • Tompa P Intrinsically unstructured proteins evolve by repeat expansion BioEssays 2003, 25: 847-855 10.1002/bies.10324 12938174
    • (2003) BioEssays , vol.25 , pp. 847-855
    • Tompa, P.1
  • 36
    • 33645099290 scopus 로고    scopus 로고
    • Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans
    • 10.1093/bioinformatics/bti795
    • Shao XA Shepelev V Fedorov A Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans Bioinformatics 2006, 22: 692-698 10.1093/bioinformatics/bti795 16308355
    • (2006) Bioinformatics , vol.22 , pp. 692-698
    • Shao, X.A.1    Shepelev, V.2    Fedorov, A.3
  • 37
    • 27144558000 scopus 로고    scopus 로고
    • A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species
    • 1258171
    • Dixon RJ Eperon IC Hall L Samani NJ A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species Nucl Acids Res 2005, 33: 5904-5913 1258171 16237125 10.1093/nar/gki893
    • (2005) Nucl Acids Res , vol.33 , pp. 5904-5913
    • Dixon, R.J.1    Eperon, I.C.2    Hall, L.3    Samani, N.J.4
  • 38
    • 1842737283 scopus 로고    scopus 로고
    • Role of transposable elements in the propagation of minisatellites in the rice genome
    • 10.1007/s00438-003-0973-5
    • Inukai T Role of transposable elements in the propagation of minisatellites in the rice genome Mol Gen Genomics 2004, 271: 220-227 10.1007/s00438-003-0973-5
    • (2004) Mol Gen Genomics , vol.271 , pp. 220-227
    • Inukai, T.1
  • 39
    • 12344335157 scopus 로고    scopus 로고
    • A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences
    • 10.1093/bioinformatics/bth410
    • Bilgen M Karaca M Onus AN Ince AG A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences Bioinformatics 2004, 20: 3379-3386 10.1093/bioinformatics/ bth410 15256410
    • (2004) Bioinformatics , vol.20 , pp. 3379-3386
    • Bilgen, M.1    Karaca, M.2    Onus, A.N.3    Ince, A.G.4
  • 40
    • 0035853756 scopus 로고    scopus 로고
    • Novel frameshift mutations near short simple repeats
    • 10.1074/jbc.M011040200
    • van den Hurk WH Willems HJJ Bloeman M Martens GJM Novel frameshift mutations near short simple repeats J Biol Chem 2001, 276: 11496-11498 10.1074/jbc.M011040200 11139590
    • (2001) J Biol Chem , vol.276 , pp. 11496-11498
    • van den Hurk, W.H.1    Willems, H.J.J.2    Bloeman, M.3    Martens, G.J.M.4
  • 41
    • 34547743729 scopus 로고    scopus 로고
    • GenBank
    • GenBank http://bio-mirror.net/biomirror/genbank
  • 43
    • 34547774056 scopus 로고    scopus 로고
    • UniVec
    • UniVec ftp://ftp.ncbi.nih.gov/pub/UniVec/
  • 44
    • 0031599142 scopus 로고    scopus 로고
    • Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator
    • 10.1145/272991.272995
    • Matsumoto M Nishimura T Mersenne Twister: A 623-dimensionally equidistributed uniform pseudo-random number generator ACM Trans Model Comput Simul 1998, 8: 3-30 10.1145/272991.272995
    • (1998) ACM Trans Model Comput Simul , vol.8 , pp. 3-30
    • Matsumoto, M.1    Nishimura, T.2
  • 46
    • 4043111253 scopus 로고    scopus 로고
    • Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs
    • 10.1007/s00122-004-1635-7
    • Liewlaksaneeyanawin C Ritland CE El-Kassaby YA Ritland K Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs Theor Appl Genet 2004, 109: 361-369 10.1007/s00122-004-1635-7 15045175
    • (2004) Theor Appl Genet , vol.109 , pp. 361-369
    • Liewlaksaneeyanawin, C.1    Ritland, C.E.2    El-Kassaby, Y.A.3    Ritland, K.4
  • 47
    • 33645581889 scopus 로고    scopus 로고
    • Mining and characterizing microsatellites from Citrus ESTs
    • 10.1007/s00122-006-0226-1
    • Chen C Zhou P Choi YA Huang S Gmitter FG Mining and characterizing microsatellites from Citrus ESTs Theor Appl Genet 2006, 112: 1248-1257 10.1007/s00122-006-0226-1 16474971
    • (2006) Theor Appl Genet , vol.112 , pp. 1248-1257
    • Chen, C.1    Zhou, P.2    Choi, Y.A.3    Huang, S.4    Gmitter, F.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.