From genetic structure to wetland conservation: A freshwater isopod Paramphisopus palustris (Phreatoicidea: Amphisopidae) from the Swan Coastal Plain, Western Australia

Hydrobiologia

Volumn 589, Issue 1, 2007, Pages 249-263

  Gouws, Gavin ^a   Stewart, Barbara A ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

COI mtDNA; Dune systems; Groundwater; Isolation by distance; P. montanus; P. palustris var. fairbridgei; Persistent founder event

Indexed keywords

DNA; ECOLOGY; GENES; GENETIC ENGINEERING; GROUNDWATER; LAND USE; TAXONOMIES;

DUNE SYSTEMS; PERSISTENT FOUNDER EVENTS; PHYLOGENETIC ANALYSIS; WETLAND CONSERVATION;

BIODIVERSITY;

CONSERVATION PLANNING; CRUSTACEAN; DIVERGENCE; DUNE FIELD; ENZYME ACTIVITY; GENETIC STRUCTURE; HABITAT CONSERVATION; ISOPOD; MITOCHONDRIAL DNA; PHYLOGENETICS; PHYLOGEOGRAPHY; REPRODUCTIVE ISOLATION; SPECIATION (BIOLOGY); SYNTAXONOMY; WETLAND MANAGEMENT;

AUSTRALASIA; AUSTRALIA; SWAN COASTAL PLAIN; WESTERN AUSTRALIA;

AMPHISOPODIDAE; PARAMPHISOPUS; PARAMPHISOPUS PALUSTRIS; PHREATOICIDEA; ZANCLEA;

EID: 34547096231     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-007-0742-2     Document Type: Article

References (65)

1. Akaike, H., 1974. A new look at the statistical model identification. Institute of Electrical and Electronics Engineers Transactions on Automatic Control 19: 716-723.
2. Arnold, J. M., 1990. Perth Wetlands Resource Book (Bulletin 266). Environmental Protection Authority and the Water Authority of Western Australia, Perth.
3. Balla, S. A. & J. A. Davis, 1993. Wetlands of the Swan Coastal Plain, Vol. 5. Managing Perth's wetlands to conserve the aquatic fauna. Water Authority of Western Australia, Leederville, Perth.
4. Bastian, L. V., 1996. Residual soil mineralogy and dune subdivision, Swan Coastal Plain, Western Australia. Australian Journal of Earth Sciences 43: 31-44.
5. Cavalcanti, M. J., 2005. MANTEL for Windows. Test for association between two symmetrical distance matrices with permutation iterations. Version 1.18. Departemento de Vertebrados, Museu Nacional do Rio de Janiero, Brazil.
6. Cheal, F., J. A. Davis & J. E. Growns, 1993. Relationships between macroinvertebates and environmental variables. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 16-18.
7. Chessman, B. C., K. M. Trayler & J. A. Davis, 2002. Family- and species-level biotic indices for macroinvertebrates of wetlands on the Swan Coastal Plain, Western Australia. Marine and Freshwater Research 53: 919-930.
8. Churchill, D. M., 1959. Late Quaternary eustatic changes in the Swan River district. Journal of the Royal Society of Western Australia 41: 53-55.
9. Clarke, J. D. A., 1994. Evolution of the Lefroy and Cowan Palaeodrainage channels, Western Australia. Australian Journal of Earth Sciences 41: 55-68.
10. Clement, M., D. Posada & K. A. Crandall, 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
11. Davis, J. A., J. S. Bradley & J. E. Growns, 1993. General introduction. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 16-18.
12. Davis, J. A. & R. S. Rosich, 1993a. Conclusions and implications for management. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 221-230.
13. Davis, J. A. & R. S. Rosich, 1993b. Executive summary. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 7-15.
14. De Gelas, K. & de Meester L., 2005. Phylogeography of Daphnia magna in Europe. Molecular Ecology 14: 753-764.
15. De Meester, L., A. Gómez, B. Okamura & K. Schwenk, 2002. The Monopolization Hypothesis and the dispersal-gene flow paradox in aquatic organisms. Acta Oecologia 23: 121-135.
16. Dodson, J. R. & M. K. Macphail, 2004. Palynological evidence for aridity events and vegetation changes during the Middle Pliocene, a warm period in Southwestern Australia. Global and Planetary Change 41: 285-307.
17. Excoffier, L., G. Laval & S. Schneider, 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
18. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
19. Excoffier, L., P. Smouse & J. Quattro, 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
20. Folmer, O., M. Black, W. Hoeh, R. Lutz & R. Vrijenhoek, 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
21. Glauert, L., 1924. Contributions to the fauna of Western Australia, no. 4. A freshwater isopod Phreatoicus palustris. n. sp. Journal of the Royal Society of Western Australia 10: 49-57.
22. Gómez, A., G. J. Adcock, D. H. Lunt & G. R. Carvalho, 2002. The interplay between colonization history and gene flow in passively dispersing zooplankton: microsatellite analysis of rotifer resting egg banks. Journal of Evolutionary Biology 15: 158-171.
23. Gouws, G., B. A. Stewart & S. R. Daniels, 2006. Phylogeographic structure of a freshwater crayfish (Decapoda: Parastacidae: Cherax preissii) in south-western Australia. Marine and Freshwater Research 57: 837-848.
24. Gouws, G., B. A. Stewart & C. A. Matthee, 2005. Lack of taxonomic differentiation in an apparently widespread freshwater isopod morphotype (Phreatoicidea: Mesamphisopidae: Mesamphisopus) from South Africa. Molecular Phylogenetics and Evolution 37: 289-305.
25. Growns, J. E., J. A. Davis, F. Cheal & J. S. Bradley, 1993a. Classification of the wetlands using invertebrate data. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 88-156.
26. Growns, J. E., L. G. Schmidt & F. Cheal, 1993b. Site descriptions and general methods. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 19-28.
27. Hasegawa, M., K. Kishino & T. Yano, 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174.
28. Hopper, S. D. & P. Gioia, 2004. The Southwest Australian Floristic Region: evolution and conservation of a global hot spot of biodiversity. Annual Review of Ecology, Evolution and Systematics 35: 623-650.
29. Jarman, S. N., 2004. Amplicon: software for designing PCR primers on aligned DNA sequences. Bioinformatics 20: 1644-1645.
30. Keable, S. J. & G. D. F. Wilson, 2006. New species of Pygolabis Wilson, 2003 (Isopoda, Tainisopidae, Crustacea) from Western Australia. Zootaxa 1116: 1-27.
31. Ketmaier, V., R. Argano & A. Caccone, 2003. Phylogeography and molecular rates of subterranean aquatic stenasellid isopods with a peri-Tyrrhenian distribution. Molecular Ecology 12: 547-555.
32. Kimura, M., 1981. Estimation of evolutionary distances between homologous nucleotide sequences. Proceedings of the National Academy of Sciences of the United States of America 78: 454-458.
33. Knott, B. & S. A. Halse, 1999. Pilbarophreatoicus platyarthricus n.gen., n.sp. (Isopoda: Phreatoicidea: Amphisopididae) from the Pilbara region of Western Australia. Records of the Australian Museum 51: 33-42.
34. Majer, K., 1979a. Wetlands of the Darling System: wetland reserves and their management. Bulletin No. 62. Department of Conservation and Environment, Lesmurdie, Western Australia.
35. Majer, K., 1979b. Wetlands of the Darling System: wetlands in conservation reserves and national parks. Bulletin No. 61. Department of Conservation and Environment, Lesmurdie, Western Australia.
36. Mantel, N., 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27:209-220.
37. McGaughran, A., I. D. Hogg, M. I. Stevens, W. L. Chadderton & M. J. Winterbourn, 2006. Genetic divergence of three freshwater isopod species from southern New Zealand. Journal of Biogeography 33: 23-30.
38. Mitchell, D., K. Williams & A. Desmond, 2003. Swan Coastal Plain 2 (SWA2-Swan Coastal Plain subregion). In May, J. A. & N. L. McKenzie (eds), A Biodiversity Audit of Western Australia's 53 Biogeographical Subregions in 2002. Department of Conservation and Land Management, Kensington, Perth, 606-623.
39. Moritz, C., 1995. Uses of molecular phylogenies for conservation. Philosophical Transactions of the Royal Society of London B 349: 113-118.
40. Moritz, C., 1999. Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas 130: 217-228.
41. Nicholls, G. E., 1924. Phreatoicus lintoni, a new species of freshwater isopod from south-western Australia. Journal of the Royal Society of Western Australia 10: 92-103.
42. Nicholls, G. E., 1926. A description of two new genera and species of Phreatoicidea, with a discussion of the affinities of the members of this family. Journal of the Royal Society of Western Australia 12: 179-210.
43. Nicholls, G. E., 1943. The Phreatoicoidea. Part I. The Amphisopidae. Papers and Proceedings of the Royal Society of Tasmania 1942: 1-145.
44. Nicholls, G. E. & D. F. Milner, 1923. A new genus of fresh-water Isopoda, allied to Phreatoicus. Journal of the Royal Society of Western Australia 10: 23-34.
45. Posada, D., 2004. Collapse: describing haplotypes from sequence alignments. Version 1.2. (http://darwin.uvigo.es).
46. Posada, D. & K. A. Crandall, 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
47. Ramachandran, S., O. Deshpande, C. C. Roseman, N. A. Rosenberg, M. W. Feldman & L. L. Cavalli-Sforza, 2005. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proceedings of the National Academy of Sciences of the United States of America 102: 15942-15947.
48. Rivera, M. A. J., F. G. Howart, S. Taiti & G. K. Roderick, 2002. Evolution in Hawaiian cave-adapted isopods (Oniscidea: Philosciidae): vicariant speciation or adaptive shifts? Molecular Phylogenetics and Evolution 25: 1-9.
49. Schmidt, L. G., J. E. Growns & F. Cheal, 1993. Other factors of environmental significance. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 214-220.
50. Schmidt, L. G. & R. S. Rosich, 1993. Phytoplankton community structure in relation to physical and chemical gradients. In Davis, J. A., R. S. Rosich, J. S. Bradley, J. E. Growns, L. G. Schmidt & F. Cheal (eds), Wetlands of the Swan Coastal Plain, Vol. 6. Wetland classification on the basis of water quality and invertebrate community data. Water Authority of Western Australia, Leederville, Perth, 157-170.
51. Semeniuk, V., 1997. Pleistocene coastal palaeogeography in southwestern Australia-carbonate and quartz sand sedimentation in cuspate forelands, barriers and ribbon shoreline deposits. Journal of Coastal Research 13: 468-489.
52. Sheppard, E. M., 1927. Revision of the family Phreatoicidae (Crustacea), with a description of two new species. Proceedings of the Zoological Society of London 1927: 81-124.
53. Swofford, D. L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates Inc., Sunderland, Massachusetts.
54. Tamura, K., 1992. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C content biases. Molecular Biology and Evolution 9: 678-687.
55. Templeton, A. R., E. Routman & C. A. Phillips, 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782.
56. Unmack, P. J., 2001. Biogeography of Australian freshwater fishes. Journal of Biogeography 28: 1053-1089.
57. Verovnik, R., B. Sket & P. Trontelj, 2004. Phylogeography of subterranean and surface populations of water lice Asellus aquaticus (Crustacea: Isopoda). Molecular Ecology 13: 1519-1532.
58. Walsh, P. S., D. A. Metzger & R. Higuchi, 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10: 506-513.
59. Wang, M. & A. Schreiber, 1999a. Population differentiation in the woodlouse Oniscus asellus in central Europe (Isopoda: Oniscoidea). Journal of Crustacean Biology 19: 301-312.
60. Wang, M. & A. Schreiber, 1999b. Population genetics of the woodlouse Porcellio scaber Latr. (Isopoda: Oniscoidea) in central Europe: passive dispersal and postglacial range expansion. Canadian Journal of Zoology 77: 1337-1347.
61. Wilson, G. D. F. & G. D. Edgecombe, 2003. The Triassic isopod Protamphisopus wianamattensis (Chilton) and comparison with extant taxa (Crustacea, Phreatoicidea). Journal of Paleontology 77: 454-470.
62. Wilson, G. D. F. & E. L. Ho, 1996. Crenoicus Nicholls, 1944 (Crustacea, Isopoda, Phreatoicidea): systematics and biology of a new species from New South Wales. Records of the Australian Museum 48: 7-32.
63. Wilson, G. D. F. & S. J. Keable, 1999. A new genus of phreatoicidean isopod (Crustacea) from the north Kimberley region, Western Australia. Zoological Journal of the Linnean Society 126: 51-79.
64. Wilson, G. D. F. & S. J. Keable, 2002. New genera of Phreatoicidea (Crustacea: Isopoda) from Western Australia. Records of the Australian Museum 54: 41-70.
65. Wright, S., 1943. Isolation by distance. Genetics 28: 114-138.