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Volumn 153, Issue 7, 2007, Pages 2180-2189

Secondary structures as predictors of mutation potential in the lacZ gene of Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; SINGLE STRANDED DNA;

EID: 34447530884     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/005470-0     Document Type: Article
Times cited : (10)

References (45)
  • 1
    • 0035871625 scopus 로고    scopus 로고
    • Increased transcription levels induce higher mutation rates in a hypermutating cell line
    • Bachl, J., Carlson, C., Gray-Schopfer, V., Dessing, M. & Olsson, C. (2001). Increased transcription levels induce higher mutation rates in a hypermutating cell line. J Immunol 166, 5051-5057.
    • (2001) J Immunol , vol.166 , pp. 5051-5057
    • Bachl, J.1    Carlson, C.2    Gray-Schopfer, V.3    Dessing, M.4    Olsson, C.5
  • 2
    • 0023430342 scopus 로고
    • Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
    • Balke, V. L. & Gralla, J. D. (1987). Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J Bacteriol 169, 4499-4506.
    • (1987) J Bacteriol , vol.169 , pp. 4499-4506
    • Balke, V.L.1    Gralla, J.D.2
  • 3
    • 0015017971 scopus 로고
    • Differential mutation of the β-galactosidase gene of Escherichia coli
    • Brock, R. D. (1971). Differential mutation of the β-galactosidase gene of Escherichia coli. Mutat Res 11, 181-186.
    • (1971) Mutat Res , vol.11 , pp. 181-186
    • Brock, R.D.1
  • 4
    • 0026094779 scopus 로고
    • Adaptive reversion of a frameshift mutation in Escherichia coli
    • Cairns, J. & Foster, P. L. (1991). Adaptive reversion of a frameshift mutation in Escherichia coli. Genetics 128, 695-701.
    • (1991) Genetics , vol.128 , pp. 695-701
    • Cairns, J.1    Foster, P.L.2
  • 5
    • 0023058299 scopus 로고
    • Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease
    • Colleaux, L., d'Auriol, L., Betermier, M., Cottarel, G., Jacquier, A., Galibert, F. & Dujon, B. (1986). Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease. Cell 44, 521-533.
    • (1986) Cell , vol.44 , pp. 521-533
    • Colleaux, L.1    d'Auriol, L.2    Betermier, M.3    Cottarel, G.4    Jacquier, A.5    Galibert, F.6    Dujon, B.7
  • 6
    • 0029065571 scopus 로고
    • Association of increased spontaneous mutation rates with high levels of transcription in yeast
    • Datta, A. & Jinks-Robertson, S. (1995). Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science 268, 1616-1619.
    • (1995) Science , vol.268 , pp. 1616-1619
    • Datta, A.1    Jinks-Robertson, S.2
  • 7
    • 0026440765 scopus 로고
    • Transcriptionally driven cruciform formation in vivo
    • Dayn, A., Malkhosyan, S. & Mirkin, S. M. (1992). Transcriptionally driven cruciform formation in vivo. Nucleic Acids Res 20, 5991-5997.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5991-5997
    • Dayn, A.1    Malkhosyan, S.2    Mirkin, S.M.3
  • 8
    • 0024024835 scopus 로고
    • DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression
    • Dorman, C. J., Barr, G. C., Bhriain, N. N. & Higgins, C. F. (1988). DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression. J Bacteriol 170, 2816-2826.
    • (1988) J Bacteriol , vol.170 , pp. 2816-2826
    • Dorman, C.J.1    Barr, G.C.2    Bhriain, N.N.3    Higgins, C.F.4
  • 9
    • 0032127810 scopus 로고    scopus 로고
    • Somatic hypermutation in the heavy chain locus correlates with transcription
    • Fukita, Y., Jacobs, H. & Rajewsky, K. (1998). Somatic hypermutation in the heavy chain locus correlates with transcription. Immunity 9, 105-114.
    • (1998) Immunity , vol.9 , pp. 105-114
    • Fukita, Y.1    Jacobs, H.2    Rajewsky, K.3
  • 10
    • 0004738888 scopus 로고
    • Regulation of bacterial DNA supercoiling: Plasmid linking numbers vary with growth temperature
    • Goldstein, E. & Drlica, K. (1984). Regulation of bacterial DNA supercoiling: Plasmid linking numbers vary with growth temperature. Proc Natl Acad Sci U S A 81, 4046-4050.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 4046-4050
    • Goldstein, E.1    Drlica, K.2
  • 11
    • 0015057861 scopus 로고
    • Effect of gene induction on the rate of mutagenesis by ICR- 191 in Escherichia coli
    • Herman, R. K. & Dworkin, N. B. (1971). Effect of gene induction on the rate of mutagenesis by ICR- 191 in Escherichia coli. J Bacteriol 106, 543-550.
    • (1971) J Bacteriol , vol.106 , pp. 543-550
    • Herman, R.K.1    Dworkin, N.B.2
  • 12
    • 0037633360 scopus 로고    scopus 로고
    • Gene replacement without selection: Regulated suppression of amber mutations in Escherichia coli
    • Herring, C. D., Glasner, J. D. & Blattner, F. R. (2003). Gene replacement without selection: Regulated suppression of amber mutations in Escherichia coli. Gene 311, 153-163.
    • (2003) Gene , vol.311 , pp. 153-163
    • Herring, C.D.1    Glasner, J.D.2    Blattner, F.R.3
  • 13
    • 0023833060 scopus 로고
    • A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli
    • Higgins, C. F., Dorman, C. J., Stirling, D. A., Waddell, L, Booth, I. R., May, G. & Bremer, E (1988). A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell 52, 569-584.
    • (1988) Cell , vol.52 , pp. 569-584
    • Higgins, C.F.1    Dorman, C.J.2    Stirling, D.A.3    Waddell, L.4    Booth, I.R.5    May, G.6    Bremer, E.7
  • 14
    • 0027382142 scopus 로고
    • The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium
    • Karem, K. & Foster, J. W. (1993). The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium. Mol Microbiol 10, 75-86.
    • (1993) Mol Microbiol , vol.10 , pp. 75-86
    • Karem, K.1    Foster, J.W.2
  • 16
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T. (1993). Instability and decay of the primary structure of DNA. Nature 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 17
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu, L. F. & Wang, J. C. (1987). Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84, 7024-7027.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 18
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • Luria, S. E. & Delbrück, M. (1943). Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28, 491-511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.E.1    Delbrück, M.2
  • 19
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • Markham, N. R. & Zuker, M. (2005). DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res 33, W577-W581.
    • (2005) Nucleic Acids Res , vol.33
    • Markham, N.R.1    Zuker, M.2
  • 20
    • 0027367175 scopus 로고
    • Chromosomal supercoiling in Escherichia coli
    • Miller, W. G. & Simons, R. W. (1993). Chromosomal supercoiling in Escherichia coli. Mol Microbiol 10, 675-684.
    • (1993) Mol Microbiol , vol.10 , pp. 675-684
    • Miller, W.G.1    Simons, R.W.2
  • 21
    • 0027999001 scopus 로고
    • Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii
    • Mojica, F. J., Charbonnier, F., Juez, G., Rodriguez-Valera, F. & Forterre, P. (1994). Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii. J Bacteriol 176, 4966-4973.
    • (1994) J Bacteriol , vol.176 , pp. 4966-4973
    • Mojica, F.J.1    Charbonnier, F.2    Juez, G.3    Rodriguez-Valera, F.4    Forterre, P.5
  • 22
    • 0035185382 scopus 로고    scopus 로고
    • DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths
    • Opel, M. L. & Hatfield, G. W. (2001). DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths. Mol Microbiol 39, 191-198.
    • (2001) Mol Microbiol , vol.39 , pp. 191-198
    • Opel, M.L.1    Hatfield, G.W.2
  • 23
    • 0029762817 scopus 로고    scopus 로고
    • Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication
    • Pearson, C. E., Zorbas, H., Price, G. B. & Zannis-Hadjopoulos, M. (1996). Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication. J Cell Biochem 63, 1-22.
    • (1996) J Cell Biochem , vol.63 , pp. 1-22
    • Pearson, C.E.1    Zorbas, H.2    Price, G.B.3    Zannis-Hadjopoulos, M.4
  • 24
    • 3142774839 scopus 로고    scopus 로고
    • Topological domain structure of the Escherichia coli chromosome
    • Postow, L., Hardy, C. D., Arsuaga, J. & Cozzareill, N. R. (2004). Topological domain structure of the Escherichia coli chromosome. Genes Dev 18, 1766-1779.
    • (2004) Genes Dev , vol.18 , pp. 1766-1779
    • Postow, L.1    Hardy, C.D.2    Arsuaga, J.3    Cozzareill, N.R.4
  • 25
    • 2642672756 scopus 로고
    • Topoisomerase I mutants: The gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling
    • Pruss, G. J. & Drlica, K (1986). Topoisomerase I mutants: The gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling. Proc Natl Acad Sci U S A 83, 8952-8956.
    • (1986) Proc Natl Acad Sci U S A , vol.83 , pp. 8952-8956
    • Pruss, G.J.1    Drlica, K.2
  • 26
    • 0020426111 scopus 로고
    • Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes
    • Pruss, G. J., Manes, S. H. & Drlica, K (1982). Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes. Cell 31, 35-42.
    • (1982) Cell , vol.31 , pp. 35-42
    • Pruss, G.J.1    Manes, S.H.2    Drlica, K.3
  • 27
    • 2942614909 scopus 로고    scopus 로고
    • Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs
    • Reimers, J. M., Schmidt K H., Longacre, A., Reschke, D. K. & Wright B. E. (2004). Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs. Microbiology 150, 1457-1466.
    • (2004) Microbiology , vol.150 , pp. 1457-1466
    • Reimers, J.M.1    Schmidt, K.H.2    Longacre, A.3    Reschke, D.K.4    Wright, B.E.5
  • 28
    • 0019996140 scopus 로고
    • Model for the participation of quasi-palindromic DNA sequences in frameshift mutation
    • Ripley, L. S. (1982). Model for the participation of quasi-palindromic DNA sequences in frameshift mutation. Proc Natl Acad Sci U S A 79, 4128-4132.
    • (1982) Proc Natl Acad Sci U S A , vol.79 , pp. 4128-4132
    • Ripley, L.S.1
  • 29
    • 0020300667 scopus 로고
    • Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation
    • Ripley, L. S. & Glickman, B. W. (1983). Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation. Cold Spring Harb Symp Quant Biol 47, 851-861.
    • (1983) Cold Spring Harb Symp Quant Biol , vol.47 , pp. 851-861
    • Ripley, L.S.1    Glickman, B.W.2
  • 30
    • 0032775768 scopus 로고    scopus 로고
    • Is there a link between mutation rates and the stringent response in Bacillus subtilis?
    • Rudner, R., Murray, A. & Huda, N. (1999). Is there a link between mutation rates and the stringent response in Bacillus subtilis? Ann N Y Acad Sci 870, 418-422.
    • (1999) Ann N Y Acad Sci , vol.870 , pp. 418-422
    • Rudner, R.1    Murray, A.2    Huda, N.3
  • 31
    • 33745256707 scopus 로고    scopus 로고
    • The effect of promoter strength, supercoiling and secondary structure on mutation rates in Escherichia coli
    • Schmidt, K H., Reimers, J. M. & Wright B. E. (2006). The effect of promoter strength, supercoiling and secondary structure on mutation rates in Escherichia coli. Mol Microbiol 60, 1251-1261.
    • (2006) Mol Microbiol , vol.60 , pp. 1251-1261
    • Schmidt, K.H.1    Reimers, J.M.2    Wright, B.E.3
  • 32
    • 0343240577 scopus 로고
    • Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
    • Sinden, R. R. & Pettijohn, D. E. (1981). Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc Natl Acad Sci U S A 78, 224-228.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 224-228
    • Sinden, R.R.1    Pettijohn, D.E.2
  • 34
    • 0025005373 scopus 로고
    • A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro
    • Theissen, G., Pardon, B. & Wagner, R. (1990). A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro. Anal Biochem 189, 254-261.
    • (1990) Anal Biochem , vol.189 , pp. 254-261
    • Theissen, G.1    Pardon, B.2    Wagner, R.3
  • 35
    • 3042615152 scopus 로고    scopus 로고
    • A new approach to 'megaprimer' polymerase chain reaction mutagenesis without an intermediate gel purification step
    • Tyagi, R., Lai, R. & Duggleby, R. G. (2004). A new approach to 'megaprimer' polymerase chain reaction mutagenesis without an intermediate gel purification step. BMC Biotechnol 4, 2.
    • (2004) BMC Biotechnol , vol.4 , pp. 2
    • Tyagi, R.1    Lai, R.2    Duggleby, R.G.3
  • 36
    • 0034703487 scopus 로고    scopus 로고
    • A novel mutational hotspot in a natural quasipalindrome in Escherichia coli
    • Viswanathan, M., Lacirignola, J. J., Hurley, R. L & Lovett, S. T. (2000). A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. J Mol Biol 302, 553-564.
    • (2000) J Mol Biol , vol.302 , pp. 553-564
    • Viswanathan, M.1    Lacirignola, J.J.2    Hurley, R.L.3    Lovett, S.T.4
  • 37
    • 0023221993 scopus 로고
    • Repair of single-stranded loops in heteroduplex DNA transfected into mammalian cells
    • Weiss, U. & Wilson, J. H. (1987). Repair of single-stranded loops in heteroduplex DNA transfected into mammalian cells. Proc Natl Acad Sci U S A 84, 1619-1623.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 1619-1623
    • Weiss, U.1    Wilson, J.H.2
  • 38
    • 0030051046 scopus 로고    scopus 로고
    • The effect of the stringent response on mutation rates in Escherichia coli K-12
    • Wright B. E. (1996). The effect of the stringent response on mutation rates in Escherichia coli K-12. Mol Microbiol 19, 213-219.
    • (1996) Mol Microbiol , vol.19 , pp. 213-219
    • Wright, B.E.1
  • 39
    • 0034032750 scopus 로고    scopus 로고
    • A biochemical mechanism for nonrandom mutations and evolution
    • Wright, B. E. (2000). A biochemical mechanism for nonrandom mutations and evolution. J Bacteriol 182, 2993-3001.
    • (2000) J Bacteriol , vol.182 , pp. 2993-3001
    • Wright, B.E.1
  • 40
    • 2442479591 scopus 로고    scopus 로고
    • Stress-directed adaptive mutations and evolution
    • Wright, B. E. (2004). Stress-directed adaptive mutations and evolution. Mol Microbiol 52, 643-650.
    • (2004) Mol Microbiol , vol.52 , pp. 643-650
    • Wright, B.E.1
  • 41
    • 0033608998 scopus 로고    scopus 로고
    • Hypermutation in derepressed operons of Escherichia coli K- 12
    • Wright B. E., Longacre, A. & Reimers, J. M. (1999). Hypermutation in derepressed operons of Escherichia coli K- 12. Proc Natl Acad Sci U S A 96, 5089-5094.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 5089-5094
    • Wright, B.E.1    Longacre, A.2    Reimers, J.M.3
  • 42
    • 0037108843 scopus 로고    scopus 로고
    • Hypermutable bases in the p53 cancer gene are at vulnerable positions in DNA secondary structures
    • Wright, B. E, Reimers, I M., Schmidt K H. & Reschke, D. K. (2002). Hypermutable bases in the p53 cancer gene are at vulnerable positions in DNA secondary structures. Cancer Res 62, 5641-5644.
    • (2002) Cancer Res , vol.62 , pp. 5641-5644
    • Wright, B.E.1    Reimers, I.M.2    Schmidt, K.H.3    Reschke, D.K.4
  • 43
    • 0038011173 scopus 로고    scopus 로고
    • Predicting mutation frequencies in stem-loop structures of derepressed genes: Implications for evolution
    • Wright, B. E, Reschke, D. K., Schmidt, K. H, Reimers, J. M. & Knight, W. (2003). Predicting mutation frequencies in stem-loop structures of derepressed genes: Implications for evolution. Mol Microbiol 48, 429-441.
    • (2003) Mol Microbiol , vol.48 , pp. 429-441
    • Wright, B.E.1    Reschke, D.K.2    Schmidt, K.H.3    Reimers, J.M.4    Knight, W.5
  • 44
    • 2442425574 scopus 로고    scopus 로고
    • Mechanisms by which transcription can regulate somatic hypermutation
    • Wright, B. E., Schmidt K H. & Minnick M. F. (2004). Mechanisms by which transcription can regulate somatic hypermutation. Genes Immun 5, 176-182.
    • (2004) Genes Immun , vol.5 , pp. 176-182
    • Wright, B.E.1    Schmidt, K.H.2    Minnick, M.F.3
  • 45
    • 0025870925 scopus 로고
    • Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells
    • Zheng, G. X, Kochel, T., Hoepfner, R. W., Timmons, S. E & Sinden, R. R. (1991). Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells. J Mol Biol 221, 107-122.
    • (1991) J Mol Biol , vol.221 , pp. 107-122
    • Zheng, G.X.1    Kochel, T.2    Hoepfner, R.W.3    Timmons, S.E.4    Sinden, R.R.5


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