Method validation of in vitro RNA transcript analysis on the Agilent 2100 bioanalyzer

Electrophoresis

Volumn 28, Issue 14, 2007, Pages 2368-2378

  Sodowich, Bruce I ^a   Fadl, Irini ^a   Burns, Craig ^a  

^a HOFFMANN LA ROCHE INC   (United States)

Author keywords

In vitro RNA transcription; Method validation; Microchip electrophoresis

Indexed keywords

ELECTROPHORESIS; MICROPROCESSOR CHIPS; RNA; SPECTROPHOTOMETRY;

2100 BIO ANALYZERS; AGAROSE; AGILENT; ETHIDIUM BROMIDE; IN VITRO RNA TRANSCRIPTION; IN-VITRO; METHOD VALIDATIONS; MICROCHIP ELECTROPHORESIS; RNA TRANSCRIPTION; TRANSCRIPT ANALYSIS;

IONIC STRENGTH;

BUFFER; ETHIDIUM BROMIDE; RNA;

ACCURACY; AGAR GEL ELECTROPHORESIS; ARTICLE; IN VITRO STUDY; INTERMETHOD COMPARISON; IONIC STRENGTH; MICROCHIP ELECTROPHORESIS; NONHUMAN; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; RNA ANALYSIS; RNA TRANSCRIPTION; SEPARATION TECHNIQUE; ULTRAVIOLET SPECTROPHOTOMETRY; VALIDATION PROCESS;

EID: 34547450576     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200600673     Document Type: Article

References (30)

1. Lindberg, R. L., De Groot, C. J., Certa, U., Ravid., R. et al., J. Neuroimmunol. 2004, 151, 154-167.
2. Volokhov, D., Chizhikov, V., Chumakov., K., Rasooly, A., J. Clin. Microbiol. 2003, 41, 4071-4080.
3. Bittcher, R. T., Pellet., N., Delius, H., Niehrs, C., Nat. Cell Biol. 2004, 6, 38-44.
4. Severance, E., Zhang, H., Cruz, Y., Pakhlevaniants, S. et al., Mol. Pharmacol. 2004, 66, 420-429.
5. Sampath, R, Mazumder, B., Seshadri, V., Fox, P. L., Mol. Cell. Biol. 2003, 160, 77-87.
6. Smith, L. L., Coller, H. A., Roberts, J. M., Nat. Cell Biol. 2003, 5, 474-479.
7. Saghizadeh., M., Brown, D. J., Tajbakhsh, J., Chen, Z. et al., Biomol. Eng. 2003, 20, 97-106.
8. Liu, C. L., Schreiber, S. L., Bernstein, B. E., BMC Genomics 2003, 19.
9. Kiger, A., Baum, B., Jones, S., Jones., M. et al., J. Biol. 2003, 2, 27.
10. Goto, A., Blandin, S., Royet, J., Reichhart, J. M. et al., Nucleic Acids Res. 2003, 31, 6619-6623.
11. Zhang, H., Emmons, S.W., Genetics 2002, 160, 799-803.
12. Golubovskaya, V., Kaur, A., Cance, W., Biochim. Biophys. Acta 2004, 1678, 111-125.
13. Rosenstraus, M., Wang, Z., Chang, S-Y., DeBonville, D. et al., J. Clin. Microbiol. 1998, 36, 191-197.
14. Sambrook, J., Russel, D. W., Molecular Cloning: A Laboratory Manual, 3rd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 2001, pp. 7.31-7.34.
15. Wilfinger, W. W., Mackey, K., Chomczynski, R, BioTechniques; 1997, 22, 474-481.
16. Randall, R. L., Damron, T. A., Coffin, C. M., Baster, J. D. et al., Clin. Orthop. Relat. Res 2005, 438, 149-157.
17. Řičicová, M., Palková, Z., FEMS Yeast Res. 2003, 4, 119-122.
18. Che, S., Ginsberg, S. D., Lab. Invest. 2004, 84, 131-137.
19. Nachamkin, I., Panaro, N. J., Li, M., Ung, H. et al., J. Clin. Microbiol. 2001, 39, 754-757.
20. Panaro, N. J., Ki, Yuen, R K., Sakzume, T., Fortina, P. et al., Clin. Chem. 2000, 46, 1851-1853.
21. Jabasini, M., Zhang, L., Dang, F., Xu., F. et al., Electrophoresis 2002, 23, 1537-1542.
22. Wang, E., Miller, L. D., Ohnmacht, G. A., Liu, E. T. et al., Nat. Biotech. 2000, 18, 457-459.
23. Hakak, Y, Walker, J. R., Li, C., Wong, W. H. et al., PNAS 2000, 98, 4746-4751.
24. Jost, J.-P., Oakeley, E. J., Zhu, B., Benjamin, D. et al., Nucleic Acids Res. 2001, 29, 4452-4461.
25. Daum, L. T., Chambers, J. P., Santiago, J, Hcikman, J. R. et al., Mol. Cell. Probes 2004, 18, 207-209.
26. Kabos, R, Matundan, H., Zandian, M., Bertolotto, C. et al., Biochem. Biophys. Res. Commun. 2004, 318, 955-963.
27. Stulnig, T. M., Amberger, A., BioTechniques 1994. 16, 403-404.
28. Mahanthappa, N., Pharmocogenomics 2005. 6, 879-883.
29. Huelsmann, P. M., Rauch, P., Allers, K., John, M. J. et al., Antiviral Res. 2006. 64, 1-9.
30. Krutzfeldt, J., Rajewsky, N., Braich, R., Rajeev, K. et al., Nature 2005, 438, 685-689.