Phylogenetic evaluation of subfamily classification of the Cyprinidae focusing on Vietnamese species

Aquatic Living Resources

Volumn 20, Issue 2, 2007, Pages 143-153

  Binh, Thanh Thai ^a,b   Van, Ngo Si ^b   Phuc, Dinh Phan ^c   Austin, Christopher M ^a  

^a CHARLES DARWIN UNIVERSITY   (Australia)

^b RESEARCH INSTITUTE FOR AQUACULTURE NO 1   (Viet Nam)

^c Research Institute for Aquaculture No 3   (Viet Nam)

Author keywords

Asia; Cyprinid; Cytochrome b; Mitochondrial RNA sequence; Phylogeny

Indexed keywords

CYPRINID; CYTOCHROME; PHYLOGENY; RNA; TAXONOMY;

ASIA; EURASIA; SOUTHEAST ASIA; VIET NAM;

CYCLOCHEILICHTHYS; CYPRINIDAE; CYPRINIFORMES; CYPRINUS; RASBORINAE;

EID: 34547427505     PISSN: 09907440     EISSN: 17652952     Source Type: Journal    
DOI: 10.1051/alr:2007025     Document Type: Article

References (37)

1. Briolay J., Galtier N., Brito R.M., Bouvet Y., 1998, Molecular phylogeny of Cyprinidae inferred from cytochrome b DNA sequences. Mol. Phylogenet. Evol. 9, 100-108.
2. Cavender T., Coburn M.M., 1992, Phylogenetic relationships of North American Cyprinidea. In: Mayden R.L. (Ed.) Systematics, historical ecology and North American freshwater fishes. Stanford University Press, CA, pp. 293-327.
3. Chen X., Yue P., Lin R., 1984, Major group within the family Cyprinidae and their phylogenetic relationships. Acta Zootaxon Sin. 9, 424-440.
4. Crandall K.A., Fetzner J.W., Lawler S.H., Kinnersley M., Austin C.M., 1999, Phylogenetic relationships among the Australian and New Zealand genera of freshwater crayfishes (Decapoda: Parastacidae). Aust. J. Zool. 47, 199-214.
5. Cunha C., Mesquita N., Dowling T.E., Gilles A., Coelho M.M., 2002, Phylogenetic relationships of Eurasian and American cyprinids using cytochrome-b sequences. J. Fish Biol. 61, 929-944.
6. Durand J.D., Tsigenopoulos C.S., Unlu E., Berrebi P., 2002, Phylogeny and biogeography of the family Cyprinidae in the Middle East inferred from cytochrome b DNA - Evolutionary significance of this region. Mol. Phylogenet. Evol. 22, 91-100.
7. FAO., 2003, Yearbook of fisheries statistic summary table. Available at: htt://ftp.fao.org/FI/STAT/summary/default.htm.
8. Felsenstein J., 1978, Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
9. Fuchs B.H., Schlee P., Blusch J., Werner T., Stein H., Rottmann O., 2000, Short Communication Phylogenetic studies in cyprinid species from central Europe by cytochrome b sequences of mitochondrial DNA. J. Appl. Ichthyol. 16, 79-82.
10. Gilles A., Lecointre G., Faure E., Chappaz R., Brun G., 1998, Mitochondrial phylogeny of the European cyprinids: Implications for their systematics, reticulate evolution, and colonization time. Mol. Phylogenet. Evol. 10, 132-143.
11. Gilles A., Lecointre G., Miquelis A., Loerstcher M., Chappaz R., Brun G., 2001, Partial combination applied to phylogeny of European cyprinids using the mitochondrial control region. Mol. Phylogenet. Evol. 19, 22-33.
12. Gosline W.A., 1978, Unbranched dorsal-fin rays and subfamily classification of the fish family Cyprinidae. Occas. Pap. Mus. Zool Univ. Mich. 684, 1-21.
13. Hasegawa M., Kishino H., Yano A.T., 1985, Dating of the human-ape splitting by molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174.
14. Hillis D.M., Huelsenbeck J.P., 1992, Signal, noise and reliability in molecular phylogenetic analysis. Heredity 83, 189-195.
15. Howes G., 1991, Systermatics and biogeography: an overview. In: Win I., Nelson J., (Eds). Cyprinids fishes: systematic biology and exploitation. New York: Chapman and Hall, pp. 1-54.
16. Huelsenbeck J.P., Ronquist F., 2001, MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
17. Liu H., Tzeng C.S., Teng H.Y., 2002, Sequences variation in the mtDNA control region and their implications for the phylogeny of the Cypriniformes. Can. J. Zool. 80, 569-581.
18. Liu H.Z., Chen Y.J., 2003, Phylogeny of the East Asian cyprinids inferred from sequences of the mitochondrial DNA control region. Can. J. Zool. 81, 1938-1946.
19. Mai D.Y., 1978, Freshwater Fish in Vietnam. Hanoi, Science and Technology Publisher (in Vietnamese).
20. Mai D.Y, Nguyen V.T., Le H.Y., Nguyen V.T., 1992, Taxonomy of Freshwater Fish in Southern Vietnam. Hanoi, Science and Technology Publisher (in Vietnamese).
21. Nelson J.S., 2006, Fishes of the world. New York, John Wiley and Sons.
22. Nguyen C.D., Tran M.T., Pham A.T., 2005, Carp genetic resources of Vietnam. In: Penman D., Gupta V.M., Dey M.M. (Eds). Carp genetic resources for aquaculture in Asia. Penang, World Fish Center, pp. 72-81.
23. Nguyen V.H., Ngo S.V., 2001, Vietnamese freshwater fish. Hanoi, Agriculture Publishing House (in Vietnamese).
24. Posada D., Crandall K.A., 1998, Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
25. Rainboth W.J., 1996. Fish of the Cambodian Mekong. Rome, Food and Agriculture Organization of the United Nations.
26. Saitoh K., Sado, T., Mayden, R.L., Hanzawa, N., Nakamura, K., Nishida, M., Miya M., 2006, Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): The first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences. J. Mol. Evol. 63, 826-841.
27. Shimodaira H., Hasegawa M., 1999, Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
28. Simon C., Franke A., Martin A., 1991, The polymerase chain reaction: DNA extraction and amplification. In: Hewitt G.M., Johnson A., Young J.P.W., (Eds). Molecular techniques in Taxonomy. Berlin, Springer-Verlag, pp. 329-355.
29. Swofford D.L., 2001, PAUP* phylogenetic analysis using parsimony (and other methods). version 4.0b4a: Sinauer Associates, Sunderland, Massachusetts.
30. Thai B.T., 2007, Molecular genetic studies on common carp (Cyprinus carpio L.) PhD, Charles Darwin University.
31. Thai B.T., Burridge C.P., Pham T.A., Austin C.M., 2004, Using mitochondrial nucleotide sequences to investigate diversity and genealogical relationships within common carp (Cyprinus carpio). Anim. Genet. 36, 23-28.
32. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G., 1997, The Clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
33. Truong T.K., Tran T.H., 1993, Taxonomy of Freshwater Fish in Cuu Long Delta. Can Tho: Can Tho University (in Vietnamese).
34. Wang X.Z., Li J.B., He S.P., 2007, Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei: Cypriniformes) derived from the nuclear recombination activating gene 2 sequences. Mol. Phylogenet. Evol. 42, 157-170.
35. Zardoya R., Doadrio I., 1998, Phylogenetic relationships of Iberian cyprinids: systematic and biogeographical implications. Proc. R. Soc. Lond. B. Biol. 265, 1365-1372.
36. Zardoya R., Doadrio I., 1999, Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. J. Mol. Evol. 49, 227-237.
37. Zardoya R., Economidis P.S., Doadrio I., 1999, Phylogenetic relationships of Greek Cyprinidae: Molecular evidence for at least two origins of the Greek cyprinid fauna. Mol. Phylogenet. Evol. 13, 122-131.