Thiohalomonas denitrificans gen. nov., sp. nov. and Thiohalomonas nitratireducens sp. nov., novel obligately chemolithoautotrophic, moderately halophilic, thiodenitrifying Gammaproteobacteria from hypersaline habitats

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 7, 2007, Pages 1582-1589

  Sorokin, Dimitry Yu ^a,b   Tourova, Tatjana P ^a   Braker, Gesche ^c   Muyzer, Gerard ^b  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^c MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; NITRITE; NITROUS OXIDE; SODIUM CHLORIDE; SULFATE; SULFITE; THIOCYANATE; THIOSULFATE;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOLITHOAUTOTROPH; COCULTURE; CONTROLLED STUDY; DENITRIFICATION; GAMMAPROTEOBACTERIA; GENETIC ANALYSIS; HALOPHILIC BACTERIUM; LAKE SEDIMENT; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PHENOTYPE; PRIORITY JOURNAL; SPECIES HABITAT; THIOHALOMONAS DENITRIFICANS; THIOHALOMONAS NITRATIREDUCENS;

AEROBIOSIS; ANAEROBIOSIS; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; NITRATES; NITRITES; NITROGEN; OXIDATION-REDUCTION; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SULFUR; THIOSULFATES;

GAMMAPROTEOBACTERIA; VIBRIO;

EID: 34547409811     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65112-0     Document Type: Article

References (25)

1. Antón, J., Oren, A., Benlloch, S., Rodríguez-Valera, F., Amann, R. & Rosselló-Mora, R. (2002). Salinibacter ruber gen. nov., sp. nov., a new species of extremely halophilic bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 52, 485-491.
2. Braker, G., Fesefeldt, A. & Witzel, K.-P. (1998). Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64, 3769-3775.
3. De Ley, J., Caffon, H. & Reinaerts, A. (1970). The quantitative measurements of hybridisation DNA from renaturation rates. Eur J Biochem 12, 133-140.
4. Felsenstein, J. (1989). PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5, 164-166.
5. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. H. Munro. New York: Academic Press.
6. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
7. Oren, A. (1999). Bioenergetic aspects of halophilism. Microbiol Mol Biol Rev 63, 334-348.
8. Oren, A. (2002). Halophilic Microorganisms and Their Environments. Dordrecht, The Netherlands: Kluwer.
9. 12-Bedürfnis phototropher Schwefelbacterien. Arch Microbiol 55, 245-256.
10. Schäfer, H. & Muyzer, G. (2001). Denaturing gradient gel electrophoresis in marine microbial ecology. Methods Microbiol 30, 425-468.
11. Silva, M. T., Sousa, J. C. F., Polonia, J. J., Macedo, M. A. E. & Parente, A. M. (1976). Bacterial mesosomes. Real structures or artifacts? Biochim Biophys Acta 443, 92-105.
12. Sorokin, D. Yu. & Kuenen, J. G. (2005). Haloalkaliphilic sulfur-oxidizing bacteria in soda lakes. FEMS Microbiol Rev 29, 685-702.
13. Sorokin, D. Yu., Kuenen, J. G. & Jetten, M. (2001a). Denitrification at extremely alkaline conditions in obligately autotrophic alkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio denitrificans. Arch Microbiol 175, 94-101.
14. Sorokin, D. Yu., Tourova, T. P., Lysenko, A. M. & Kuenen, J. G. (2001b). Microbial thiocyanate utilization under highly alkaline conditions. Appl Environ Microbiol 67, 528-538.
15. Sorokin, D. Yu., Tourova, T. P., Antipov, A. N., Muyzer, G. & Kuenen, J. G. (2004). Anaerobic growth of the haloalkaliphilic denitrifying sulphur-oxidising bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate. Microbiology 150, 2435-2442.
16. Sorokin, D. Yu., Tourova, T. P., Galinski, E. A., Belloch, C. & Tindall, B. J. (2006a). Extremely halophilic denitrifying bacteria from hypersaline inland lakes Halovibrio denitrificans sp. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio (Fendrich 1989) with the type species H. variabilis should be associated with DSM 3050. Int J Syst Evol Microbiol 56, 379-388.
17. Sorokin, D. Yu., Tourova, T. P., Lysenko, A. M. & Muyzer, G. (2006b). Culturable diversity of halophilic sulfur-oxidizing bacteria in hypersaline habitats. Microbiology 152, 3013-3023.
18. Sorokin, D. Yu., Tourova, T. P., Kolganova, T. V., Spiridonova, E. M., Berg, I. A. & Muyzer, G. (2006c). Thiomicrospira halophila sp. nov., a novel, moderately halophilic, obligately chemolithoautotrophic sulfur-oxidizing bacterium from hypersaline lakes. Int J Syst Evol Microbiol 56, 2375-2380.
19. Sorokin, D. Yu., Tourova, T. P., Bezsoudnova, E. Yu., Pol, A. & Muyzer, G. (2007). Denitrification in a binary culture and thiocyanate metabolism in Thiohalophilus thiocyanoxidans gen. nov. sp. nov. - a moderately halophilic chemolithoautotrophic sulfur-oxidizing Gammaproteobacterium from hypersaline lakes. Arch Microbiol 187, 441-450.
20. Valderrama, M. J., Monteoliva-Sanchez, M., Quesada, E. & Ramos-Cormenzana, A. (1998). Influence of salt concentration on the cellular fatty acid composition of the moderately halophilic bacterium Halomonas salina. Res Microbiol 149, 675-679.
21. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
22. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of aerobic moderately halophilic bacteria. Microbiol Mol Biol Rev 62, 504-544.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
24. Wood, A. P. & Kelly, D. P. (1991). Isolation and characterisation of Thiobacillus halophilus sp. nov., a sulphur-oxidizing autotrophic eubacterium from a Western Australian hypersaline lake. Arch Microbiol 156, 277-280.
25. Zhilina, T. N., Zavarzin, G. A., Rainey, F. A., Pikuta, E. N., Osipov, G. A. & Kostrikina, N. A. (1997). Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an alkaliphilic, sulfate-reducing bacterium. Int J Syst Bacteriol 47, 144-149.