Phylogeography of Daphnia magna in Europe

Molecular Ecology

Volumn 14, Issue 3, 2005, Pages 753-764

  De Gelas, K ^a   De Meester, L ^a  

^a Lab Aquatic Ecology   (Belgium)

Author keywords

COI; Daphnia magna; Mismatch; Nested clade; Parthenogenesis; Phylogeography

Indexed keywords

CYTOCHROME C OXIDASE;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; DAPHNIA; DEMOGRAPHY; DNA SEQUENCE; EUROPE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION GENETICS; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; DAPHNIA; DEMOGRAPHY; ELECTRON TRANSPORT COMPLEX IV; EUROPE; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

CLADOCERA; DAPHNIA; DAPHNIA MAGNA; SIPHONAPTERA (FLEAS);

EID: 14844300899     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02434.x     Document Type: Article

References (59)

1. Adamowicz SJ, Gregory R, Marinone MC, Hebert PDN (2002) New insights into the distribution of polyploid Daphnia: the Holarctic revisited and Argentina explored. Molecular Ecology, 11, 1209-1217.
2. Avise JC (2000) Phylogeography: The History and Formation of Species, pp. 447. Harvard University Press, Cambridge, MA.
3. Bilton DT, Freeland JR, Okamura B (2001) Dispersal in freshwater invertebrates. Annual Review of Ecology and Systematics, 32, 159-181.
4. Boileau MG, Hebert PDN, Schwartz S (1992) Non-equilibrium gene frequency divergence: persistent founder effects in natural populations. Journal of Evolutionary Ecology, 5, 25-39.
5. Brower AVZ (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences of the United States of America, 91, 6491-6495.
6. Cáceres CE, Hairston NG (1998) Benthic-pelagic coupling in planktonic crustaceans: the role of the benthos. Archivo für Hydrobiologie, 52, 163-174.
7. Carvalho GR (1994) Genetics of aquatic clonal organisms. In: Genetics and Evolution of Aquatic Organisms (ed. Beaumont A), pp. 291-323. Chapman & Hall, London.
8. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
9. Colbourne JK, Crease TJ, Weider LJ, Hebert PDN, Dufresne F, Hobaek A (1998) Phylogenetics and evolution of a circumarctic species complex (Cladocera: Daphnia pulex). Biological Journal of the Linnean Society, 65, 347-365.
10. Cox AJ, Hebert PDN (2001) Colonization, extinction, and phylogeographic patterning in a freshwater crustacean. Molecular Ecology, 10, 371-386.
11. Crease TJ, Lynch M, Spitze K (1990) A hierarchical analysis of population genetic variation in nuclear and mitochondrial genes in Daphnia. Molecular Biology and Evolution, 7, 444-458.
12. De Meester L (1996) Local genetic differentiation and adaptation in freshwater zooplankton populations: patterns and processes. Ecoscience, 3, 385-399.
13. De Meester L, Gomez A, Okamura B, Schwenk K (2002) The monopolization hypothesis and the dispersal-gene flow paradox in aquatic organisms. Acta Oecologica, 23, 121-135.
14. Figuerola J, Green AJ (2002) Dispersal of aquatic organisms by waterbirds: a review of past research and priorities for future studies. Freshwater Biology, 47, 483-494.
15. Figuerola J, Green AJ, Santamaria L (2003) Passive internal transport of aquatic organisms by waterfowl in Doñana, south-west Spain. Global Ecology and Biogeography, 12, 427-436.
16. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
17. Freeland JR, Romualdi C, Okamura B (2000) Gene flow and genetic diversity: a comparison of freshwater bryozoan populations in Europe and North America. Heredity, 85, 498-508.
18. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
19. Gomez A, Carvalho GR, Lunt DH (2000) Phylogeography and regional endemism of a passively dispersing zooplankter: mitochondrial DNA variation in rotifer resting egg banks. Proceedings of the Royal Society of London Series B, Biological Sciences, 267, 2189-2197.
20. Harpending HC (1994) Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
21. Hebert PDN (1974a) Enzyme variability in natural populations of Daphnia magna I. Population structure in East Anglia. Evolution, 28, 546-556.
22. Hebert PDN (1974b) Enzyme variability in natural populations of Daphnia magna. II. Genotypic frequencies in permanent populations. Genetics, 77, 323-334.
23. Hebert PDN (1974c) Enzyme variability in natural populations of Daphnia magna III. Genotypic frequencies in intermittent populations. Genetics, 77, 335-341.
24. Hebert PDN (1974d) Ecological differences between genotypes in a natural population of Daphnia magna. Heredity, 33, 327-337.
25. Hebert PDN (1978) The population biology of Daphnia (Crustacea, Daphnidae). Biology Reviews, 53, 387-426.
26. Hebert PDN (1987) Genetics of Daphnia. In: The Biology of Daphnia. (eds Peters RH, De Bernardi R), pp. 439-460. Memorie dell'Istituto Italiano di Idrobiologia.
27. Hebert PDN, Cristescu MA (2002) Genetic perspectives on invasions: the case of the Cladocera. Canadian Journal of Fisheries and Aquatic Sciences, 59, 1229-1234.
28. Hebert PDN, Finston TL (1996) Genetic differentiation in Daphnia obtusa: a continental perspective. Freshwater Biology, 35, 311-321.
29. Hebert PDN, Remigio EA, Colbourne JK, Taylor DJ, Wilson CC (2002) Accelerated molecular evolution in halophilic crustaceans. Evolution, 56, 909-926.
30. Hebert PDN, Witt JDS, Adamowics SJ (2003) Phylogeographic patterning in Daphnia ambigua: regional divergence and intercontinental cohesion. Limnology and Oceanography, 48, 261-268.
31. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
32. Knowles LL, Maddison WP (2002) Statistical phylogeography. Molecular Ecology, 11, 2623-2635.
33. Knowlton N, Weight LA (1998) New dates and new rates of divergence across the Isthmus of Panama. Proceedings of the Royal Society of London Series B, Biological Sciences, 265, 2257-2263.
34. Korpelainen H (1984) Genetic differentiation of Daphnia magna populations. Hereditas, 101, 209-216.
35. Kuhner MK, Yamato J, Felsenstein J (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429-434.
36. Lynch M, Pfrender M, Spitze K et al. (1999) The quantitative and molecular genetic architecture of a subdivided species. Evolution, 53, 100-110.
37. Penton EH, Hebert PDN, Crease TJ (2004) Mitochondrial DNA variation in North American populations of Daphnia obtusa: continentalism or cryptic endemism? Molecular Ecology, 13, 97-107.
38. Petit JR, Jouzel J, Raynaud D et al. (1999) Climate and atmospheric history of the past 420 000 years from the Vostok ice core, Antarctica. Nature, 399, 429-436.
39. Posada D, Crandall AK, Templeton AR (2000) GEODIS: a program for the cladistic nested analysis of the geographic distribution of genetic haplotypes. Trends in Ecology and Evolution, 16, 37-45.
40. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
41. Schneider S, Excoffier L (1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics, 152, 1079-1089.
42. Schneider S, Roesli D, Excoffier L (2000) ARLEQUIN. A Software Program for Population Genetic Data Analysis. University of Geneva, Geneva, Switzerland.
43. Schubart CD, Diesel R, Hedges SB (1998) Rapid evolution to terrestrial life in Jamaican crabs. Nature, 393, 363-365.
44. Schwenk K, Posada D, Hebert PDN (2000) Molecular systematics of European Hyalodaphnia: the role of contemporary hybridization in ancient species. Proceedings of the Royal Society of London Series B, Biological Sciences, 267, 1833-1842.
45. Slatkin M, Hudson RR (1991) Pairwise comparison of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555-562.
46. Straughan DJ, Lehman N (2000) Genetic differentiation among Oregon lake populations of the Daphnia pulex species complex. Journal of Heredity, 91, 8-17.
47. Taberlet P, Famagalli L, Wust-Saucy A, Cosson J (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453-464.
48. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
49. Taylor DJ, Finston TL, Hebert PDN (1998) Biogeography of a widespread freshwater crustacean: pseudocongruence and cryptic endemism in the North American Daphnia leavis complex. Evolution, 52, 1648-1670.
50. Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381-397.
51. Templeton AR (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789-809.
52. Templeton AR, Boerwinkel E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. I. Basic theory and an analysis of alcohol-dehydrogenase activity in Drosophila. Genetics, 117, 343-351.
53. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-669.
54. Templeton AR, Routman E, Phillips C (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 53, 591-608.
55. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. IV. Nested analysis with cladogram uncertainty recombination. Genetics, 134, 659-669.
56. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876-4882.
57. Vanoverbeke J, De Meester L (1997) Among-populational genetic differentiation in the cyclical parthenogen Daphnia magna (Crustacea, Anomopoda) and its relation to geographic distance and clonal diversity. Hydrobiologia, 360, 135-142.
58. Weider LJ, Hobaek A, Colbourne JK, Crease TJ, Dufresne F, Hebert PDN (1999) Holarctic phylogeography of an asexual species complex I. Mitochondrial DNA variation in Arctic Daphnia. Evolution, 53, 777-792.
59. Young JPW (1979) Enzyme polymorphism and cyclical parthenogenesis in Daphnia magna I: selection and clonal diversity. Genetics, 92, 953-970.