Alkalimonas collagenimarina sp. nov., a psychrotolerant, obligate alkaliphile isolated from deep-sea sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 7, 2007, Pages 1549-1553

  Kurata, Atsushi ^a   Miyazaki, Masayuki ^a   Kobayashi, Tohru ^a   Nogi, Yuichi ^a   Horikoshi, Koki ^a  

^a JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; CHLORAMPHENICOL; CYTOSINE; ERYTHROMYCIN; GENTAMICIN; GUANINE; ISOPRENOID; KANAMYCIN; MONOUNSATURATED FATTY ACID; NALIDIXIC ACID; NEOMYCIN; NOVOBIOCIN; PENICILLIN G; QUINONE DERIVATIVE; RNA 16S; SATURATED FATTY ACID; STREPTOMYCIN; TETRACYCLINE;

AEROBIC BACTERIUM; ALKALIMONAS COLLAGENIMARINA; ALKALIMONAS DELAMERENSIS; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL CELL; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DEEP SEA; DNA DNA HYBRIDIZATION; GRAM NEGATIVE AEROBIC RODS AND COCCI; GRAM NEGATIVE BACTERIUM; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; SEQUENCE HOMOLOGY; TEMPERATURE;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; COLLAGEN; COLLAGENASES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAGELLA; GAMMAPROTEOBACTERIA; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROGEN-ION CONCENTRATION; JAPAN; LOCOMOTION; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TEMPERATURE;

ALKALIMONAS; ALKALIMONAS DELAMERENSIS; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 34547453699     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65084-0     Document Type: Article

References (23)

1. Barrow, G. I. & Feltham, R. K. A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
2. Baumann, L., Baumann, P., Mandel, M. & Allen, R. D. (1972). Taxonomy of aerobic marine eubacteria. J Bacteriol 110, 402-429.
3. Bond, M. D. & Van Wart, H. E. (1984). Characterization of the individual collagenases from Clostridium histolyticum. Biochemistry 23, 3085-3091.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Hisano, T., Abe, S., Wakashiro, M., Kimura, A. & Murata, K. (1989). Isolation and properties of collagenase with caseinolytic activity from Pseudomonas sp. J Ferment Bioeng 68, 399-403.
6. Horikoshi, K. (1999). Alkaliphiles: some applications of their products for biotechnology. Microbiol Mol Biol Rev 63, 735-750.
7. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. J Bacteriol 66, 22-26.
8. Khare, S. D., Krco, C. J., Griffiths, M. M., Luthra, H. S. & David, C. S. (1995). Oral administration of an immunodominant human collagen peptide modulates collagen-induced arthritis. J Immunol 155, 3653-3659.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. + antiporter from the soda lake haloalkaliphile Alkalimonas amylolytica is adaptive for the extreme environment. J Bacteriol 187, 7589-7595.
12. Ma, Y., Xue, Y., Grant, W. D., Collins, N. C., Duckworth, A. W., Van Steenbergen, R. P. & Jones, B. E. (2004). Alkalimonas amylolytica gen. nov., sp. nov., and Alkalimonas delamerensis gen. nov., sp. nov., novel alkaliphilic bacteria from soda lakes in China and East Africa. Extremophiles 8, 193-200.
13. Minakuchi, Y., Takeshita, F., Kosaka, N., Sasaki, H., Yamamoto, Y., Kouno, M., Honma, K., Nagahara, S., Hanai, K. & other authors (2004). Atelocollagen-mediated synthetic small interfering RNA delivery for effective gene silencing in vitro and in vivo. Nucleic Acids Res 32, e109.
14. Myers, L. K., Rosloniec, E. F., Sayer, J. M., Stuart, J. M. & Kang, A. H. (1993). A synthetic peptide analogue of a determinant of type II collagen prevents the onset of collagen-induced arthritis. J Immunol 150, 4652-4658.
15. Nakayama, T., Tsuruoka, N., Akai, M. & Nishino, T. (2000). Thermostable collagenolytic activity of a novel thermophilic isolate, Bacillus sp. strain NTAP-1. J Biosci Bioeng 89, 612-614.
16. Okamoto, M., Yonejima, Y., Tsujimoto, Y., Suzuki, Y. & Watanabe, K. (2001). A thermostable collagenolytic protease with a very large molecular mass produced by thermophilic Bacillus sp. strain MO-1. Appl Microbiol Biotechnol 57, 103-108.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Sasagawa, Y., Izaki, K., Matsubara, Y., Suzuki, K., Kojima, H. & Kamio, Y. (1995). Molecular cloning and sequence analysis of the gene encoding the collagenase from Cytophaga sp. L43-1 strain. Biosci Biotechnol Biochem 59, 2068-2073.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X., Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Watanabe, K. (2004). Collagenolytic proteases from bacteria. Appl Microbiol Biotechnol 63, 520-526.