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Volumn 368, Issue 2, 2007, Pages 250-257

Toward a fluorescent single-strand conformation polymorphism technique that detects all mutations: F-DOVAM-S

Author keywords

Clinical diagnosis; F DOVAM S; Fluorescence; Multiplexing; Mutation detection; SSCP; Lactamase

Indexed keywords

CHROMATOGRAPHIC ANALYSIS; DIAGNOSIS; ELECTROPHORESIS; MULTIPLEXING; POLYMORPHISM;

EID: 34547599133     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2007.05.024     Document Type: Article
Times cited : (3)

References (27)
  • 1
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita M., Iwahana H., Kanazawa H., Hayashi K., and Sekiya T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86 (1989) 2766-2770
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 2
    • 0033049593 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection
    • Nataraj A.J., Olivos-Glander I., Kusukawa N., and Highsmith Jr. W.E. Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis 20 (1999) 1177-1185
    • (1999) Electrophoresis , vol.20 , pp. 1177-1185
    • Nataraj, A.J.1    Olivos-Glander, I.2    Kusukawa, N.3    Highsmith Jr., W.E.4
  • 3
    • 44049116183 scopus 로고
    • PCR-SSCP: A method for detection of mutations
    • Hayashi K. PCR-SSCP: A method for detection of mutations. Genet. Anal. Tech. Appl. 9 (1992) 73-79
    • (1992) Genet. Anal. Tech. Appl. , vol.9 , pp. 73-79
    • Hayashi, K.1
  • 4
    • 33750238067 scopus 로고    scopus 로고
    • The potential of electrophoretic mobility shift assays for clinical mutation detection
    • Hestekin C.N., and Barron A.E. The potential of electrophoretic mobility shift assays for clinical mutation detection. Electrophoresis 27 (2006) 3805-3815
    • (2006) Electrophoresis , vol.27 , pp. 3805-3815
    • Hestekin, C.N.1    Barron, A.E.2
  • 5
    • 34247127700 scopus 로고    scopus 로고
    • Fast establishment of single-strand conformation polymorphism by targeted primer development in Pityogenes chalcographus (Coleoptera, Scolytinae)
    • Arthofer W., Avtzis D.N., and Stauffer C. Fast establishment of single-strand conformation polymorphism by targeted primer development in Pityogenes chalcographus (Coleoptera, Scolytinae). Electrophoresis 28 (2007) 1046-1052
    • (2007) Electrophoresis , vol.28 , pp. 1046-1052
    • Arthofer, W.1    Avtzis, D.N.2    Stauffer, C.3
  • 6
    • 34547843568 scopus 로고    scopus 로고
    • A. Chatzikyriakidou, I. Georgiou, P.V. Voulgari, C.G. Papadopoulos, T. Tzavaras, A.A. Drosos, Transcription regulatory polymorphism -43T>C in the 5′-flanking region of SLC19A1 gene could affect rheumatoid arthritis patient response to methotrexate therapy, Rheumatol. Intl. (2007) in press, doi:10.1007/s00296-007-0339-0.
  • 7
    • 33847062474 scopus 로고    scopus 로고
    • 22(B4)Glu-->Ala (GAA-->GCA)] in Thailand by the polymerase chain reaction-single-strand conformation polymorphism technique and by amplification refractory mutation system-polymerase chain reaction
    • 22(B4)Glu-->Ala (GAA-->GCA)] in Thailand by the polymerase chain reaction-single-strand conformation polymorphism technique and by amplification refractory mutation system-polymerase chain reaction. Hemoglobin 31 (2007) 93-99
    • (2007) Hemoglobin , vol.31 , pp. 93-99
    • Chinchang, W.1    Viprakasit, V.2
  • 8
    • 33847351732 scopus 로고    scopus 로고
    • Association of the Asn306Ser variant of the SP4 transcription factor and an intronic variant in the β-subunit of transducin with digenic disease
    • Gao Y.Q., Danciger M., Ozgul R.K., Gribanova Y., Jacobson S., and Farber D.B. Association of the Asn306Ser variant of the SP4 transcription factor and an intronic variant in the β-subunit of transducin with digenic disease. Mol. Vis. 13 (2007) 287-292
    • (2007) Mol. Vis. , vol.13 , pp. 287-292
    • Gao, Y.Q.1    Danciger, M.2    Ozgul, R.K.3    Gribanova, Y.4    Jacobson, S.5    Farber, D.B.6
  • 11
    • 34247277178 scopus 로고    scopus 로고
    • Epigenetic and genetic alterations of PTEN in hepatocellular carcinoma
    • Wang L., Wang W.L., Zhang Y., Guo S.P., Zhang J., and Li Q.L. Epigenetic and genetic alterations of PTEN in hepatocellular carcinoma. Hepatol. Res. 37 (2007) 389-396
    • (2007) Hepatol. Res. , vol.37 , pp. 389-396
    • Wang, L.1    Wang, W.L.2    Zhang, Y.3    Guo, S.P.4    Zhang, J.5    Li, Q.L.6
  • 12
    • 0031820586 scopus 로고    scopus 로고
    • The SSCP phenomenon: Addition of Hepes buffer dramatically affects electrophoretic mobility
    • Liu Q., and Sommer S.S. The SSCP phenomenon: Addition of Hepes buffer dramatically affects electrophoretic mobility. BioTechniques 25 (1998) 50-56
    • (1998) BioTechniques , vol.25 , pp. 50-56
    • Liu, Q.1    Sommer, S.S.2
  • 13
    • 28244451936 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism (SSCP) of oligodeoxyribonucleotides: An insight into solution structural dynamics of DNAs provided by gel electrophoresis and molecular dynamics simulations
    • Biyani M., and Nishigaki K. Single-strand conformation polymorphism (SSCP) of oligodeoxyribonucleotides: An insight into solution structural dynamics of DNAs provided by gel electrophoresis and molecular dynamics simulations. J. Biochem. (Tokyo) 138 (2005) 363-373
    • (2005) J. Biochem. (Tokyo) , vol.138 , pp. 363-373
    • Biyani, M.1    Nishigaki, K.2
  • 14
    • 0027434131 scopus 로고
    • How sensitive is PCR-SSCP?
    • Hayashi K., and Yandell D.W. How sensitive is PCR-SSCP?. Hum. Mutat. 2 (1993) 338-346
    • (1993) Hum. Mutat. , vol.2 , pp. 338-346
    • Hayashi, K.1    Yandell, D.W.2
  • 15
    • 0030871199 scopus 로고    scopus 로고
    • SSCP analysis of long DNA fragments in low pH gel
    • Kukita Y., Tahira T., Sommer S.S., and Hayashi K. SSCP analysis of long DNA fragments in low pH gel. Hum. Mutat. 10 (1997) 400-407
    • (1997) Hum. Mutat. , vol.10 , pp. 400-407
    • Kukita, Y.1    Tahira, T.2    Sommer, S.S.3    Hayashi, K.4
  • 16
    • 0028800690 scopus 로고
    • Restriction endonuclease fingerprinting (REF): A sensitive method for screening mutations in long, contiguous segments of DNA
    • Liu Q., and Sommer S.S. Restriction endonuclease fingerprinting (REF): A sensitive method for screening mutations in long, contiguous segments of DNA. BioTechniques 18 (1995) 470-477
    • (1995) BioTechniques , vol.18 , pp. 470-477
    • Liu, Q.1    Sommer, S.S.2
  • 17
    • 0030043074 scopus 로고    scopus 로고
    • Bi-directional dideoxy fingerprinting (Bi-ddF): A rapid method for quantitative detection of mutations in genomic regions of 300-600 bp
    • Liu Q., Feng J., and Sommer S.S. Bi-directional dideoxy fingerprinting (Bi-ddF): A rapid method for quantitative detection of mutations in genomic regions of 300-600 bp. Hum. Mol. Genet. 5 (1996) 107-114
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 107-114
    • Liu, Q.1    Feng, J.2    Sommer, S.S.3
  • 19
    • 34547561837 scopus 로고    scopus 로고
    • J. Feng, J. Yan, W. Li, J. Chen, S. Sommer, Candidate gene analyses by scanning or brute force fluorescent sequencing: A comparison of DOVAM-S with gel-based and capillary-based sequencing, Genet. Test. (in press).
  • 20
    • 0034796632 scopus 로고    scopus 로고
    • Multitemperature single-strand conformation polymorphism
    • Kaczanowski R., Trzeciak L., and Kucharczyk K. Multitemperature single-strand conformation polymorphism. Electrophoresis 22 (2001) 3539-3545
    • (2001) Electrophoresis , vol.22 , pp. 3539-3545
    • Kaczanowski, R.1    Trzeciak, L.2    Kucharczyk, K.3
  • 21
    • 0028914431 scopus 로고
    • Point mutation screening for 16 exons of the dystrophin gene by multiplex single-strand conformation polymorphism analysis
    • Kneppers A.L., Deutz-Terlouw P.P., Den Dunnen J.T., van Ommen G.J., and Bakker E. Point mutation screening for 16 exons of the dystrophin gene by multiplex single-strand conformation polymorphism analysis. Hum. Mutat. 5 (1995) 235-242
    • (1995) Hum. Mutat. , vol.5 , pp. 235-242
    • Kneppers, A.L.1    Deutz-Terlouw, P.P.2    Den Dunnen, J.T.3    van Ommen, G.J.4    Bakker, E.5
  • 22
    • 33646769244 scopus 로고    scopus 로고
    • High-efficiency multiplex capillary electrophoresis single strand conformation polymorphism (multi-CE-SSCP) mutation screening of SCN5A: A rapid genetic approach to cardiac arrhythmia
    • Hofman-Bang J., Behr E.R., Hedley P., Tfelt-Hansen J., Kanters J.K., Haunsoe S., McKenna W.J., and Christiansen M. High-efficiency multiplex capillary electrophoresis single strand conformation polymorphism (multi-CE-SSCP) mutation screening of SCN5A: A rapid genetic approach to cardiac arrhythmia. Clin. Genet. 69 (2006) 504-511
    • (2006) Clin. Genet. , vol.69 , pp. 504-511
    • Hofman-Bang, J.1    Behr, E.R.2    Hedley, P.3    Tfelt-Hansen, J.4    Kanters, J.K.5    Haunsoe, S.6    McKenna, W.J.7    Christiansen, M.8
  • 23
    • 0035863677 scopus 로고    scopus 로고
    • Efficient detection of Alport syndrome COL4A5 mutations with multiplex genomic PCR-SSCP
    • Barker D.F., Denison J.C., Atkin C.L., and Gregory M.C. Efficient detection of Alport syndrome COL4A5 mutations with multiplex genomic PCR-SSCP. Am. J. Med. Genet. 98 (2001) 148-160
    • (2001) Am. J. Med. Genet. , vol.98 , pp. 148-160
    • Barker, D.F.1    Denison, J.C.2    Atkin, C.L.3    Gregory, M.C.4
  • 24
    • 0022257323 scopus 로고
    • Nucleotide sequence of the gene for human factor IX (anti-hemophilic factor B)
    • Yoshitake S., Schach B.G., Foster D.C., Davie E.W., and Kurachi K. Nucleotide sequence of the gene for human factor IX (anti-hemophilic factor B). Biochemistry 24 (1985) 3736-3750
    • (1985) Biochemistry , vol.24 , pp. 3736-3750
    • Yoshitake, S.1    Schach, B.G.2    Foster, D.C.3    Davie, E.W.4    Kurachi, K.5
  • 27
    • 33846871449 scopus 로고    scopus 로고
    • Next-generation sequencing outpaces expectations
    • Shaffer C. Next-generation sequencing outpaces expectations. Nat. Biotechnol. 25 (2007) 149
    • (2007) Nat. Biotechnol. , vol.25 , pp. 149
    • Shaffer, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.