Evolution of the carboxylate Jen transporters in fungi

FEMS Yeast Research

Volumn 7, Issue 5, 2007, Pages 646-656

  Lodi, Tiziana ^a   Diffels, Julie ^b   Goffeau, André ^b   Baret, Philippe V ^b  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

Author keywords

Carboxylate transporters; Evolution; Synteny; Yeast

Indexed keywords

CARRIER PROTEIN; FUMARIC ACID; JEN1P TRANSPORTER; JEN2P TRANSPORTER; LACTIC ACID; MALIC ACID; PYRUVIC ACID; SUCCINIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANALYTIC METHOD; COMPARATIVE STUDY; CONFERENCE PAPER; CONTROLLED STUDY; EUASCOMYCETES; FUNGUS; GENE DUPLICATION; HEMIASCOMYCETES; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN MOTIF; SACCHAROMYCES; YARROWIA LIPOLYTICA; YEAST;

AMINO ACID SEQUENCE; ASCOMYCOTA; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; MONOCARBOXYLIC ACID TRANSPORTERS; PHYLOGENY; SYMPORTERS; SYNTENY;

FUNGI; KLUYVEROMYCES LACTIS; SACCHAROMYCES; SACCHAROMYCETES; YARROWIA LIPOLYTICA;

EID: 34447325410     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2007.00245.x     Document Type: Conference Paper

References (29)

1. Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 : 3389 3402.
2. Akita O, Nishimori C, Shimamoto T, Fujii T Iefuji H (2000) Transport of pyruvate in Saccharomyces cerevisiae and cloning of the gene encoded pyruvate permease. Biosci Biotechnol Biochem 64 : 980 984.
3. André B (1995) An overview of membrane transport proteins in Saccharomyces cerevisiae. Yeast 11 : 1575 1611.
4. Bailey TL Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28 36. AAAI Press, Menlo Park, CA.
5. Byrne KP Wolfe KH (2006) The yeast gene order browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15 : 1456 1461.
6. Casal M, Paiva S, Andrade RP, Gancedo C Leao C (1999) The lactate proton symport of Saccharomyces cerevisiae is encoded by JEN1. J Bacteriol 181 : 2620 2623.
7. Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, Waterston R, Cohen BA Johnston M (2003) Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301 : 71 76.
8. Dietrich FS, Voegeli S, Brachat S et al 2004) The Ashbya gossypii genome as tool for mapping the ancient Saccharomyces cerevisiae genome. Science 304 : 304 307.
9. Dujon B (2006) Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet 22 : 375 387.
10. Dujon B, Sherman D, Fischer G et al 2004) Genome evolution in yeast. Nature 430 : 35 44.
11. Felsenstein J (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5 : 164 166.
12. Galagan JE, Calvo SE, Borkovich KA et al 2003) The genome sequence of the filamentous fungus Neurospora crassac. Nature 422 : 859 868.
13. Galagan JE, Calvo SE, Cuomo C et al 2005) Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature 438 : 1105 1115.
14. Goffeau A, Barrell BG, Bussey H et al 1996) Life with 6000 genes. Science 274 : 563 567.
15. Kellis M, Patterson N, Endrizzi M, Birren BW Lander ES (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423 : 241 254.
16. Kellis M, Birren BW Lander ES (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428 : 617 624.
17. Krogh A, Larsson B, von Heijne G Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305 : 567 580.
18. Lehninger A (1982) Principle of Biochemistry. Worth Publishers Inc., New York.
19. Lodi T, Fontanesi F Guiard B (2002) Co-ordinate regulation of lactate metabolism genes in yeast: the role of the lactate permease gene JEN1. Mol Genet Genomics 266 : 838 847.
20. Lodi T, Fontanesi F, Ferrero I Donnini C (2004) Carboxylic acids permeases in yeast: two genes in Kluyveromyces lactis. Gene 339 : 111 119.
21. Machida M, Asai K, Sano M et al 2005) Genome sequencing and analysis of Aspergillus oryzae. Nature 438 : 1157 1161.
22. Nelissen B, Mordant P, Jonniaux JL, De Wachter R Goffeau A (1995) Phylogenetic classification of the major superfamily of membrane transport facilitators, as deduced from yeast genome sequencing. FEBS Lett 377 : 232 236.
23. Nierman WC, Pain A, Anderson MJ et al 2005) Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature 438 : 1151 1156.
24. Notredame C, Higgins DG Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302 : 205 217.
25. Page RDM (1996) TreeView: An application to display phylogenetic trees on personal computers. Comp Appl Biosci 12 : 357 358.
26. Queirós O, Pereira L, Paiva S, Moradas-Ferreira P Casal M (2007) Functional analysis of Kluyveromyces lactis carboxylic acids permeases: heterologous expression of KlJEN1 and KlJEN2 genes. Curr Genet 51 : 161 169.
27. Saier MH (2000) A functional-phylogenetic classification system for transmembrane solute transporters. Microbiol Mol Biol Rev 64 : 354 411.
28. Souciet J, Aigle M, Artiguenave F et al 2000) Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. FEBS Lett 487 : 3 12.
29. Wood V, Gwilliam R, Rajandream MA et al 2002) The genome sequence of Schizosaccharomyces pombe. Nature 415 : 871 880.