메뉴 건너뛰기




Volumn 31, Issue 14-15, 2005, Pages 1063-1071

On a seven-dimensional representation of RNA secondary structures

Author keywords

7D representation; RNA secondary structure; Similarity; Virus

Indexed keywords

MOLECULAR STRUCTURE; VIRUSES;

EID: 30344454726     PISSN: 08927022     EISSN: None     Source Type: Journal    
DOI: 10.1080/08927020500371332     Document Type: Article
Times cited : (13)

References (28)
  • 1
    • 8944242601 scopus 로고    scopus 로고
    • Structural elements of the 3′-terminal coat protein binding site in alfalfa mosaic virus RNAs
    • C.B.E.M. Reusken, J.F. Bol. Structural elements of the 3′-terminal coat protein binding site in alfalfa mosaic virus RNAs. Nucl. Acids Res., 14, 2660 (1996).
    • (1996) Nucl. Acids Res. , vol.14 , pp. 2660
    • Reusken, C.B.E.M.1    Bol, J.F.2
  • 2
    • 0037470662 scopus 로고    scopus 로고
    • Dejanplavsic. Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation
    • M. Randic, M. Vracko, N. Lers, Dejanplavsic. Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation. Chem. Phys. Lett., 371, 202 (2003).
    • (2003) Chem. Phys. Lett. , vol.371 , pp. 202
    • Randic, M.1    Vracko, M.2    Lers, N.3
  • 3
    • 0034186712 scopus 로고    scopus 로고
    • On the similarity of DNA primary sequences
    • M. Randic, M. Vracko. On the similarity of DNA primary sequences. J. Chem. Inf. Comput. Sci., 40, 599 (2000).
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 599
    • Randic, M.1    Vracko, M.2
  • 4
    • 0033628753 scopus 로고    scopus 로고
    • Condensed representation of DNA primary sequences
    • M. Randic. Condensed representation of DNA primary sequences. J. Chem. Inf. Comput. Sci., 40, 50 (2000).
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 50
    • Randic, M.1
  • 5
    • 0033628753 scopus 로고    scopus 로고
    • On a four-dimensional representation of DNA primary sequences
    • M. Randic, A.T. Balanba. On a four-dimensional representation of DNA primary sequences. J. Chem. Inf. Comput. Sci., 40, 50 (2000).
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 50
    • Randic, M.1    Balanba, A.T.2
  • 6
    • 0141838681 scopus 로고    scopus 로고
    • New 3-D graphical representation of DNA sequences and their numerical characterization
    • C. Yuan, B. Liao, T. Wang. New 3-D graphical representation of DNA sequences and their numerical characterization. Chem. Phys. Lett., 379, 412 (2003).
    • (2003) Chem. Phys. Lett. , vol.379 , pp. 412
    • Yuan, C.1    Liao, B.2    Wang, T.3
  • 7
    • 1842525340 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on 3-D graphical representation
    • B. Liao, T. Wang. Analysis of similarity/dissimilarity of DNA sequences based on 3-D graphical representation. Chem. Phys. Lett., 388, 195 (2004).
    • (2004) Chem. Phys. Lett. , vol.388 , pp. 195
    • Liao, B.1    Wang, T.2
  • 8
    • 0041698502 scopus 로고    scopus 로고
    • General combinatorics of RNA hairpins and cloverleaves
    • B. Liao, T. Wang. General combinatorics of RNA hairpins and cloverleaves. J. Chem. Inf. Comput. Sci., 43(4), 1138 (2003).
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , Issue.4 , pp. 1138
    • Liao, B.1    Wang, T.2
  • 9
    • 3542993295 scopus 로고    scopus 로고
    • 3-D graphical representation of DNA sequences and their numerical characterization
    • B. Liao, T. Wang. 3-D graphical representation of DNA sequences and their numerical characterization. J. Mol. Struct. (Theochem), 681, 209 (2004).
    • (2004) J. Mol. Struct. (Theochem) , vol.681 , pp. 209
    • Liao, B.1    Wang, T.2
  • 10
    • 3142704623 scopus 로고    scopus 로고
    • New 2D Graphical representation of DNA sequences
    • B. Liao, T. Wang. New 2D Graphical representation of DNA sequences. J. Comp. Chem., 25(11), 1364.
    • J. Comp. Chem. , vol.25 , Issue.11 , pp. 1364
    • Liao, B.1    Wang, T.2
  • 11
    • 5444223083 scopus 로고    scopus 로고
    • Analysis of similarity of DNA sequences based on triplets
    • B. Liao, T. Wang. Analysis of similarity of DNA sequences based on triplets. J. Chem. Inf. Comput. Sci., 44, 1666 (2004).
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1666
    • Liao, B.1    Wang, T.2
  • 12
    • 4143112342 scopus 로고    scopus 로고
    • General combinatorics of RNA secondary structure
    • B. Liao, T. Wang. General combinatorics of RNA secondary structure. Math. Biosci., 191, 69 (2004).
    • (2004) Math. Biosci. , vol.191 , pp. 69
    • Liao, B.1    Wang, T.2
  • 13
    • 33846647635 scopus 로고
    • Comparing similarity between RNA strings
    • V. Bafna, S. Muthukrisnan, R. Ravi. Comparing similarity between RNA strings. Comput. Sci., 937, 1 (1995).
    • (1995) Comput. Sci. , vol.937 , pp. 1
    • Bafna, V.1    Muthukrisnan, S.2    Ravi, R.3
  • 14
    • 0027982394 scopus 로고
    • RNA lign program: Alignment of RNA sequences using both primary and secondary structures
    • F. Corpet, B. Michot. RNA lign program: Alignment of RNA sequences using both primary and secondary structures. Computer. Appl. Biosci., 10(4), 389 (1995).
    • (1995) Computer. Appl. Biosci. , vol.10 , Issue.4 , pp. 389
    • Corpet, F.1    Michot, B.2
  • 15
    • 0024386096 scopus 로고
    • Tree graphs of RNA secondary structures and their comparison
    • S.Y. Le, R. Nussinov, J.V. Mazel. Tree graphs of RNA secondary structures and their comparison. Comput. Biomed. Res., 22, 461 (1989).
    • (1989) Comput. Biomed. Res. , vol.22 , pp. 461
    • Le, S.Y.1    Nussinov, R.2    Mazel, J.V.3
  • 16
    • 0024348264 scopus 로고
    • RNA secondary structures: Comparison and determination of frequently recurring sunstructures by consensus
    • S.Y. Le, J. Onens, R. Nussinov, J.H. Chen, B. Shapiro, J.R. Mazel. RNA secondary structures: Comparison and determination of frequently recurring sunstructures by consensus. Computer Biomed., 5, 205 (1989).
    • (1989) Computer Biomed. , vol.5 , pp. 205
    • Le, S.Y.1    Onens, J.2    Nussinov, R.3    Chen, J.H.4    Shapiro, B.5    Mazel, J.R.6
  • 17
    • 0024061490 scopus 로고    scopus 로고
    • An algorithm for comparing multiple RNA secondary structures
    • B. Shapiro. An algorithm for comparing multiple RNA secondary structures. Comput. Appl. Biosci., 4(3), 387 (1998).
    • (1998) Comput. Appl. Biosci. , vol.4 , Issue.3 , pp. 387
    • Shapiro, B.1
  • 18
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structures using tree comparisons
    • B. Shapiro, K. Zhang. Comparing multiple RNA secondary structures using tree comparisons. Computer. Appl. Biosci, 6(4), 309 (1990).
    • (1990) Computer. Appl. Biosci , vol.6 , Issue.4 , pp. 309
    • Shapiro, B.1    Zhang, K.2
  • 21
    • 0028965208 scopus 로고
    • The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilariruses
    • S.W. Scott, X. Ge. The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilariruses. J. Gen. Virol., 76, 957 (1995).
    • (1995) J. Gen. Virol. , vol.76 , pp. 957
    • Scott, S.W.1    Ge, X.2
  • 22
    • 0018945316 scopus 로고
    • Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus
    • E.G. Koper-Zwarthoff, F.Th. Brederode, P. Walstra, J.F. Bol. Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus. Nucl. Acids Res., 8, 3307 (1980).
    • (1980) Nucl. Acids Res. , vol.8 , pp. 3307
    • Koper-Zwarthoff, E.G.1    Brederode, F.Th.2    Walstra, P.3    Bol, J.F.4
  • 24
    • 0028141810 scopus 로고
    • The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviradae coat protein genes
    • R.H. Alrefai, P.J. Shicl, L.L. Domier, C.J. D'Arcy, P.H. Berger, S.S. Korban. The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviradae coat protein genes. J. Gen. Virol., 75, 2847 (1994).
    • (1994) J. Gen. Virol. , vol.75 , pp. 2847
    • Alrefai, R.H.1    Shicl, P.J.2    Domier, L.L.3    D'Arcy, C.J.4    Berger, P.H.5    Korban, S.S.6
  • 25
    • 0029041236 scopus 로고
    • The complete nucleotide sequence of the RNA 3 of lilac ring mottle ilarvirus
    • S.W. Scott, X. Ge. The complete nucleotide sequence of the RNA 3 of lilac ring mottle ilarvirus. J. Gen. Virol., 76, 1801 (1995).
    • (1995) J. Gen. Virol. , vol.76 , pp. 1801
    • Scott, S.W.1    Ge, X.2
  • 26
    • 0028236726 scopus 로고
    • The complete nucleotide sequence of prune dwarf ilarvirus RNA 3: Implications for coat protein activation of genome replication in ilarviruses
    • E.J. Bachman, S.W. Scott, G. Xin, V. Bowman Vance. The Complete Nucleotide Sequence of Prune Dwarf Ilarvirus RNA 3: Implications for Coat Protein Activation of Genome Replication in Ilarviruses. Virology, 201, 127 (1994).
    • (1994) Virology , vol.201 , pp. 127
    • Bachman, E.J.1    Scott, S.W.2    Xin, G.3    Bowman Vance, V.4
  • 27
    • 0028214686 scopus 로고
    • Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3 untranslated region of alfalfa mosaic virus RNA 4
    • F. Houser-Scott, M.L. Baer, K.F. Liem, J.M. Cai, L. Gehrke. Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3 untranslated region of alfalfa mosaic virus RNA 4. J. Virol., 68, 2194 (1994).
    • (1994) J. Virol. , vol.68 , pp. 2194
    • Houser-Scott, F.1    Baer, M.L.2    Liem, K.F.3    Cai, J.M.4    Gehrke, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.