-
1
-
-
0029430359
-
Microparallelism and high performance protein matching
-
in San Diego, CA
-
Alpern, B., Carter, L., and Gatlin, K.S. (1995). Microparallelism and high performance protein matching, in Proceedings of the 1995 ACM/IEEE Supercomputing Conference, San Diego, CA.
-
(1995)
Proceedings of the 1995 ACM/IEEE Supercomputing Conference
-
-
Alpern, B.1
Carter, L.2
Gatlin, K.S.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lip-man, J. (1990). Basic local alignment search tool, Journal of Molecular Biology, 251: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.251
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lip-man, J.5
-
3
-
-
33749079198
-
Bioperf: A benchmark suite to evaluate high-performance computer architecture on bioinformatics
-
in Austin, TX
-
Bader, D., Li, Y., Li, T., and Sachdeva, V. (2005). Bioperf: A benchmark suite to evaluate high-performance computer architecture on bioinformatics, in Proceedings of IEEE International Symposium on Workload Characterization, Austin, TX.
-
(2005)
Proceedings of IEEE International Symposium on Workload Characterization
-
-
Bader, D.1
Li, Y.2
Li, T.3
Sachdeva, V.4
-
4
-
-
0031594023
-
Memory system characterization of commercial workloads
-
in Barcelona, Spain
-
Barroso, L. and Gharachorloo, K. (1998). Memory system characterization of commercial workloads, in 25th International Symposium on Computer Architecture (ISCA'98), pp. 3-14, Barcelona, Spain.
-
(1998)
25th International Symposium on Computer Architecture (ISCA'98)
, pp. 3-14
-
-
Barroso, L.1
Gharachorloo, K.2
-
5
-
-
33746308417
-
-
Technical Report, Silicon Graphics Inc White Paper
-
Camp, N., Cofer, H., and Gomperts, R. (1998). High-throughput Blast, Technical Report, Silicon Graphics Inc White Paper.
-
(1998)
High-throughput Blast
-
-
Camp, N.1
Cofer, H.2
Gomperts, R.3
-
6
-
-
20744452904
-
Self adapting linear algebra algorithms and software
-
Demmel, J., Dongarra, J., Eijkhout, V., Fuentes, E., Petitet, A., Vuduc, R., Whaley, R.C., and Yelick, K. (2005). Self adapting linear algebra algorithms and software, Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation, 93(2): 293-312.
-
(2005)
Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation
, vol.93
, Issue.2
, pp. 293-312
-
-
Demmel, J.1
Dongarra, J.2
Eijkhout, V.3
Fuentes, E.4
Petitet, A.5
Vuduc, R.6
Whaley, R.C.7
Yelick, K.8
-
7
-
-
20744449792
-
The design and implementation of FFTW3
-
Frigo, M. and Johnson, S.G. (2005). The design and implementation of FFTW3, Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation, 93(2): 216-231.
-
(2005)
Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation
, vol.93
, Issue.2
, pp. 216-231
-
-
Frigo, M.1
Johnson, S.G.2
-
9
-
-
0004137004
-
-
Cambridge University Press, Cambridge, UK
-
Gusfield, D. (2001). Algorithms on strings, trees, and sequences: Computer science and computational biology, Cambridge University Press, Cambridge, UK.
-
(2001)
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology
-
-
Gusfield, D.1
-
11
-
-
1542501019
-
Sparsity: Optimization framework for sparse matrix kernels
-
Im, E.J., Yelick, K., and Vuduc, R. (2004). Sparsity: Optimization framework for sparse matrix kernels, International Journal of High Performance Computing Applications, 18 (1): 135-158.
-
(2004)
International Journal of High Performance Computing Applications
, vol.18
, Issue.1
, pp. 135-158
-
-
Im, E.J.1
Yelick, K.2
Vuduc, R.3
-
12
-
-
0031594022
-
Execution characteristics of desktop applications on Windows NT
-
in Barcelona, Spain
-
Lee, D., Crowley, P., Baer, J., Anderson, T., and Bershad, B. (1998). Execution characteristics of desktop applications on Windows NT, in 25th Annual International Symposium on Computer Architecture (ISCA'98), pp. 27-38, Barcelona, Spain.
-
(1998)
25th Annual International Symposium on Computer Architecture (ISCA'98)
, pp. 27-38
-
-
Lee, D.1
Crowley, P.2
Baer, J.3
Anderson, T.4
Bershad, B.5
-
13
-
-
84949653778
-
Automatic performance tuning for the UHFFT library
-
in Lecture Notes in Computer Science Berlin: Springer
-
Mirkovie, D. and Johnsson, S.L. (2001). Automatic performance tuning for the UHFFT library, in Proceedings of International Conference on Computational Science, Lecture Notes in Computer Science, vol. 2073, pp. 71-80, Berlin: Springer.
-
(2001)
Proceedings of International Conference on Computational Science
, vol.2073
, pp. 71-80
-
-
Mirkovie, D.1
Johnsson, S.L.2
-
14
-
-
19344368072
-
Spiral: Code generation for DSP transforms
-
Puschel, M., Moura, J.M.F., Johnson, J., Padua, D., Veloso, M., Singer, B., Xiong, J., Franchetti, F., Gacic, A., Voronenko, Y., Chen, K., Johnson, R.W., and Rizzolo, N. (2005). Spiral: Code generation for DSP transforms, in Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation, 93(2): 232-275.
-
(2005)
Proceedings of the IEEE, Special Issue on Program Generation, Optimization, and Adaptation
, vol.93
, Issue.2
, pp. 232-275
-
-
Puschel, M.1
Moura, J.M.F.2
Johnson, J.3
Padua, D.4
Veloso, M.5
Singer, B.6
Xiong, J.7
Franchetti, F.8
Gacic, A.9
Voronenko, Y.10
Chen, K.11
Johnson, R.W.12
Rizzolo, N.13
-
15
-
-
0033743209
-
Six-fold speed-up of Smith- Waterman sequence database searches using parallel processing on common microprocessors
-
Rognes, T. and Seeberg, E. (2000). Six-fold speed-up of Smith- Waterman sequence database searches using parallel processing on common microprocessors, Bioinformatics, 16 (8): 699-706.
-
(2000)
Bioinformatics
, vol.16
, Issue.8
, pp. 699-706
-
-
Rognes, T.1
Seeberg, E.2
-
16
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T. and Waterman, M. (1981). Identification of common molecular subsequences, Journal of Molecular Biology, 147 (1): 195-197.
-
(1981)
Journal of Molecular Biology
, vol.147
, Issue.1
, pp. 195-197
-
-
Smith, T.1
Waterman, M.2
-
17
-
-
0027968068
-
Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). Clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice, Nucleic Acids Research, 22: 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
18
-
-
0030935244
-
Using video-oriented instructions to speed up sequence comparison
-
Wozniak, A. (1996). Using video-oriented instructions to speed up sequence comparison, Bioinformatics, 13 (2): 145-150.
-
(1996)
Bioinformatics
, vol.13
, Issue.2
, pp. 145-150
-
-
Wozniak, A.1
-
19
-
-
0742286174
-
An analysis of cache performance of multimedia applications
-
Xu, Z., Sohum, S., Min, R., and Hu, Y. (2004). An analysis of cache performance of multimedia applications, IEEE Transactions on Computers, 53 (1): 23-38.
-
(2004)
IEEE Transactions on Computers
, vol.53
, Issue.1
, pp. 23-38
-
-
Xu, Z.1
Sohum, S.2
Min, R.3
Hu, Y.4
-
20
-
-
0034053725
-
A greedy algorithm for aligning DNA sequence
-
Zhang, Z., Schwartz, S., Wagner, L., and Miller, W. (2000). A greedy algorithm for aligning DNA sequence, Journal of Computational Biology, 7 (12): 203-214.
-
(2000)
Journal of Computational Biology
, vol.7
, Issue.12
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
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