Statistical modeling of candidate gene effects on milk production traits in dairy cattle

Journal of Dairy Science

Volumn 90, Issue 6, 2007, Pages 2971-2979

  Szyda, J ^a   Komisarek, J ^b  

^a WROC AW UNIVERSITY OF ENVIRONMENTAL AND LIFE SCIENCES   (Poland)

^b POZNA UNIVERSITY OF LIFE SCIENCES   (Poland)

Author keywords

Candidate gene; Dairy cattle; Model selection; Single nucleotide polymorphism

Indexed keywords

BOS;

BUTYROPHILIN; CELL SURFACE RECEPTOR; DIACYLGLYCEROL ACYLTRANSFERASE; LEPTIN; LEPTIN RECEPTOR; MEMBRANE PROTEIN; UNCLASSIFIED DRUG;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; BREEDING; CATTLE; FEMALE; GENETICS; GENOTYPE; LACTATION; MALE; MILK; PHYSIOLOGY; QUANTITATIVE TRAIT LOCUS; SECRETION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL;

ANIMALS; BAYES THEOREM; BREEDING; CATTLE; DIACYLGLYCEROL O-ACYLTRANSFERASE; FEMALE; GENOTYPE; LACTATION; LEPTIN; MALE; MEMBRANE GLYCOPROTEINS; MILK; MODELS, BIOLOGICAL; MODELS, STATISTICAL; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; RECEPTORS, CELL SURFACE;

EID: 34547682283     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2006-724     Document Type: Article

References (32)

1. Baierl, A., M. Bogdan, F. Frommlet, and A. Futschik. 2006. On locating multiple interacting quantitative trait loci in intercross designs. Genetics 173:1693-1703.
2. Bennewitz, J., N. Reinsch, S. Paul, C. Looft, B. Kaupe, C. Weimann, G. Erhardt, G. Thaller, C. Kühn, M. Schwerin, H. Thomsen, F. Reinhardt, R. Reents, and E. Kalm. 2004. The DGAT1 K232A mutation is not solely responsible for the milk production quantitative trait locus on the bovine chromosome 14. J. Dairy Sci. 87:431-442.
3. Bogdan, M., J. K. Gosh, and R. Doerge. 2004. Modifying the Schwarz Bayesian information criterion to locate multiple interacting quantitative trait loci. Genetics 167:989-999.
4. Buchanan, F. C., A. G. van Kessel, C. Waldner, D. A. Christensen, B. Laarveld, and S. M. Schmutz. 2003. An association between a leptin single nucleotide polymorphism and milk and protein yield. J. Dairy Sci. 86:3164-3166.
5. Coppieters, W., J. Riquet, J.-J. Arranz, P. Berzi, N. Cambisano, B. Grisart, L. Karim, F. Marcq, L. Moreau, C. Nezer, P. Simon, P. Vanmanshoven, D. Wagenaar, and M. Georges. 1998. A QTL with major effect on milk yield and composition maps to bovine chromosome 14. Mamm. Genome 9:540-544.
6. Feuermann, Y., S. J. Mabjeesh, and A. Shamay. 2004. Leptin affects prolactin action on milk protein and fat synthesis in the bovine mammary gland. J. Dairy Sci. 87:2941-2946.
7. Fruhbeck, G. 2001. A heliocentric view of leptin. Proc. Nutr. Soc. 60:301-318.
8. Grisart, B., W. Coppieters, F. Farnir, L. Karim, C. Ford, P. Berzi, N. Cambisano, M. Mni, S. Reid, P. Simon, R. Spelman, M. Georges, and R. Snell. 2002. Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12:222-231.
9. Grisart, B., F. Farnir, L. Karim, N. Cambisano, J.-J. Kim, A. Kvasz, M. Mni, P. Simon, J.-M. Frère, W. Coppieters, and M. Georges. 2004. Genetic and functional confirmation of the causality of the DGATl K232A quantitative trait nucleotide in affecting milk yield and composition. Proc. Natl. Acad. Sci. USA 101:2398-2403.
10. Houseknecht, K. L., C. A. Baile, R. L. Matteri, and M. E. Spurlock. 1998. The biology of leptin: A review. J. Anim. Sci. 76:1405-1420.
11. Husaini, Y., R. J. Wilkins, and H. W. Davey. 1999. Identification of five point mutations, including an AluI RFLP, in the bovine butyrophilin gene. Anim. Genet. 30:400-401.
12. Kao, C. H., and Z.-B. Zeng. 2002. Modeling epistasis of quantitative trait loci using Cockerham's model. Genetics 160:1243-1261.
13. Komisarek, J., J. Szyda, A. Michalak, and Z. Dorynek. 2005. Impact of leptin gene polymorphisms on breeding value for milk production traits in cattle. J. Anim. Feed Sci. 14:491-500.
14. Konfortov, B. A., V. E. Licence, and J. R. Miller. 1999. Re-sequencing of DNA from a diverse panel of cattle reveals a high level of polymorphism in both intron and exon. Mamm. Genome 10:1142-1145.
15. Lagonigro, R., P. Wiener, F. Pilla, J. A. Woolliams, and J. L. Williams. 2003. A new mutation in the coding region of the bovine leptin gene associated with feed intake. Anim. Genet. 34:371-374.
16. Liefers, S. C., R. F. Veerkamp, M. F. W. te Pas, C. Delavaud, Y. Chilliard, M. Platje, and T. van der Lende. 2005. Leptin promoter mutation affects leptin levels and performance traits in dairy cows. Anim. Genet. 36:111-118.
17. Liefers, S. C., R. F. Veerkamp, M. F. te Pas, C. Delavaud, Y. Chilliard, and T. van der Lende. 2004. A missense mutation in the bovine leptin receptor gene is associated with leptin concentrations during late pregnancy. Anim. Genet. 35:138-141.
18. Liu, Z., F. Reinhardt, A. Bunger, and R. Reents. 2004. Derivation and calculation of approximate reliabilities and daughter yield-deviations of a random regression test-day model for genetic evaluation of dairy cattle. J. Dairy Sci. 87:1896-1907.
19. Mather, I. H. 2000. A review and proposed nomenclature for major proteins of the milk-fat globule membrane. J. Dairy Sci. 83:203-247.
20. Ogg, S. L., A. K. Weldon, L. Dobbie, A. J. H. Smith, and I. H. Mather. 2004. Expression of butyrophilin (BTN1A1) in lactating mammary gland is essential for the regulated secretion of milk-lipid droplets. Proc. Natl. Acad. Sci. USA 101:10084-10089.
21. Riquet, J., W. Coppieters, N. Cambisano, J.-J. Arranz, P. Berzi, S. Davis, B. Grisart, F. Farnir, L. Karim, M. Mni, P. Simon, J. F. Taylor, P. Vanmanshoven, D. Wagenaar, J. E. Womack, and M. Georges. 1999. Identity-by-decent fine-mapping of QTL in outbred populations: Application to milk production in dairy cattle. Proc. Natl. Acad. Sci. USA 96:9252-9257.
22. Sanders, K., J. Bennewitz, N. Reinsch, G. Thaller, E.-M. Prinzenberg, C. Kühn, and E. Kalm. 2006. Characterization of the DGAT1 mutations and the CSN1S1 promoter in the German Angeln dairy cattle population. J. Dairy Sci. 89:3164-3174.
23. Schaeffer, L. R. 2006. Strategy for applying genome-wide selection in dairy cattle. J. Anim. Breed. Genet. 123:218-223.
24. Schwarz, G. 1978. Estimating the dimension of a model. Ann. Stat. 6:461-464.
25. Seyfert, H.-M., and F. Lüthen. 1998. The structure of the bovine butyrophilin encoding gene differs grossly from mouse concerning promoter localization and exon organization of the S-untranslated region. Proc. 6th World Congr. Genet. Appl. Livest. Prod. 25:51-54.
26. Silva, L. F. P., M. J. Vandehaar, M. S. Weber Nielsen, and G. W. Smith. 2002. Evidence for a local effect of leptin in bovine mammary gland. J. Dairy Sci. 85:3277-3286.
27. Smith, S. J., S. Cases, D. R. Jensen, H. C. Chen, E. Sande, B. Tow, D. A. Sanan, J. Raber, R. H. Eckel, and R. V. Farese Jr. 2000. Obesity resistance and multiple mechanisms of triglyceride synthesis in mice lacking Dgat. Nat. Genet. 25:87-90.
28. Spelman, R. J., C. A. Ford, P. Mcelhinney, G. C. Gregory, and R. G. Snell. 2002. Characterization of the DGAT1 gene in the New Zealand dairy population. J. Dairy Sci. 85:3514-3517.
29. Taylor, C., M. Everest, and C. Smith. 1996. Restriction fragment length polymorphism in amplification products of the bovine butyrophilin gene: Assignment of bovine butyrophilin to bovine chromosome 23. Anim. Genet. 27:183-185.
30. Thaller, G., W. Krämer, A. Winter, B. Kaupe, G. Erhardt, and R. Fries. 2003. Effects of DGAT1 variants on milk production traits in German cattle breeds. J. Anim. Sci. 81:1911-1918.
31. Winter, A., W. Krämer, F. A. O. Werner, S. Kollers, S. Kata, G. Durstewitz, J. Buitkamp, J. E. Womack, G. Thaller, and R. Fries. 2002. Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol aeyltransferase (DGAT1) with Variation at a quantitative trait locus for milk fat content. Proc. Natl. Acad. Sci. USA 99:9300-9305.
32. Zeng, Z.-B., T. Wang, and W. Zou. 2005. Modeling quantitative trait loci and interpretation of models. Genetics 169:1711-1725.