-
1
-
-
0035871625
-
Increased transcription levels induce higher mutation rates in a hypermutating cell line
-
Bachl, J., Carlson, C., Gray-Schopfer, V., Dessing, M. & Olsson, C. (2001). Increased transcription levels induce higher mutation rates in a hypermutating cell line. J Immunol 166, 5051-5057.
-
(2001)
J Immunol
, vol.166
, pp. 5051-5057
-
-
Bachl, J.1
Carlson, C.2
Gray-Schopfer, V.3
Dessing, M.4
Olsson, C.5
-
2
-
-
0023430342
-
Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
-
Balke, V. L. & Gralla, J. D. (1987). Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J Bacteriol 169, 4499-4506.
-
(1987)
J Bacteriol
, vol.169
, pp. 4499-4506
-
-
Balke, V.L.1
Gralla, J.D.2
-
3
-
-
0015017971
-
Differential mutation of the β-galactosidase gene of Escherichia coli
-
Brock, R. D. (1971). Differential mutation of the β-galactosidase gene of Escherichia coli. Mutat Res 11, 181-186.
-
(1971)
Mutat Res
, vol.11
, pp. 181-186
-
-
Brock, R.D.1
-
4
-
-
0026094779
-
Adaptive reversion of a frameshift mutation in Escherichia coli
-
Cairns, J. & Foster, P. L. (1991). Adaptive reversion of a frameshift mutation in Escherichia coli. Genetics 128, 695-701.
-
(1991)
Genetics
, vol.128
, pp. 695-701
-
-
Cairns, J.1
Foster, P.L.2
-
5
-
-
0023058299
-
Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease
-
Colleaux, L., d'Auriol, L., Betermier, M., Cottarel, G., Jacquier, A., Galibert, F. & Dujon, B. (1986). Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease. Cell 44, 521-533.
-
(1986)
Cell
, vol.44
, pp. 521-533
-
-
Colleaux, L.1
d'Auriol, L.2
Betermier, M.3
Cottarel, G.4
Jacquier, A.5
Galibert, F.6
Dujon, B.7
-
6
-
-
0029065571
-
Association of increased spontaneous mutation rates with high levels of transcription in yeast
-
Datta, A. & Jinks-Robertson, S. (1995). Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science 268, 1616-1619.
-
(1995)
Science
, vol.268
, pp. 1616-1619
-
-
Datta, A.1
Jinks-Robertson, S.2
-
7
-
-
0026440765
-
Transcriptionally driven cruciform formation in vivo
-
Dayn, A., Malkhosyan, S. & Mirkin, S. M. (1992). Transcriptionally driven cruciform formation in vivo. Nucleic Acids Res 20, 5991-5997.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5991-5997
-
-
Dayn, A.1
Malkhosyan, S.2
Mirkin, S.M.3
-
8
-
-
0024024835
-
DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression
-
Dorman, C. J., Barr, G. C., Bhriain, N. N. & Higgins, C. F. (1988). DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression. J Bacteriol 170, 2816-2826.
-
(1988)
J Bacteriol
, vol.170
, pp. 2816-2826
-
-
Dorman, C.J.1
Barr, G.C.2
Bhriain, N.N.3
Higgins, C.F.4
-
9
-
-
0032127810
-
Somatic hypermutation in the heavy chain locus correlates with transcription
-
Fukita, Y., Jacobs, H. & Rajewsky, K. (1998). Somatic hypermutation in the heavy chain locus correlates with transcription. Immunity 9, 105-114.
-
(1998)
Immunity
, vol.9
, pp. 105-114
-
-
Fukita, Y.1
Jacobs, H.2
Rajewsky, K.3
-
10
-
-
0004738888
-
Regulation of bacterial DNA supercoiling: Plasmid linking numbers vary with growth temperature
-
Goldstein, E. & Drlica, K. (1984). Regulation of bacterial DNA supercoiling: Plasmid linking numbers vary with growth temperature. Proc Natl Acad Sci U S A 81, 4046-4050.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 4046-4050
-
-
Goldstein, E.1
Drlica, K.2
-
11
-
-
0015057861
-
Effect of gene induction on the rate of mutagenesis by ICR- 191 in Escherichia coli
-
Herman, R. K. & Dworkin, N. B. (1971). Effect of gene induction on the rate of mutagenesis by ICR- 191 in Escherichia coli. J Bacteriol 106, 543-550.
-
(1971)
J Bacteriol
, vol.106
, pp. 543-550
-
-
Herman, R.K.1
Dworkin, N.B.2
-
12
-
-
0037633360
-
Gene replacement without selection: Regulated suppression of amber mutations in Escherichia coli
-
Herring, C. D., Glasner, J. D. & Blattner, F. R. (2003). Gene replacement without selection: Regulated suppression of amber mutations in Escherichia coli. Gene 311, 153-163.
-
(2003)
Gene
, vol.311
, pp. 153-163
-
-
Herring, C.D.1
Glasner, J.D.2
Blattner, F.R.3
-
13
-
-
0023833060
-
A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli
-
Higgins, C. F., Dorman, C. J., Stirling, D. A., Waddell, L, Booth, I. R., May, G. & Bremer, E (1988). A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell 52, 569-584.
-
(1988)
Cell
, vol.52
, pp. 569-584
-
-
Higgins, C.F.1
Dorman, C.J.2
Stirling, D.A.3
Waddell, L.4
Booth, I.R.5
May, G.6
Bremer, E.7
-
14
-
-
0027382142
-
The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium
-
Karem, K. & Foster, J. W. (1993). The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium. Mol Microbiol 10, 75-86.
-
(1993)
Mol Microbiol
, vol.10
, pp. 75-86
-
-
Karem, K.1
Foster, J.W.2
-
15
-
-
0033536708
-
Large-scale effects of transcriptional DNA supercoiling in vivo
-
Krasilnikov, A. S., Podtelezhnikov, A., Vologodskii, A. & Mirkin, S. M. (1999). Large-scale effects of transcriptional DNA supercoiling in vivo. J Mol Biol 292, 1149-1160.
-
(1999)
J Mol Biol
, vol.292
, pp. 1149-1160
-
-
Krasilnikov, A.S.1
Podtelezhnikov, A.2
Vologodskii, A.3
Mirkin, S.M.4
-
16
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl, T. (1993). Instability and decay of the primary structure of DNA. Nature 362, 709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
17
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L. F. & Wang, J. C. (1987). Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84, 7024-7027.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
18
-
-
0001641514
-
Mutations of bacteria from virus sensitivity to virus resistance
-
Luria, S. E. & Delbrück, M. (1943). Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28, 491-511.
-
(1943)
Genetics
, vol.28
, pp. 491-511
-
-
Luria, S.E.1
Delbrück, M.2
-
19
-
-
23144440350
-
DINAMelt web server for nucleic acid melting prediction
-
Markham, N. R. & Zuker, M. (2005). DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res 33, W577-W581.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Markham, N.R.1
Zuker, M.2
-
20
-
-
0027367175
-
Chromosomal supercoiling in Escherichia coli
-
Miller, W. G. & Simons, R. W. (1993). Chromosomal supercoiling in Escherichia coli. Mol Microbiol 10, 675-684.
-
(1993)
Mol Microbiol
, vol.10
, pp. 675-684
-
-
Miller, W.G.1
Simons, R.W.2
-
21
-
-
0027999001
-
Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii
-
Mojica, F. J., Charbonnier, F., Juez, G., Rodriguez-Valera, F. & Forterre, P. (1994). Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii. J Bacteriol 176, 4966-4973.
-
(1994)
J Bacteriol
, vol.176
, pp. 4966-4973
-
-
Mojica, F.J.1
Charbonnier, F.2
Juez, G.3
Rodriguez-Valera, F.4
Forterre, P.5
-
22
-
-
0035185382
-
DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths
-
Opel, M. L. & Hatfield, G. W. (2001). DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths. Mol Microbiol 39, 191-198.
-
(2001)
Mol Microbiol
, vol.39
, pp. 191-198
-
-
Opel, M.L.1
Hatfield, G.W.2
-
23
-
-
0029762817
-
Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication
-
Pearson, C. E., Zorbas, H., Price, G. B. & Zannis-Hadjopoulos, M. (1996). Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication. J Cell Biochem 63, 1-22.
-
(1996)
J Cell Biochem
, vol.63
, pp. 1-22
-
-
Pearson, C.E.1
Zorbas, H.2
Price, G.B.3
Zannis-Hadjopoulos, M.4
-
24
-
-
3142774839
-
Topological domain structure of the Escherichia coli chromosome
-
Postow, L., Hardy, C. D., Arsuaga, J. & Cozzareill, N. R. (2004). Topological domain structure of the Escherichia coli chromosome. Genes Dev 18, 1766-1779.
-
(2004)
Genes Dev
, vol.18
, pp. 1766-1779
-
-
Postow, L.1
Hardy, C.D.2
Arsuaga, J.3
Cozzareill, N.R.4
-
25
-
-
2642672756
-
Topoisomerase I mutants: The gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling
-
Pruss, G. J. & Drlica, K (1986). Topoisomerase I mutants: The gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling. Proc Natl Acad Sci U S A 83, 8952-8956.
-
(1986)
Proc Natl Acad Sci U S A
, vol.83
, pp. 8952-8956
-
-
Pruss, G.J.1
Drlica, K.2
-
26
-
-
0020426111
-
Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes
-
Pruss, G. J., Manes, S. H. & Drlica, K (1982). Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes. Cell 31, 35-42.
-
(1982)
Cell
, vol.31
, pp. 35-42
-
-
Pruss, G.J.1
Manes, S.H.2
Drlica, K.3
-
27
-
-
2942614909
-
Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs
-
Reimers, J. M., Schmidt K H., Longacre, A., Reschke, D. K. & Wright B. E. (2004). Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs. Microbiology 150, 1457-1466.
-
(2004)
Microbiology
, vol.150
, pp. 1457-1466
-
-
Reimers, J.M.1
Schmidt, K.H.2
Longacre, A.3
Reschke, D.K.4
Wright, B.E.5
-
28
-
-
0019996140
-
Model for the participation of quasi-palindromic DNA sequences in frameshift mutation
-
Ripley, L. S. (1982). Model for the participation of quasi-palindromic DNA sequences in frameshift mutation. Proc Natl Acad Sci U S A 79, 4128-4132.
-
(1982)
Proc Natl Acad Sci U S A
, vol.79
, pp. 4128-4132
-
-
Ripley, L.S.1
-
29
-
-
0020300667
-
Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation
-
Ripley, L. S. & Glickman, B. W. (1983). Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation. Cold Spring Harb Symp Quant Biol 47, 851-861.
-
(1983)
Cold Spring Harb Symp Quant Biol
, vol.47
, pp. 851-861
-
-
Ripley, L.S.1
Glickman, B.W.2
-
30
-
-
0032775768
-
Is there a link between mutation rates and the stringent response in Bacillus subtilis?
-
Rudner, R., Murray, A. & Huda, N. (1999). Is there a link between mutation rates and the stringent response in Bacillus subtilis? Ann N Y Acad Sci 870, 418-422.
-
(1999)
Ann N Y Acad Sci
, vol.870
, pp. 418-422
-
-
Rudner, R.1
Murray, A.2
Huda, N.3
-
31
-
-
33745256707
-
The effect of promoter strength, supercoiling and secondary structure on mutation rates in Escherichia coli
-
Schmidt, K H., Reimers, J. M. & Wright B. E. (2006). The effect of promoter strength, supercoiling and secondary structure on mutation rates in Escherichia coli. Mol Microbiol 60, 1251-1261.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1251-1261
-
-
Schmidt, K.H.1
Reimers, J.M.2
Wright, B.E.3
-
32
-
-
0343240577
-
Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
-
Sinden, R. R. & Pettijohn, D. E. (1981). Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc Natl Acad Sci U S A 78, 224-228.
-
(1981)
Proc Natl Acad Sci U S A
, vol.78
, pp. 224-228
-
-
Sinden, R.R.1
Pettijohn, D.E.2
-
34
-
-
0025005373
-
A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro
-
Theissen, G., Pardon, B. & Wagner, R. (1990). A quantitative assessment for transcriptional pausing of DNA-dependent RNA polymerases in vitro. Anal Biochem 189, 254-261.
-
(1990)
Anal Biochem
, vol.189
, pp. 254-261
-
-
Theissen, G.1
Pardon, B.2
Wagner, R.3
-
35
-
-
3042615152
-
A new approach to 'megaprimer' polymerase chain reaction mutagenesis without an intermediate gel purification step
-
Tyagi, R., Lai, R. & Duggleby, R. G. (2004). A new approach to 'megaprimer' polymerase chain reaction mutagenesis without an intermediate gel purification step. BMC Biotechnol 4, 2.
-
(2004)
BMC Biotechnol
, vol.4
, pp. 2
-
-
Tyagi, R.1
Lai, R.2
Duggleby, R.G.3
-
36
-
-
0034703487
-
A novel mutational hotspot in a natural quasipalindrome in Escherichia coli
-
Viswanathan, M., Lacirignola, J. J., Hurley, R. L & Lovett, S. T. (2000). A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. J Mol Biol 302, 553-564.
-
(2000)
J Mol Biol
, vol.302
, pp. 553-564
-
-
Viswanathan, M.1
Lacirignola, J.J.2
Hurley, R.L.3
Lovett, S.T.4
-
37
-
-
0023221993
-
Repair of single-stranded loops in heteroduplex DNA transfected into mammalian cells
-
Weiss, U. & Wilson, J. H. (1987). Repair of single-stranded loops in heteroduplex DNA transfected into mammalian cells. Proc Natl Acad Sci U S A 84, 1619-1623.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 1619-1623
-
-
Weiss, U.1
Wilson, J.H.2
-
38
-
-
0030051046
-
The effect of the stringent response on mutation rates in Escherichia coli K-12
-
Wright B. E. (1996). The effect of the stringent response on mutation rates in Escherichia coli K-12. Mol Microbiol 19, 213-219.
-
(1996)
Mol Microbiol
, vol.19
, pp. 213-219
-
-
Wright, B.E.1
-
39
-
-
0034032750
-
A biochemical mechanism for nonrandom mutations and evolution
-
Wright, B. E. (2000). A biochemical mechanism for nonrandom mutations and evolution. J Bacteriol 182, 2993-3001.
-
(2000)
J Bacteriol
, vol.182
, pp. 2993-3001
-
-
Wright, B.E.1
-
40
-
-
2442479591
-
Stress-directed adaptive mutations and evolution
-
Wright, B. E. (2004). Stress-directed adaptive mutations and evolution. Mol Microbiol 52, 643-650.
-
(2004)
Mol Microbiol
, vol.52
, pp. 643-650
-
-
Wright, B.E.1
-
41
-
-
0033608998
-
Hypermutation in derepressed operons of Escherichia coli K- 12
-
Wright B. E., Longacre, A. & Reimers, J. M. (1999). Hypermutation in derepressed operons of Escherichia coli K- 12. Proc Natl Acad Sci U S A 96, 5089-5094.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 5089-5094
-
-
Wright, B.E.1
Longacre, A.2
Reimers, J.M.3
-
42
-
-
0037108843
-
Hypermutable bases in the p53 cancer gene are at vulnerable positions in DNA secondary structures
-
Wright, B. E, Reimers, I M., Schmidt K H. & Reschke, D. K. (2002). Hypermutable bases in the p53 cancer gene are at vulnerable positions in DNA secondary structures. Cancer Res 62, 5641-5644.
-
(2002)
Cancer Res
, vol.62
, pp. 5641-5644
-
-
Wright, B.E.1
Reimers, I.M.2
Schmidt, K.H.3
Reschke, D.K.4
-
43
-
-
0038011173
-
Predicting mutation frequencies in stem-loop structures of derepressed genes: Implications for evolution
-
Wright, B. E, Reschke, D. K., Schmidt, K. H, Reimers, J. M. & Knight, W. (2003). Predicting mutation frequencies in stem-loop structures of derepressed genes: Implications for evolution. Mol Microbiol 48, 429-441.
-
(2003)
Mol Microbiol
, vol.48
, pp. 429-441
-
-
Wright, B.E.1
Reschke, D.K.2
Schmidt, K.H.3
Reimers, J.M.4
Knight, W.5
-
44
-
-
2442425574
-
Mechanisms by which transcription can regulate somatic hypermutation
-
Wright, B. E., Schmidt K H. & Minnick M. F. (2004). Mechanisms by which transcription can regulate somatic hypermutation. Genes Immun 5, 176-182.
-
(2004)
Genes Immun
, vol.5
, pp. 176-182
-
-
Wright, B.E.1
Schmidt, K.H.2
Minnick, M.F.3
-
45
-
-
0025870925
-
Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells
-
Zheng, G. X, Kochel, T., Hoepfner, R. W., Timmons, S. E & Sinden, R. R. (1991). Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells. J Mol Biol 221, 107-122.
-
(1991)
J Mol Biol
, vol.221
, pp. 107-122
-
-
Zheng, G.X.1
Kochel, T.2
Hoepfner, R.W.3
Timmons, S.E.4
Sinden, R.R.5
|