-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0030779914
-
Application of microautoradiography to the study of substrate uptake by filamentous microorganisms in activated sludge
-
Andreasen K., and Nielsen P.H. Application of microautoradiography to the study of substrate uptake by filamentous microorganisms in activated sludge. Appl. Environ. Microbiol. 63 (1997) 3662-3668
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3662-3668
-
-
Andreasen, K.1
Nielsen, P.H.2
-
3
-
-
0028128491
-
Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes
-
Burggraf S., Mayer T., Amann R., Schadhauser S., Woese C.R., and Stetter K.O. Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 60 (1994) 3112-3119
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3112-3119
-
-
Burggraf, S.1
Mayer, T.2
Amann, R.3
Schadhauser, S.4
Woese, C.R.5
Stetter, K.O.6
-
4
-
-
0031882598
-
Terminal restriction fragment patterns (TRFPs), a rapid, PCR based method for the comparison of complex bacterial communities
-
Clement B.G., Kehl L.E., DeBord K.L., and Kitts C.L. Terminal restriction fragment patterns (TRFPs), a rapid, PCR based method for the comparison of complex bacterial communities. J. Microbiol. Meth. 31 (1998) 135-142
-
(1998)
J. Microbiol. Meth.
, vol.31
, pp. 135-142
-
-
Clement, B.G.1
Kehl, L.E.2
DeBord, K.L.3
Kitts, C.L.4
-
5
-
-
0037251969
-
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole R., Chai B., Marsh T.L., Farris R.J., Wang Q., Kulam S.A., Chandra S., McGarrell D.M., Schmidt T.M., Garrity G.M., and Tiedje J.M. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 1 (2003) 442-443
-
(2003)
Nucleic Acids Res.
, vol.1
, pp. 442-443
-
-
Cole, R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
6
-
-
18144365162
-
Anaerobic biological treatment of phenolic wastewater at 15-18 °C
-
Collins G., Foy C., McHugh S., Mahony T., and O'Flaherty V. Anaerobic biological treatment of phenolic wastewater at 15-18 °C. Water Res. 39 (2005) 1614-1620
-
(2005)
Water Res.
, vol.39
, pp. 1614-1620
-
-
Collins, G.1
Foy, C.2
McHugh, S.3
Mahony, T.4
O'Flaherty, V.5
-
7
-
-
18144428164
-
Anaerobic treatment of 2,4,6-trichlorophenol in an expanded granular sludge bed-anaerobic filter (EGSB-AF) bioreactor at 15 °C
-
Collins G., Foy C., McHugh S., Mahony T., and O'Flaherty V. Anaerobic treatment of 2,4,6-trichlorophenol in an expanded granular sludge bed-anaerobic filter (EGSB-AF) bioreactor at 15 °C. FEMS Microbiol. Ecol. 53 (2005) 167-178
-
(2005)
FEMS Microbiol. Ecol.
, vol.53
, pp. 167-178
-
-
Collins, G.1
Foy, C.2
McHugh, S.3
Mahony, T.4
O'Flaherty, V.5
-
8
-
-
33646874401
-
Assessing the black box of microbial diversity and ecophysiology: recent advances through polyphasic experiments
-
Collins G., Kavanagh S., McHugh S., Connaughton S., Kearney A., Rice O., Carrigg C., Scully C., Bhreathnach N., Mahony T., Madden P., and Enright V. O'Flaherty A.M. Assessing the black box of microbial diversity and ecophysiology: recent advances through polyphasic experiments. J. Environ. Health Sci. 41 (2006) 881-895
-
(2006)
J. Environ. Health Sci.
, vol.41
, pp. 881-895
-
-
Collins, G.1
Kavanagh, S.2
McHugh, S.3
Connaughton, S.4
Kearney, A.5
Rice, O.6
Carrigg, C.7
Scully, C.8
Bhreathnach, N.9
Mahony, T.10
Madden, P.11
Enright V. O'Flaherty, A.M.12
-
9
-
-
27744489214
-
Distribution, dynamics and in situ ecophysiology of Crenarchaeota in anaerobic wastewater treatment granular biofilms
-
Collins G., Mahony T., McHugh S., Gieseke A., de Beer D., and O'Flaherty V. Distribution, dynamics and in situ ecophysiology of Crenarchaeota in anaerobic wastewater treatment granular biofilms. Water Sci. Technol. 52 (2005) 233-239
-
(2005)
Water Sci. Technol.
, vol.52
, pp. 233-239
-
-
Collins, G.1
Mahony, T.2
McHugh, S.3
Gieseke, A.4
de Beer, D.5
O'Flaherty, V.6
-
10
-
-
33644961555
-
Stability reproducibility and response to perturbations of high-rate psychrophilic anaerobic digestion
-
Collins G., Mahony T., and O'Flaherty V. Stability reproducibility and response to perturbations of high-rate psychrophilic anaerobic digestion. FEMS Microbiol. Ecol. 55 (2006) 449-458
-
(2006)
FEMS Microbiol. Ecol.
, vol.55
, pp. 449-458
-
-
Collins, G.1
Mahony, T.2
O'Flaherty, V.3
-
11
-
-
32044439315
-
Distribution, localization, and phylogeny of abundant populations of Crenarchaeota in anaerobic granular sludge
-
Collins G., O'Connor L., Mahony T., Gieseke A., de Beer D., and O'Flaherty V. Distribution, localization, and phylogeny of abundant populations of Crenarchaeota in anaerobic granular sludge. Appl. Environ. Microbiol. 71 (2005) 7523-7527
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7523-7527
-
-
Collins, G.1
O'Connor, L.2
Mahony, T.3
Gieseke, A.4
de Beer, D.5
O'Flaherty, V.6
-
12
-
-
0242380172
-
Microbial diversity and methanogenic activity during start-up of psychrophilic anaerobic digesters treating synthetic industrial wastewaters
-
Collins G., Woods A., McHugh S., Carton M.W., and O'Flaherty V. Microbial diversity and methanogenic activity during start-up of psychrophilic anaerobic digesters treating synthetic industrial wastewaters. FEMS Microbiol. Ecol. 46 (2003) 159-170
-
(2003)
FEMS Microbiol. Ecol.
, vol.46
, pp. 159-170
-
-
Collins, G.1
Woods, A.2
McHugh, S.3
Carton, M.W.4
O'Flaherty, V.5
-
13
-
-
33344478486
-
Development of microbial community structure and activity in a high-rate anaerobic bioreactor at 18 °C
-
Connaughton S., Collins G., and O'Flaherty V. Development of microbial community structure and activity in a high-rate anaerobic bioreactor at 18 °C. Water Res. 40 (2006) 1009-1017
-
(2006)
Water Res.
, vol.40
, pp. 1009-1017
-
-
Connaughton, S.1
Collins, G.2
O'Flaherty, V.3
-
14
-
-
0035003594
-
Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digester ecosystem
-
Delbes C., Moletta R., and Godon J.J. Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digester ecosystem. FEMS Microbiol. Ecol. 35 (2001) 19-26
-
(2001)
FEMS Microbiol. Ecol.
, vol.35
, pp. 19-26
-
-
Delbes, C.1
Moletta, R.2
Godon, J.J.3
-
15
-
-
0026755238
-
Archaea in coastal marine sediments
-
DeLong E.F. Archaea in coastal marine sediments. Proc. Natl. Acad. Sci. USA. 89 (1992) 5685-5689
-
(1992)
Proc. Natl. Acad. Sci. USA.
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
16
-
-
27744587279
-
Low-temperature anaerobic biological treatment of solvent-containing pharmaceutical wastewater
-
Enright A.M., McHugh S., Collins G., and O'Flaherty V. Low-temperature anaerobic biological treatment of solvent-containing pharmaceutical wastewater. Water Res. 39 (2005) 4587-4596
-
(2005)
Water Res.
, vol.39
, pp. 4587-4596
-
-
Enright, A.M.1
McHugh, S.2
Collins, G.3
O'Flaherty, V.4
-
17
-
-
0344721475
-
How stable is stable? Function versus community composition
-
Fernandez A., Huang S., Seston S., Xing J., Hickey R., Criddle C., and Tiedje J. How stable is stable? Function versus community composition. Appl. Environ. Microbiol. 65 (1999) 3697-3704
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3697-3704
-
-
Fernandez, A.1
Huang, S.2
Seston, S.3
Xing, J.4
Hickey, R.5
Criddle, C.6
Tiedje, J.7
-
18
-
-
0346499634
-
Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community
-
Ginige M.P., Hugenholtz P., Daims H., Wagner M., Keller J., and Blakall L.L. Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl. Environ. Microbiol. 70 (2004) 588-596
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 588-596
-
-
Ginige, M.P.1
Hugenholtz, P.2
Daims, H.3
Wagner, M.4
Keller, J.5
Blakall, L.L.6
-
19
-
-
0025799482
-
Bacteriological composition and structure of granular sludge adapted to different substrates
-
Grotenhuis J.T.C., Smit M., Plugge C.M., Yuansheng X., van Lammeren A.A.M., M. Stams A.J., and Zehnder A.J.B. Bacteriological composition and structure of granular sludge adapted to different substrates. Appl. Environ. Microbiol. 57 (1991) 1942-1949
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1942-1949
-
-
Grotenhuis, J.T.C.1
Smit, M.2
Plugge, C.M.3
Yuansheng, X.4
van Lammeren, A.A.M.5
M. Stams, A.J.6
Zehnder, A.J.B.7
-
20
-
-
0019903429
-
Methanothrix soehngenii gen. Nov. sp. Nov., a new acetotrophic non-hydrogen-oxidisimethane methane bacterium
-
Huser B.A., Wuhrmann K., and Zehnder A.J.B. Methanothrix soehngenii gen. Nov. sp. Nov., a new acetotrophic non-hydrogen-oxidisimethane methane bacterium. Arch. Microbiol. 132 (1982) 1-9
-
(1982)
Arch. Microbiol.
, vol.132
, pp. 1-9
-
-
Huser, B.A.1
Wuhrmann, K.2
Zehnder, A.J.B.3
-
22
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analysis
-
Lane D., Pace J.B., Olsen G.J., Stahl D.A., Solgin M.L., and Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analysis. Proc. Natl. Acad. Sci. USA. 82 (1985) 6955-6959
-
(1985)
Proc. Natl. Acad. Sci. USA.
, vol.82
, pp. 6955-6959
-
-
Lane, D.1
Pace, J.B.2
Olsen, G.J.3
Stahl, D.A.4
Solgin, M.L.5
Pace, N.R.6
-
23
-
-
0035451483
-
Challenge of psychrophilic anaerobic wastewater treatment
-
Lettinga G., Rebac S., and Zeeman G. Challenge of psychrophilic anaerobic wastewater treatment. Trends Biotechnol. 19 (2001) 363-370
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 363-370
-
-
Lettinga, G.1
Rebac, S.2
Zeeman, G.3
-
24
-
-
84985666212
-
Use of the upflow sludge blanket (UASB) reactor concept for biological wastewater treatment, especially for anaerobic treatment
-
Lettinga G., van Velsen A.F.M., Hobma S.W., de Zeeuw W.J., and Klapwijk A. Use of the upflow sludge blanket (UASB) reactor concept for biological wastewater treatment, especially for anaerobic treatment. Biotechnol. Bioeng. 22 (1980) 699-734
-
(1980)
Biotechnol. Bioeng.
, vol.22
, pp. 699-734
-
-
Lettinga, G.1
van Velsen, A.F.M.2
Hobma, S.W.3
de Zeeuw, W.J.4
Klapwijk, A.5
-
26
-
-
0033868092
-
Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
-
Marsh T.J., Saxman P., Cole J., and Tiedje J. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl. Environ. Microbiol. 66 (2000) 3616-3620
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3616-3620
-
-
Marsh, T.J.1
Saxman, P.2
Cole, J.3
Tiedje, J.4
-
27
-
-
0037469604
-
Methanogenic population structure in a variety of anaerobic bioreactors
-
McHugh S., Carton M., Mahony T., and O'Flaherty V. Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol. Lett. 219 (2003) 297-304
-
(2003)
FEMS Microbiol. Lett.
, vol.219
, pp. 297-304
-
-
McHugh, S.1
Carton, M.2
Mahony, T.3
O'Flaherty, V.4
-
28
-
-
2442528190
-
Reactor performance and microbial community dynamics during anaerobic biological treatment of wastewaters at 16-37 °C
-
McHugh S., Carton M., Collins G., and O'Flaherty V. Reactor performance and microbial community dynamics during anaerobic biological treatment of wastewaters at 16-37 °C. FEMS Microbiol. Ecol. 48 (2004) 369-378
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, pp. 369-378
-
-
McHugh, S.1
Carton, M.2
Collins, G.3
O'Flaherty, V.4
-
29
-
-
33646861996
-
Long-term, high-rate anaerobic biological treatment of whey wastewaters at psychrophilic temperatures
-
McHugh S., Collins G., and O'Flaherty V. Long-term, high-rate anaerobic biological treatment of whey wastewaters at psychrophilic temperatures. Bioresour. Technol. 97 (2006) 1669-1678
-
(2006)
Bioresour. Technol.
, vol.97
, pp. 1669-1678
-
-
McHugh, S.1
Collins, G.2
O'Flaherty, V.3
-
30
-
-
25444445054
-
Anaerobic granular sludge bioreactor technology
-
McHugh S., O'Reilly C., Mahony T., Colleran E., and O'Flaherty V. Anaerobic granular sludge bioreactor technology. Rev. Environ. Sci. Biotechnol. 2 (2003) 225-245
-
(2003)
Rev. Environ. Sci. Biotechnol.
, vol.2
, pp. 225-245
-
-
McHugh, S.1
O'Reilly, C.2
Mahony, T.3
Colleran, E.4
O'Flaherty, V.5
-
31
-
-
0028165830
-
Group-specific rRNA hybridization probes to describe natural communities of methanogens
-
Raskin L., Stromley J.M., Rittmann B.E., and Stahl D.A. Group-specific rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60 (1994) 1232-1240
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 1232-1240
-
-
Raskin, L.1
Stromley, J.M.2
Rittmann, B.E.3
Stahl, D.A.4
-
32
-
-
84939597568
-
-
S. Rebac, Psychrophilic anaerobic treatment of low strength wastewater. Ph.D. Thesis, Agricultural University, Wageningen, The Netherlands, 1998.
-
-
-
-
33
-
-
0032899819
-
Differentiation of Methanosaeta concilii and Methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent in situ hybridization and confocal scanning laser microscopy
-
Rocheleau S., Greer C.W., Lawrence J.R., Cantin C., Laramée L., and Guiot S.R. Differentiation of Methanosaeta concilii and Methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent in situ hybridization and confocal scanning laser microscopy. Appl. Environ. Microbiol. 65 (1999) 2222-2229
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2222-2229
-
-
Rocheleau, S.1
Greer, C.W.2
Lawrence, J.R.3
Cantin, C.4
Laramée, L.5
Guiot, S.R.6
-
34
-
-
33645087671
-
Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor
-
Roest K., Altinbas M., Paulo P.L., Heilig H.G.H.J., Akkermans A.D.L., Smidt H., de Vos W.M., and Stams A.J.M. Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor. Microbial Ecol. 50 (2005) 440-446
-
(2005)
Microbial Ecol.
, vol.50
, pp. 440-446
-
-
Roest, K.1
Altinbas, M.2
Paulo, P.L.3
Heilig, H.G.H.J.4
Akkermans, A.D.L.5
Smidt, H.6
de Vos, W.M.7
Stams, A.J.M.8
-
35
-
-
0023375195
-
The neighbour-joining method: a new method for constructing phylogenetic trees
-
Saito N., and Nei M. The neighbour-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saito, N.1
Nei, M.2
-
36
-
-
0030569901
-
Granular sludge formation in upflow anaerobic sludge blanket (UASB) reactors
-
Schmidt J.E., and Ahring B.K. Granular sludge formation in upflow anaerobic sludge blanket (UASB) reactors. Biotechnol. Bioeng. 49 (1996) 229-246
-
(1996)
Biotechnol. Bioeng.
, vol.49
, pp. 229-246
-
-
Schmidt, J.E.1
Ahring, B.K.2
-
37
-
-
0031832135
-
In situ structure/function studies in wastewater treatment systems
-
Schramm A., De Beer D., van den Heuvel H., Ottengraf S., and Amann R. In situ structure/function studies in wastewater treatment systems. Water Sci. Technol. 37 (1998) 413-416
-
(1998)
Water Sci. Technol.
, vol.37
, pp. 413-416
-
-
Schramm, A.1
De Beer, D.2
van den Heuvel, H.3
Ottengraf, S.4
Amann, R.5
-
38
-
-
84939597569
-
-
C. Scully, G. Collins, V. O'Flaherty, Wastewater treatment in an EGSB bioreactor at 9.5-15 °C: feasibility and development of microbial community structure. FEMS. Microbiol. Ecol., submitted for publication.
-
-
-
-
39
-
-
0033027522
-
Fluorescent in situ hybridisation using 16S rRNA-targeted oligonucleotide reveals localisation of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules
-
Sekiguchi Y., Kamagata Y., Nakamura K., Ohashi A., and Harada H. Fluorescent in situ hybridisation using 16S rRNA-targeted oligonucleotide reveals localisation of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Appl. Environ. Microbiol. 65 (1999) 1280-1288
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1280-1288
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Nakamura, K.3
Ohashi, A.4
Harada, H.5
-
40
-
-
0026035016
-
Growth characteristics and corrinoid production of Methanosarcina barkeri on methanol-acetate medium
-
Silveira R.G., Nishio N., and Nagai S. Growth characteristics and corrinoid production of Methanosarcina barkeri on methanol-acetate medium. J. Ferment. Bioeng. 71 (1991) 14-28
-
(1991)
J. Ferment. Bioeng.
, vol.71
, pp. 14-28
-
-
Silveira, R.G.1
Nishio, N.2
Nagai, S.3
-
41
-
-
0037031131
-
Characterisation of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions
-
Song B., Kerkhof L.J., and Haggblom M.M. Characterisation of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions. FEMS Microbiol. Lett. 213 (2002) 183-188
-
(2002)
FEMS Microbiol. Lett.
, vol.213
, pp. 183-188
-
-
Song, B.1
Kerkhof, L.J.2
Haggblom, M.M.3
-
42
-
-
0030799964
-
Whole-cell hybridization of Methanosarcina cells with two new oligonucleotide probes
-
Sorensen A.H., Torsvik V.L., Torsvik T., Poulsen L.K., and Ahring B.K. Whole-cell hybridization of Methanosarcina cells with two new oligonucleotide probes. Appl. Environ. Microbiol. 63 (1997) 3043-3050
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3043-3050
-
-
Sorensen, A.H.1
Torsvik, V.L.2
Torsvik, T.3
Poulsen, L.K.4
Ahring, B.K.5
-
44
-
-
84939597570
-
-
M.S. Switzenbaum, W.J. Jewell, Anaerobic attached film expanded bed reactor in the treatment of dilute organics. In: Proceedings of the 51st Annual WPCF Conference, Anaheim, California, 1978, pp. 1-64.
-
-
-
-
45
-
-
0027339723
-
Optimising fluorescent in situ hybridisation with rRNA- targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
Wallner G., Amann R.J., and Beisker W. Optimising fluorescent in situ hybridisation with rRNA- targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 (1993) 136-143
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.J.2
Beisker, W.3
-
46
-
-
0035177426
-
Methanol conversion in high-rate anaerobic reactors
-
Weijma J., and Stams A.J.M. Methanol conversion in high-rate anaerobic reactors. Water Sci. Technol. 44 (2001) 7-14
-
(2001)
Water Sci. Technol.
, vol.44
, pp. 7-14
-
-
Weijma, J.1
Stams, A.J.M.2
|