메뉴 건너뛰기




Volumn 57, Issue 3, 2007, Pages 687-695

RNA secondary structure mathematical representation without degeneracy

Author keywords

[No Author keywords available]

Indexed keywords


EID: 34547227672     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (13)

References (29)
  • 1
    • 0141838681 scopus 로고    scopus 로고
    • New 3-D graphical representation of DNA sequences and their numerical characterization
    • C. X. Yuan, B. Liao, T. M. Wang, New 3-D graphical representation of DNA sequences and their numerical characterization, Chem. Phys. Lett., 379(2003), 412-417.
    • (2003) Chem. Phys. Lett , vol.379 , pp. 412-417
    • Yuan, C.X.1    Liao, B.2    Wang, T.M.3
  • 2
    • 3142704623 scopus 로고    scopus 로고
    • New 2D Graphical representation of DNA sequences
    • B. Liao, T. M. Wang, New 2D Graphical representation of DNA sequences, J. Comput. Chem, 25(2004), 1364-1368.
    • (2004) J. Comput. Chem , vol.25 , pp. 1364-1368
    • Liao, B.1    Wang, T.M.2
  • 3
    • 3542993295 scopus 로고    scopus 로고
    • 3-D graphical representation of DNA sequences and their numerical characterization
    • B. Liao, T. M. Wang, 3-D graphical representation of DNA sequences and their numerical characterization, J. Mol. Struct.(THEOCHEM), 681(2004), 209-212
    • (2004) J. Mol. Struct.(THEOCHEM) , vol.681 , pp. 209-212
    • Liao, B.1    Wang, T.M.2
  • 4
    • 1842525340 scopus 로고    scopus 로고
    • Analysis of similarity of DNA sequences based on 3D graphical representation
    • B. Liao, T. M. Wang, Analysis of similarity of DNA sequences based on 3D graphical representation, Chem. Phys. Lett., 388(2004), 195-200.
    • (2004) Chem. Phys. Lett , vol.388 , pp. 195-200
    • Liao, B.1    Wang, T.M.2
  • 6
    • 0034266159 scopus 로고    scopus 로고
    • On 3-D graphical representation of DNA primary sequence and their numerical characterization
    • M. Randic, M. Vracko, A. Nandy, S. C. Basak, On 3-D graphical representation of DNA primary sequence and their numerical characterization, J. Chem. Inf. Comput. Sci., 40(2000), 1235-1244.
    • (2000) J. Chem. Inf. Comput. Sci , vol.40 , pp. 1235-1244
    • Randic, M.1    Vracko, M.2    Nandy, A.3    Basak, S.C.4
  • 7
    • 0037435485 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of DNA sequences and their numberical characterization
    • M. Randic, M. Vracko, N. Lers, D. Plavsic, Novel 2-D graphical representation of DNA sequences and their numberical characterization, Chem. Phys. Lett., 368(2003), 1-6.
    • (2003) Chem. Phys. Lett , vol.368 , pp. 1-6
    • Randic, M.1    Vracko, M.2    Lers, N.3    Plavsic, D.4
  • 8
    • 0020659327 scopus 로고
    • H curves, a novel method of representaion of nucleotides series especially suited for long DNA sequences
    • E. Hamori, J. Ruskin, H curves, a novel method of representaion of nucleotides series especially suited for long DNA sequences, J. Biol. Chem., 258(1983), 1318-1327.
    • (1983) J. Biol. Chem , vol.258 , pp. 1318-1327
    • Hamori, E.1    Ruskin, J.2
  • 9
    • 0022428361 scopus 로고
    • Novel DNA sequence representations
    • E. Hamori, Novel DNA sequence representations, Nature, 314(1985),585-586.
    • (1985) Nature , vol.314 , pp. 585-586
    • Hamori, E.1
  • 10
    • 0022428479 scopus 로고
    • Simple DNA sequence representations
    • M. A. Gates, Simple DNA sequence representations, Nature, 316(1985), 219-219.
    • (1985) Nature , vol.316 , pp. 219-219
    • Gates, M.A.1
  • 11
    • 0000347441 scopus 로고
    • A new graphical representation and analysis of DNA sequence structure: Methodology and Application to Globin Genes
    • A. Nandy, A new graphical representation and analysis of DNA sequence structure: Methodology and Application to Globin Genes, Curr. Sci., 66(1994), 309-314.
    • (1994) Curr. Sci , vol.66 , pp. 309-314
    • Nandy, A.1
  • 12
    • 0029912285 scopus 로고    scopus 로고
    • Two-dimensional graphical representation of DNA sequences and intron-exon discrimination in intron-rich sequences
    • A. Nandy, Two-dimensional graphical representation of DNA sequences and intron-exon discrimination in intron-rich sequences, Comput. Appl. Biosci., 12(1996), 55-62.
    • (1996) Comput. Appl. Biosci , vol.12 , pp. 55-62
    • Nandy, A.1
  • 13
    • 10644258114 scopus 로고    scopus 로고
    • A 2D graphical representation of DNA sequence
    • B. Liao, A 2D graphical representation of DNA sequence, Chem. Phys. Lett., 401 (2005) 196-199.
    • (2005) Chem. Phys. Lett , vol.401 , pp. 196-199
    • Liao, B.1
  • 14
    • 12344296751 scopus 로고    scopus 로고
    • A 4D representation of DNA sequences and its application
    • B. Liao, M. S. Tan, K. Q. Ding, A 4D representation of DNA sequences and its application, Chem. Phys. Lett., 402(2005), 380-383
    • (2005) Chem. Phys. Lett , vol.402 , pp. 380-383
    • Liao, B.1    Tan, M.S.2    Ding, K.Q.3
  • 15
    • 14844288098 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on a condensed curve representation
    • B. Liao, Y. S. Zhang, K. Q. Ding, T.M. Wang, Analysis of similarity/dissimilarity of DNA sequences based on a condensed curve representation, J. Mol. Struct.( THEOCHEM), 717(2005), 199-203.
    • (2005) J. Mol. Struct.( THEOCHEM) , vol.717 , pp. 199-203
    • Liao, B.1    Zhang, Y.S.2    Ding, K.Q.3    Wang, T.M.4
  • 16
    • 0038606979 scopus 로고    scopus 로고
    • Exploring the repertoire of RNA secondary motifs using graph theory:implications for RNA design
    • H. H. Gan, S. Pasquali, T. Schlick, Exploring the repertoire of RNA secondary motifs using graph theory:implications for RNA design, Nucl. Acids Res., 31(2003), 2926-2943.
    • (2003) Nucl. Acids Res , vol.31 , pp. 2926-2943
    • Gan, H.H.1    Pasquali, S.2    Schlick, T.3
  • 17
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structure using tree comparisons
    • B. A. Shapiro, K. Z. Zhang, Comparing multiple RNA secondary structure using tree comparisons, Comput. Biomed. Res., 6(1990), 309-318.
    • (1990) Comput. Biomed. Res , vol.6 , pp. 309-318
    • Shapiro, B.A.1    Zhang, K.Z.2
  • 18
    • 0024386096 scopus 로고
    • Tree graphs of RNA secondary structures and their comparisons
    • S. Y. Le, R. Nussinov, J. V. Maizel, Tree graphs of RNA secondary structures and their comparisons, Comput. Biomed. Res., 22(1989), 461-473.
    • (1989) Comput. Biomed. Res , vol.22 , pp. 461-473
    • Le, S.Y.1    Nussinov, R.2    Maizel, J.V.3
  • 19
    • 2442647664 scopus 로고    scopus 로고
    • B. Liao, T. M. Wang, A 3D Graphical representation of RNA secondary structure, J. Biomol. Struc. Dyn. ,21(2004), 827-832.
    • B. Liao, T. M. Wang, A 3D Graphical representation of RNA secondary structure, J. Biomol. Struc. Dyn. ,21(2004), 827-832.
  • 20
    • 12144280854 scopus 로고    scopus 로고
    • On A Six-Dimensional Representation of RNA Secondary Structures
    • B. Liao, K. Q. Ding,T.M. Wang, On A Six-Dimensional Representation of RNA Secondary Structures, J. Biomol. Struc. Dyn., 22(2005), 455-464.
    • (2005) J. Biomol. Struc. Dyn , vol.22 , pp. 455-464
    • Liao, B.1    Ding, K.Q.2    Wang, T.M.3
  • 21
    • 30344454726 scopus 로고    scopus 로고
    • On A Seven-Dimensional Representation of RNA Secondary Structures
    • B. Liao, T. M. Wang, K.Q. Ding, On A Seven-Dimensional Representation of RNA Secondary Structures, Mol Simu., 31(14), 2005, 1063-1071.
    • (2005) Mol Simu , vol.31 , Issue.14 , pp. 1063-1071
    • Liao, B.1    Wang, T.M.2    Ding, K.Q.3
  • 22
    • 0026585152 scopus 로고
    • Long-range correlations in nucleotide sequences
    • C. K. Peng, S. V. Buldyrev, A. L. Goldberger, Long-range correlations in nucleotide sequences, Nature, 356(1992),168-170.
    • (1992) Nature , vol.356 , pp. 168-170
    • Peng, C.K.1    Buldyrev, S.V.2    Goldberger, A.L.3
  • 23
    • 25844481569 scopus 로고    scopus 로고
    • Application of 2-D graphical representation of DNA sequence
    • B. Liao , M. S. Tan, K. Q. Ding, Application of 2-D graphical representation of DNA sequence, Chem. Phys. Lett., 414(2005), 296-300.
    • (2005) Chem. Phys. Lett , vol.414 , pp. 296-300
    • Liao, B.1    Tan, M.S.2    Ding, K.Q.3
  • 24
    • 25644443222 scopus 로고    scopus 로고
    • Graphical Approach to Analyzing DNA Sequences
    • B. Liao , K. Q. Ding, Graphical Approach to Analyzing DNA Sequences, J. Comput. Chem., 14(26), 2005, 1519-1523.
    • (2005) J. Comput. Chem , vol.14 , Issue.26 , pp. 1519-1523
    • Liao, B.1    Ding, K.Q.2
  • 25
    • 33845372678 scopus 로고    scopus 로고
    • 3D graphical representation of DNA sequence without degeneracy and its applications in constructing philogenic tree
    • B. Liao, W. Zhu, Y. Lin, 3D graphical representation of DNA sequence without degeneracy and its applications in constructing philogenic tree, MATCH Commun. Math. Comput. Chem., 56(2006), 209-216.
    • (2006) MATCH Commun. Math. Comput. Chem , vol.56 , pp. 209-216
    • Liao, B.1    Zhu, W.2    Lin, Y.3
  • 26
    • 33846345431 scopus 로고    scopus 로고
    • Similarity analysys of RNA secondary structures based on 4D representation
    • J. Gao, X. Zhang, Similarity analysys of RNA secondary structures based on 4D representation, MATCH Commun. Math. Comput. Chem., 56 (2006), 249-259.
    • (2006) MATCH Commun. Math. Comput. Chem , vol.56 , pp. 249-259
    • Gao, J.1    Zhang, X.2
  • 27
    • 8944242601 scopus 로고    scopus 로고
    • Structural elements of the 30-terminal coat protein binding site in alfalfa mosaic virus RNAs
    • C. B. E. M. Reusken, J. F. Bol, Structural elements of the 30-terminal coat protein binding site in alfalfa mosaic virus RNAs, Nucl. Acids Res., 14(1996), 2660-2665.
    • (1996) Nucl. Acids Res , vol.14 , pp. 2660-2665
    • Reusken, C.B.E.M.1    Bol, J.F.2
  • 28
    • 14844362993 scopus 로고    scopus 로고
    • Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs
    • S. Pasquali, H. H. Gan, T. Schlick, Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs, Nucl. Acids Res., 33(2005), 1384-1398.
    • (2005) Nucl. Acids Res , vol.33 , pp. 1384-1398
    • Pasquali, S.1    Gan, H.H.2    Schlick, T.3
  • 29
    • 33746863703 scopus 로고    scopus 로고
    • RNA secondary structure 3D graphical representation without degeneracy
    • J. W. Luo, B. Liao, R. F. Li, W. Zhu, RNA secondary structure 3D graphical representation without degeneracy, J. Math. Chem. 39(2006), 629-636.
    • (2006) J. Math. Chem , vol.39 , pp. 629-636
    • Luo, J.W.1    Liao, B.2    Li, R.F.3    Zhu, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.