-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., Mann, M.: Mass spectrometry-based proteomics. Nature 422(6928), 198-207 (2003)
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
2542640024
-
Protein identification by mass spectrometry: Issues to be considered
-
Baldwin, M.A.: Protein identification by mass spectrometry: issues to be considered. Mol. Cell Proteomics 3(1), 1-9 (2004)
-
(2004)
Mol. Cell Proteomics
, vol.3
, Issue.1
, pp. 1-9
-
-
Baldwin, M.A.1
-
3
-
-
12344269924
-
GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle, E.I., Weng, S., et al.: GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18), 3710-3715 (2004)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
-
4
-
-
7044272787
-
Potential for false positive identifications from large databases through tandem mass spectrometry
-
Cargile, B.J., Bundy, J.L., et al.: Potential for false positive identifications from large databases through tandem mass spectrometry. J Proteome Res. 3(5), 1082-1085 (2004)
-
(2004)
J Proteome Res
, vol.3
, Issue.5
, pp. 1082-1085
-
-
Cargile, B.J.1
Bundy, J.L.2
-
5
-
-
0034852208
-
An introduction to quadrupole-time-of-flight mass spectrometry
-
Chernushevich, I., Loboda, A., et al.: An introduction to quadrupole-time-of-flight mass spectrometry. Journal of Mass Spectrometry 26, 859-865 (2001)
-
(2001)
Journal of Mass Spectrometry
, vol.26
, pp. 859-865
-
-
Chernushevich, I.1
Loboda, A.2
-
6
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig, R., Beavis, R.C.: TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20(9), 1466-1467 (2004)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
7
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyo, D., Beavis, R.C.: A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 75(4), 768-774 (2003)
-
(2003)
Anal. Chem
, vol.75
, Issue.4
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
8
-
-
0034582319
-
Automated Reduction and Interpretation of High Resolution Electrospray Mass Spectra of Large Molecules
-
Horn, D.M., Zubarev, R.A., et al.: Automated Reduction and Interpretation of High Resolution Electrospray Mass Spectra of Large Molecules. Journal of American Society for Mass Spectrometry 11, 320-322 (2000)
-
(2000)
Journal of American Society for Mass Spectrometry
, vol.11
, pp. 320-322
-
-
Horn, D.M.1
Zubarev, R.A.2
-
9
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack, D.A., Dennis, Jr., G., et al.: Identifying biological themes within lists of genes with EASE. Genome Biol, vol. 4(10) (2003)
-
(2003)
Genome Biol
, vol.4
, Issue.10
-
-
Hosack, D.A.1
Dennis Jr., G.2
-
10
-
-
4444321495
-
Analysis of the Low Molecular Weight Fraction of Serum by LC-Dual ESI-FT-ICR Mass Spectrometry: Precision of Retention Time, Mass, and Ion Abundance
-
Johnson, K.L., Mason, C.J., et al.: Analysis of the Low Molecular Weight Fraction of Serum by LC-Dual ESI-FT-ICR Mass Spectrometry: Precision of Retention Time, Mass, and Ion Abundance. Analytical Chemistry 76, 5097-5103 (2004)
-
(2004)
Analytical Chemistry
, vol.76
, pp. 5097-5103
-
-
Johnson, K.L.1
Mason, C.J.2
-
11
-
-
33746930864
-
-
analysis platform utilizing open XML file formats. Molecular Systems Biology
-
Keller, A., Eng, J., et al.: A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Molecular Systems Biology (2005)
-
(2005)
A uniform proteomics MS/MS
-
-
Keller, A.1
Eng, J.2
-
12
-
-
3042818018
-
The International Protein Index: An integrated database for proteomics experiments
-
Kersey, P.J., Duarte, J., et al.: The International Protein Index: an integrated database for proteomics experiments. Proteomics 4(7), 1985-1988 (2004)
-
(2004)
Proteomics
, vol.4
, Issue.7
, pp. 1985-1988
-
-
Kersey, P.J.1
Duarte, J.2
-
14
-
-
20144365752
-
Experimental Peptide Identification Repository (EPIR): An integrated peptide-centric platform for validation and mining of tandem mass spectrometry data
-
Kristensen, D.B., Brand, J.C., et al.: Experimental Peptide Identification Repository (EPIR): an integrated peptide-centric platform for validation and mining of tandem mass spectrometry data. Mol. Cell Proteomics 3(10), 1023-1038 (2004)
-
(2004)
Mol. Cell Proteomics
, vol.3
, Issue.10
, pp. 1023-1038
-
-
Kristensen, D.B.1
Brand, J.C.2
-
15
-
-
0344737959
-
Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry
-
Li, X.-J., Zhang, H., et al.: Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry. Analytical Chemistry 75(23), 6648-6657 (2003)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.23
, pp. 6648-6657
-
-
Li, X.-J.1
Zhang, H.2
-
16
-
-
0742269626
-
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum
-
Lilien, R., Farid, H., et al.: Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. Journal of Computational Biology 10(6), 925-946 (2003)
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.6
, pp. 925-946
-
-
Lilien, R.1
Farid, H.2
-
17
-
-
17844394177
-
Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry
-
Listgarten, J., Emili, A.: Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry. Mol. Cell Proteomics 4(4), 419-434 (2005)
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.4
, pp. 419-434
-
-
Listgarten, J.1
Emili, A.2
-
18
-
-
31444433469
-
Guest Editors' Introduction to the Special Section on Scientific Workflows
-
Ludascher, B., Goble, C.: Guest Editors' Introduction to the Special Section on Scientific Workflows. SIGMOD Rec. 34(3), 4-5 (2005)
-
(2005)
SIGMOD Rec
, vol.34
, Issue.3
, pp. 4-5
-
-
Ludascher, B.1
Goble, C.2
-
19
-
-
0346122950
-
A Correlation Algorithm for the Automated Quantitative Analysis of Shothun Proteomics
-
MacCoss, M.J., Wu, C.C., et al.: A Correlation Algorithm for the Automated Quantitative Analysis of Shothun Proteomics. Analytical Chemistry 75(24), 6912-6921 (2003)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.24
, pp. 6912-6921
-
-
MacCoss, M.J.1
Wu, C.C.2
-
20
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A.I., Keller, A., et al.: A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75(17), 4646-4658 (2003)
-
(2003)
Anal. Chem
, vol.75
, Issue.17
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
-
21
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli, P.G., Eng, J.K., et al.: A common open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol 22(11), 1459-1466 (2004)
-
(2004)
Nat. Biotechnol
, vol.22
, Issue.11
, pp. 1459-1466
-
-
Pedrioli, P.G.1
Eng, J.K.2
-
22
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., et al.: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20(18), 3551-3567 (1999)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
-
23
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Petricoin, E., Ardekani, A., et al.: Use of proteomic patterns in serum to identify ovarian cancer. Lancet 7(9306), 572-577 (2002)
-
(2002)
Lancet
, vol.7
, Issue.9306
, pp. 572-577
-
-
Petricoin, E.1
Ardekani, A.2
-
24
-
-
58149208985
-
Automated Assignment of Charge States from Resolved Isotopic Peaks for Multiply Charged Ions
-
Senko, M., Beu, S., et al.: Automated Assignment of Charge States from Resolved Isotopic Peaks for Multiply Charged Ions. Journal of American Society for Mass Spectrometry 6, 52-56 (1995)
-
(1995)
Journal of American Society for Mass Spectrometry
, vol.6
, pp. 52-56
-
-
Senko, M.1
Beu, S.2
-
25
-
-
31444456909
-
A Survey of Data Provenance in e-Science
-
Simmhan, Y., Piale, B., et al.: A Survey of Data Provenance in e-Science. SIGMOD Rec. 34(3), 31-36 (2005)
-
(2005)
SIGMOD Rec
, vol.34
, Issue.3
, pp. 31-36
-
-
Simmhan, Y.1
Piale, B.2
-
27
-
-
0025424768
-
New Developments in Biochemical Mass Spectrometry: Electrospray Ionization
-
Smith, R., Loo, J., et al.: New Developments in Biochemical Mass Spectrometry: Electrospray Ionization. Analytical Chemistry 62, 882-899 (1990)
-
(1990)
Analytical Chemistry
, vol.62
, pp. 882-899
-
-
Smith, R.1
Loo, J.2
-
28
-
-
3042765151
-
Novel Linear Quadrupole Ion Trap/FT Mass Spectrometer: Performance Characterization and Use in the Comparative Analysis of Histone H3 Post-translational Modifications
-
Syka, J., Marto, J., et al.: Novel Linear Quadrupole Ion Trap/FT Mass Spectrometer: Performance Characterization and Use in the Comparative Analysis of Histone H3 Post-translational Modifications. Journal of Proteomics Research 3, 621-626 (2004)
-
(2004)
Journal of Proteomics Research
, vol.3
, pp. 621-626
-
-
Syka, J.1
Marto, J.2
-
29
-
-
0036393898
-
DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D.L., McDonald, W.H., et al.: DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res. 1(1), 21-26 (2002)
-
(2002)
J Proteome Res
, vol.1
, Issue.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
-
30
-
-
0037337307
-
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
-
Taylor, C.F., Paton, N.W., et al.: A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat. Biotech 21(3), 247-254 (2003)
-
(2003)
Nat. Biotech
, vol.21
, Issue.3
, pp. 247-254
-
-
Taylor, C.F.1
Paton, N.W.2
-
31
-
-
7044241344
-
DBParser: Web-based software for shotgun proteomic data analyses
-
Yang, X., Dondeti, V., et al.: DBParser: web-based software for shotgun proteomic data analyses. J Proteome Res. 3(5), 1002-1008 (2004)
-
(2004)
J Proteome Res
, vol.3
, Issue.5
, pp. 1002-1008
-
-
Yang, X.1
Dondeti, V.2
-
32
-
-
0038175144
-
GoMiner: A resource for biological interpretation of genomic and proteomic data
-
Zeeberg, B.R., Feng, W., et al.: GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol, vol. 4(4) (2003)
-
(2003)
Genome Biol
, vol.4
, Issue.4
-
-
Zeeberg, B.R.1
Feng, W.2
-
33
-
-
0032010153
-
A Universal Algorithm for Fast and Automated Charge State Deconvolution of Electrospray Mass-to-Charge Ratio Spectra
-
Zhang, Z., Marshall, A.: A Universal Algorithm for Fast and Automated Charge State Deconvolution of Electrospray Mass-to-Charge Ratio Spectra. Journal of American Society for Mass Spectrometry 9, 320-332 (1998)
-
(1998)
Journal of American Society for Mass Spectrometry
, vol.9
, pp. 320-332
-
-
Zhang, Z.1
Marshall, A.2
|