Distribution, localization, and phylogeny of abundant populations of Crenarchaeota in anaerobic granular sludge

Applied and Environmental Microbiology

Volumn 71, Issue 11, 2005, Pages 7523-7527

  Collins, Gavin ^a   O'Connor, Leanne ^a,c   Mahony, Thérèse ^a   Gieseke, Armin ^b   De Beer, Dirk ^b   O'Flaherty, Vincent ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^b MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

^c DUBLIN DENTAL UNIVERSITY HOSPITAL   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BETA IMAGING; MICROBIOTA;

CLONING; MICROORGANISMS; RNA; SEWAGE SLUDGE;

MICROBIOLOGY;

RIBOSOME RNA;

SLUDGE;

ARCHAEBACTERIUM; ARTICLE; CRENARCHAEOTA; FLUORESCENCE IN SITU HYBRIDIZATION; IMAGE ANALYSIS; METHANOBACTERIUM; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RNA GENE; SLUDGE;

ANAEROBIOSIS; CRENARCHAEOTA; DNA, ARCHAEAL; DNA, RIBOSOMAL; GENES, RRNA; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEWAGE; WASTE DISPOSAL, FLUID;

ARCHAEA; CRENARCHAEOTA; METHANOBACTERIUM;

EID: 32044439315     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.11.7523-7527.2005     Document Type: Article

References (25)

1. Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
2. Andreasen, K., and P. H. Nielsen. 1997. Application of microautoradiography to the study of substrate uptake by filamentous microorganisms in activated sludge. Appl. Environ. Microbiol. 63:3662-3668.
3. Bintrim, S. B., T. J. Donohue, J. Handelsman, G. P. Roberts, and R. M. Goodman. 1997. Molecular phylogeny of Archaea from soil. Proc. Natl. Acad. Sci. USA 94:277-282.
4. Bitton, G., B. Koopman, K. H. Jung, G. Voiland, and M. Kotob. 1993. Modification of the standard epifluorescence microscopic method for total bacterial counts in environmental-samples. Water Res. 27:1109-1112.
5. Burggraf, S., T. Mayer, R. I. Amann, S. Schadhauser, C. R. Woese, and K. O. Stetter. 1994. Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 60:3112-3119.
6. Cole, R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 1:442-443.
7. Collins, G., A. Woods, S. McHugh, M. W. Carton, and V. O'Flaherty. 2003. Microbial community structure and methanogenic activity during start-up of psychrophilic anaerobic digesters treating synthetic industrial wastewaters. FEMS Microbiol. Ecol. 46:159-170.
8. Collins, G., C. Foy, S. McHugh, and V. O'Flaherty. 2005. Anaerobic treatment of 2,4,6-trichlorophenol in an expanded granular sludge bed-anaerobic filter (EGSB-AF) bioreactor at 15°C. FEMS Microbiol. Ecol. 53:167-178.
9. Collins, G., S. McHugh, A. Kearney, and V. O'Flaherty. June 2004. Psychrophilic anaerobic digestion of a range of wastewaters: process technology, microbial activity and population dynamics. Water Intelligence Online. [Online.] http://www.waterintelligenceonline.com.
10. DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
11. DeLong, E. F. 1998. Everything in moderation: Archaea as "non-extremophiles." Curr. Opin. Genet. Dev. 8:649-654.
12. Jurgens, G., and A. Saano. 1999. Diversity of soil Archaea in boreal forest before and after clear-cutting and prescribed burning. FEMS Microbiol. Ecol. 29:205-213.
13. Jurgens, G., F. Glockner, R. I. Amann, A. Saano, L. Montonen, M. Likolammi, and U. Munster. 2000. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol. Ecol. 34:45-56.
14. Kudo, Y., T. Nakajima, T. Miyaki, and H. Oyaizu. 1997. Methanogen flora of paddy soils in Japan. FEMS Microbiol. Ecol. 22:39-48.
15. Lange, M., and B. K. Ahring. 2001. A comprehensive study into the molecular methodology and molecular biology of methanogenic Archaea. FEMS Microbiol. Rev. 25:553-555.
16. McHugh, S., M. W. Carton, G. Collins, and V. O'Flaherty. 2004. Reactor performance and microbial community dynamics during anaerobic biological treatment of wastewaters at 16-37°C. FEMS Microbiol. Ecol. 48:369-378.
17. Ochsenreiter, T., D. Selezi, A. Quaiser, L. Bonch-Osmolovskaya, and C. Schleper. 2003. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5:787.
18. Raskin, L., J. M. Stromley, B. E. Rittmann, and D. A. Stahl. 1994. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60:1232-1240.
19. Schramm, A., D. de Beer, M. Wagner, and R. I. Amann. 1998. Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl. Environ. Microbiol. 64:3480-3485.
20. Sekiguchi, Y., Y. Kamagata, K. Nakamura, A. Ohashi, and H. Harada. 1999. Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured Bacteria in mesophilic and thermophilic sludge granules. Appl. Environ. Microbiol. 65:1280-1288.
21. Stackebrandt, E., and M. Goodfellow. 1991. Nucleic acid techniques in bacterial systematics. Wiley, Chichester, England.
22. Stahl, D. A., and R. I. Amann. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd., Chichester, England.
23. Treude, T., K. Nauhaus, A. Gieseke, K. Knittel, A. Boetius, B. B. Joergensen, and W. Michaelis. 2003. Methanotrophic microbial mats forming reefs in the anoxic Black Sea. Geophys. Res. Abstr. 5:01732.
24. Wallner, G., R. I. Amann, and W. Beisker. 1993. Optimizing fluorescent in situ hybridisation with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14:136-143.
25. Zhou, J., M. A. Bruns, and J. M. Teidje. 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62:316-332.