A 3d graphical representation of rna secondary structures

Journal of Biomolecular Structure and Dynamics

Volumn 21, Issue 6, 2004, Pages 827-832

  Liao, Bo ^a   Wang, Tian Ming ^a  

^a DALIAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

3D graphical representation; RNA secondary structure; Similarity; Virus

Indexed keywords

ARGININE; CYTOSINE; GUANINE; RNA; URACIL; VIRUS RNA;

ALFALFA MOSAIC VIRUS; AMINO ACID SUBSTITUTION; ARTICLE; GENE DELETION; GENE INSERTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT VIRUS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

ALFALFA MOSAIC VIRUS; INSERTION SEQUENCES; MEDICAGO SATIVA;

EID: 2442647664     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2004.10506972     Document Type: Article

References (25)

1. Chantal, B. E. M., and Reusken, J. F.B., 1996. Nucleic Acids Research, 14:2660–2665.
2. Randic, M., Vracko, M., Lers, N., and Plavsic, D., 2003. Chemical Physics Letters, 371:202–207.
3. Randic, M., and Vracko, M., 2000. J. Chem. Inf. Comput. Sci, 40:599–606.
4. Liao, B., and Wang, T.-M., 2004. Chemical Physics Letters, 388:195–200.
5. Bafna, V., Muthukrisnan, S., and Ravi, R., 1995. Computer Science, 937:1–14.
6. Corpet, F., and Michot, B., 1995. Computer. Appl. Biosci., 10:389–399.
7. Le, S. Y., Nussinov, R., and Mazel, J. V., 1989. Computer Biomed. Res., 22:461–473.
8. Le, S. Y., Onens, J., Nussinov, R., Chen, J. H., Shapiro, B., and Mazel, J. R., 1989. Computer Biomed., 5:205–210.
9. Shapiro, B., 1998. Computer. Appl. Biosci., 4:387–393.
10. Shapiro, B., and Zhang, K., 1990. Computer Appl. Biosci., 6:309–318.
11. Zhang, K., 1998. Computing Similarity Between RNA Secondary Structures, Pro. IEEE. Internat. Joint Symp. On Intelligence and Sytems 126–132. Rockviue, Maryland May
12. Koper-Zwarthoff, E. C., Brederode, F. T., Walstra, P., and Bol, J. F., 1979. Nucleic Acids Research, 7:1887–1900.
13. Scott, S. W., and Ge, X., 1995. J. Gen. Virol., 76:957–963.
14. Koper-Zwarthoff, E. C., Brederode, F. T., Walstra, P., and Bol, J. F., 1980. Nucleic Acids Research, 8:3307–3318.
15. Cornelissen, B. J. C., Janssen, H., Zuidema, D., and Bol, J. F., 1984. Nucleic Acids Research, 12:2427–2437.
16. Alrefai, R. H., Shicl, P. J., Domier, L. L., D'Arcy, C. J., Berger, P. H., and Korban, S. S., 1994. J. Gen. Virol., 75:2847–2850.
17. Scott, S. W., and Ge, X., 1995. J. Gen. Virol., 76:1801–1806.
18. Bachman, E. J., Scott, S. W., Xin, G., and Bowman, V. V., 1994. Virology, 201:127–131.
19. Houser-Scott, F., Baer, M. L., Liem, K. F., Cai, J. M., and Gehrke, L., 1994. J. Virol, 68:2194–2205.
20. EMBL/GenBank/DDBJ databases. Accession no. X86352
21. Lovasz, L., and Pelikan, J. I., 1973. Period. Math Hung., 3:175–182.
22. Randic, M., 1998. J. Math. Chem., 24:345–358.
23. Randic, M., Plavsic, D., and Razinger, M., 1997. MATCH, 35:243–259.
24. Randic, M., Guo, X., and Bobst, S., 2000. “ Use of Matrices for Characterization of Molecular Structures. ”. In Discrete Mathematical Chemistry DIMACS Workshop on Discrete Mathematical Chemistry Edited by:Hansen, P., and Folwer, P., 305–322. RI:M. Zheng. Amer. Math. Soc. Providence.
25. Randic, M., 1997. Acta. Chim. Sloven., 44:57–77.