-
1
-
-
0001711937
-
Ribonuclease H
-
In: Linn, S.M. Roberts, R.J., eds), pp. Cold Spring Harbor Laboratory, New York, NY.
-
Crouch RJ Dirksen M-L (1982) Ribonuclease H. In : Nuclease (Linn SM Roberts RJ, eds), pp. 211 241. Cold Spring Harbor Laboratory, New York, NY.
-
(1982)
Nuclease
, pp. 211-241
-
-
Crouch, R.J.1
Dirksen, M.-L.2
-
2
-
-
0033547793
-
Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNase HIII from Bacillus subtilis: Classification of RNases H into three families
-
Ohtani N, Haruki M, Morikawa M, Crouch RJ, Itaya M Kanaya S (1999) Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNase HIII from Bacillus subtilis: classification of RNases H into three families. Biochemistry 38, 605 618.
-
(1999)
Biochemistry
, vol.38
, pp. 605-618
-
-
Ohtani, N.1
Haruki, M.2
Morikawa, M.3
Crouch, R.J.4
Itaya, M.5
Kanaya, S.6
-
4
-
-
7444232276
-
Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii
-
Ohtani N, Yanagawa H, Tomita M Itaya M (2004) Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii Nucleic Acids Res 32, 5809 5819.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5809-5819
-
-
Ohtani, N.1
Yanagawa, H.2
Tomita, M.3
Itaya, M.4
-
5
-
-
0002929551
-
Physiological functions of E. coli RNase HI
-
In: Crouch, R.J. Toulme, J.J., eds), pp. INSERM, Paris.
-
Kogoma T Foster PL (1998) Physiological functions of E. coli RNase HI. In : Ribonucleases H (Crouch RJ Toulme JJ, eds), pp. 39 66. INSERM, Paris.
-
(1998)
Ribonucleases H
, pp. 39-66
-
-
Kogoma, T.1
Foster, P.L.2
-
6
-
-
0033512305
-
Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease
-
Qiu J, Qian Y, Frank P, Wintersberger U Shen B (1999) Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease. Mol Cell Biol 19, 8361 8371.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 8361-8371
-
-
Qiu, J.1
Qian, Y.2
Frank, P.3
Wintersberger, U.4
Shen, B.5
-
7
-
-
0033756041
-
The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: Implications for roles of RNases H in DNA replication and repair
-
Arudchandran A, Cerritelli S, Narimatsu S, Itaya M, Shin DY, Shimada Y Crouch RJ (2000) The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repair. Genes Cells 5, 789 802.
-
(2000)
Genes Cells
, vol.5
, pp. 789-802
-
-
Arudchandran, A.1
Cerritelli, S.2
Narimatsu, S.3
Itaya, M.4
Shin, D.Y.5
Shimada, Y.6
Crouch, R.J.7
-
8
-
-
0037032428
-
Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII
-
Haruki M, Tsunaka Y, Morikawa M Kanaya S (2002) Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII. FEBS Lett 531, 204 208.
-
(2002)
FEBS Lett
, vol.531
, pp. 204-208
-
-
Haruki, M.1
Tsunaka, Y.2
Morikawa, M.3
Kanaya, S.4
-
9
-
-
0037168516
-
Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts
-
Rydberg B Game J (2002) Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts. Proc Natl Acad Sci USA 99, 16654 16659.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16654-16659
-
-
Rydberg, B.1
Game, J.2
-
10
-
-
0345354684
-
Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice
-
Cerritelli SM, Frolova EG, Feng C, Grinberg A, Love PE Crouch RJ (2003) Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice. Mol Cell 11, 807 815.
-
(2003)
Mol Cell
, vol.11
, pp. 807-815
-
-
Cerritelli, S.M.1
Frolova, E.G.2
Feng, C.3
Grinberg, A.4
Love, P.E.5
Crouch, R.J.6
-
11
-
-
33746522835
-
Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection
-
Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E, Ali M, Semple C, Aicardi J, Babul-Hirji R et al. (2006) Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection. Nat Genet 38, 910 916.
-
(2006)
Nat Genet
, vol.38
, pp. 910-916
-
-
Crow, Y.J.1
Leitch, A.2
Hayward, B.E.3
Garner, A.4
Parmar, R.5
Griffith, E.6
Ali, M.7
Semple, C.8
Aicardi, J.9
Babul-Hirji, R.10
-
12
-
-
0002615512
-
RNase H of retroviral reverse transcriptases
-
In: Crouch, R.J. Toulme, J.J., eds), pp. INSERM, Paris.
-
Hughes SH, Arnold E Hostomsky Z (1998) RNase H of retroviral reverse transcriptases. In : Ribonucleases H (Crouch RJ Toulme JJ, eds), pp. 195 224. INSERM, Paris.
-
(1998)
Ribonucleases H
, pp. 195-224
-
-
Hughes, S.H.1
Arnold, E.2
Hostomsky, Z.3
-
13
-
-
0032052258
-
A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAs
-
Cerritelli SM, Fedoroff OY, Reid BR Crouch RJ (1998) A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAs. Nucleic Acid Res 26, 1834 1840.
-
(1998)
Nucleic Acid Res
, vol.26
, pp. 1834-1840
-
-
Cerritelli, S.M.1
Fedoroff, O.Y.2
Reid, B.R.3
Crouch, R.J.4
-
14
-
-
0033588313
-
NMR structure of the N-terminal domain of Saccharomyces cerevisiae RNase HI reveals a fold with a strong resemblance to the N-terminal domain of ribosomal protein L9
-
Evans SP Bycroft M (1999) NMR structure of the N-terminal domain of Saccharomyces cerevisiae RNase HI reveals a fold with a strong resemblance to the N-terminal domain of ribosomal protein L9. J Mol Biol 291, 661 669.
-
(1999)
J Mol Biol
, vol.291
, pp. 661-669
-
-
Evans, S.P.1
Bycroft, M.2
-
15
-
-
17844383717
-
Eukaryotic RNase H1 act processively by interactions through the duplex RNA-binding domain
-
Gaidamakov SA, Gorshkova II, Schuck P, Steinbach PJ, Yamada H, Crouch RJ Cerritelli SM (2005) Eukaryotic RNase H1 act processively by interactions through the duplex RNA-binding domain. Nucleic Acids Res 33, 2166 2175.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2166-2175
-
-
Gaidamakov, S.A.1
Gorshkova, I.I.2
Schuck, P.3
Steinbach, P.J.4
Yamada, H.5
Crouch, R.J.6
Cerritelli, S.M.7
-
16
-
-
0029295965
-
The non-RNase H domain of Saccharomyces cerevisiae RNase H1 binds double-stranded RNA: Magnesium modulates the switch between double-stranded RNA binding and RNase H activity
-
Cerritelli SM Crouch RJ (1995) The non-RNase H domain of Saccharomyces cerevisiae RNase H1 binds double-stranded RNA: magnesium modulates the switch between double-stranded RNA binding and RNase H activity. RNA 1, 246 259.
-
(1995)
RNA
, vol.1
, pp. 246-259
-
-
Cerritelli, S.M.1
Crouch, R.J.2
-
17
-
-
21244451435
-
Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
-
Nowotny M, Gaidamakov SA, Crouch RJ Yang W (2005) Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis. Cell 121, 1005 1016.
-
(2005)
Cell
, vol.121
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
18
-
-
0034742629
-
Isolation and characterization of psychrotrophic bacteria from oil-reservoir water and oil sands
-
Kato T, Haruki M, Imanaka T, Morikawa M Kanaya S (2001) Isolation and characterization of psychrotrophic bacteria from oil-reservoir water and oil sands. Appl Microbiol Biotechnol 55, 794 800.
-
(2001)
Appl Microbiol Biotechnol
, vol.55
, pp. 794-800
-
-
Kato, T.1
Haruki, M.2
Imanaka, T.3
Morikawa, M.4
Kanaya, S.5
-
19
-
-
0035712765
-
Heat labile ribonuclease HI from a psychrotrophic bacterium: Gene cloning, characterization and site-directed mutagenesis
-
Ohtani N, Haruki M, Morikawa M Kanaya S (2001) Heat labile ribonuclease HI from a psychrotrophic bacterium: gene cloning, characterization and site-directed mutagenesis. Protein Eng 14, 975 982.
-
(2001)
Protein Eng
, vol.14
, pp. 975-982
-
-
Ohtani, N.1
Haruki, M.2
Morikawa, M.3
Kanaya, S.4
-
20
-
-
33646229804
-
Identification of RNase HII form psychrotrophic bacterium, Shewanella sp. SIB1 as a high-activity type RNase H
-
Chon H, Tadokoro T, Ohtani N, Koga Y, Takano K Kanaya S (2006) Identification of RNase HII form psychrotrophic bacterium, Shewanella sp. SIB1 as a high-activity type RNase H. FEBS J 273, 2264 2275.
-
(2006)
FEBS J
, vol.273
, pp. 2264-2275
-
-
Chon, H.1
Tadokoro, T.2
Ohtani, N.3
Koga, Y.4
Takano, K.5
Kanaya, S.6
-
21
-
-
0347379925
-
Human RNase H1 uses one tryptophan and two lysines to position the enzyme at the 3′-DNA/5′-RNA terminus of the heteroduplex substrate
-
Lima WF, Wu H, Nichols JG, Prakash TP, Ravikumer V Crooke ST (2003) Human RNase H1 uses one tryptophan and two lysines to position the enzyme at the 3′-DNA/5′-RNA terminus of the heteroduplex substrate. J Biol Chem 278, 49860 49867.
-
(2003)
J Biol Chem
, vol.278
, pp. 49860-49867
-
-
Lima, W.F.1
Wu, H.2
Nichols, J.G.3
Prakash, T.P.4
Ravikumer, V.5
Crooke, S.T.6
-
23
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215, 403 410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
20444452106
-
The SCO2299 gene from Streptomyces coelicolor A3(2) encodes a bifunctional enzyme consisting of an RNase H domain and an acid phosphatase domain
-
Ohtani N, Saito N, Tomita M, Itaya M Itoh A (2005) The SCO2299 gene from Streptomyces coelicolor A3(2) encodes a bifunctional enzyme consisting of an RNase H domain and an acid phosphatase domain. FEBS J 272, 2828 2837.
-
(2005)
FEBS J
, vol.272
, pp. 2828-2837
-
-
Ohtani, N.1
Saito, N.2
Tomita, M.3
Itaya, M.4
Itoh, A.5
-
25
-
-
0017596525
-
A numerical taxonomic study of some Pseudomonas-like marine bacteria
-
Lee JV, Gibson DM Ward FB (1977) A numerical taxonomic study of some Pseudomonas-like marine bacteria. J Gen Microbiol 98, 439 451.
-
(1977)
J Gen Microbiol
, vol.98
, pp. 439-451
-
-
Lee, J.V.1
Gibson, D.M.2
Ward, F.B.3
-
26
-
-
0032964545
-
Phylogeny of marine and freshwater Shewanella: Reclassification of Shewanella putrefaciens NCIMB 400 as Shewanella frigidimarina
-
Reid GA Gordon EH (1999) Phylogeny of marine and freshwater Shewanella: reclassification of Shewanella putrefaciens NCIMB 400 as Shewanella frigidimarina. Int J Syst Bacteriol 49, 189 191.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 189-191
-
-
Reid, G.A.1
Gordon, E.H.2
-
27
-
-
0036867531
-
Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxic-anoxic interface of the Gotland Deep in the central Baltic Sea
-
Brettar I, Christen R Hofle MG (2002) Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxic-anoxic interface of the Gotland Deep in the central Baltic Sea. Int J Syst Evol Microbiol 52, 2211 2217.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 2211-2217
-
-
Brettar, I.1
Christen, R.2
Hofle, M.G.3
-
28
-
-
0031671525
-
Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment
-
Nogi Y, Masui N Kato C (1998) Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2, 1 7.
-
(1998)
Extremophiles
, vol.2
, pp. 1-7
-
-
Nogi, Y.1
Masui, N.2
Kato, C.3
-
29
-
-
20044393188
-
Life at depth: Photobacterium profundum genome sequence and expression analysis
-
Vezzi A, Campanaro S, D'Angelo M, Simonato F, Vitulo N, Lauro FM, Cestaro A, Malacrida G, Simionati B, Cannata N, Romualdi C, Bartlett DH Valle G (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307, 1459 1461.
-
(2005)
Science
, vol.307
, pp. 1459-1461
-
-
Vezzi, A.1
Campanaro, S.2
D'Angelo, M.3
Simonato, F.4
Vitulo, N.5
Lauro, F.M.6
Cestaro, A.7
Malacrida, G.8
Simionati, B.9
Cannata, N.10
Romualdi, C.11
Bartlett, D.H.12
Valle, G.13
-
30
-
-
0034548849
-
Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea ice
-
Huston AL, Krieger-Brockett BB Deming JW (2000) Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea ice. Appl Environ Microbiol 2, 383 388.
-
(2000)
Appl Environ Microbiol
, vol.2
, pp. 383-388
-
-
Huston, A.L.1
Krieger-Brockett, B.B.2
Deming, J.W.3
-
31
-
-
23344439437
-
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
-
Methe BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, Moult J, Madupu R, Nelson WC, Dodson RJ et al. (2005) The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci USA 102, 10913 10918.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10913-10918
-
-
Methe, B.A.1
Nelson, K.E.2
Deming, J.W.3
Momen, B.4
Melamud, E.5
Zhang, X.6
Moult, J.7
Madupu, R.8
Nelson, W.C.9
Dodson, R.J.10
-
32
-
-
13544274146
-
Low-temperature growth of Shewanella oneidensis MR-1
-
Abboud R, Popa R, Souza-Egipsy V, Giometti CS, Tollaksen S, Mosher JJ, Findelay RH Nealson KH (2005) Low-temperature growth of Shewanella oneidensis MR-1. Appl Environ Microbiol 71, 811 816.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 811-816
-
-
Abboud, R.1
Popa, R.2
Souza-Egipsy, V.3
Giometti, C.S.4
Tollaksen, S.5
Mosher, J.J.6
Findelay, R.H.7
Nealson, K.H.8
-
33
-
-
0025740545
-
A combination of RNase H (rnh) and recBCD or sbcB mutations in E. coli K12 adversely affects growth
-
Itaya M Crouch RJ (1991) A combination of RNase H (rnh) and recBCD or sbcB mutations in E. coli K12 adversely affects growth. Mol Gen Genet 227, 424 432.
-
(1991)
Mol Gen Genet
, vol.227
, pp. 424-432
-
-
Itaya, M.1
Crouch, R.J.2
-
34
-
-
0032912813
-
Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168
-
Itaya M, Omori A, Kanaya S, Crouch RJ, Tanaka T Kondo K (1999) Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168. J Bacteriol 181, 2118 2123.
-
(1999)
J Bacteriol
, vol.181
, pp. 2118-2123
-
-
Itaya, M.1
Omori, A.2
Kanaya, S.3
Crouch, R.J.4
Tanaka, T.5
Kondo, K.6
-
35
-
-
0034038243
-
Characterization of ribonuclease HII from E. coli overproduced in a soluble form
-
Ohtani N, Haruki M, Muroya A, Morikawa M Kanaya S (2000) Characterization of ribonuclease HII from E. coli overproduced in a soluble form. J Biochem (Tokyo) 127, 895 899.
-
(2000)
J Biochem (Tokyo)
, vol.127
, pp. 895-899
-
-
Ohtani, N.1
Haruki, M.2
Muroya, A.3
Morikawa, M.4
Kanaya, S.5
-
36
-
-
0027939197
-
A novel strategy for stabilization of E. coli ribonuclease HI involving a screen for an intragenic suppressor of carboxyl-terminal deletions
-
Haruki M, Noguchi E, Akasako A, Oobatake M, Itaya M Kanaya S (1994) A novel strategy for stabilization of E. coli ribonuclease HI involving a screen for an intragenic suppressor of carboxyl-terminal deletions. J Biol Chem 269, 26904 26911.
-
(1994)
J Biol Chem
, vol.269
, pp. 26904-26911
-
-
Haruki, M.1
Noguchi, E.2
Akasako, A.3
Oobatake, M.4
Itaya, M.5
Kanaya, S.6
-
37
-
-
0019838194
-
Cloning of the genes for penicillinase, penP and penI, of Bacillus licheniformis in some vector plasmids and their expression in E. coli, Bacillus subtilis, and Bacillus licheniformis
-
Imanaka T, Tanaka T, Tsunekawa H Aiba S (1981) Cloning of the genes for penicillinase, penP and penI, of Bacillus licheniformis in some vector plasmids and their expression in E. coli, Bacillus subtilis, and Bacillus licheniformis. J Bacteriol 147, 776 786.
-
(1981)
J Bacteriol
, vol.147
, pp. 776-786
-
-
Imanaka, T.1
Tanaka, T.2
Tsunekawa, H.3
Aiba, S.4
-
38
-
-
0027477879
-
PH-dependent thermostabilization of E. coli ribonuclease HI by histidine to alanine substitutions
-
Kanaya S, Oobatake M, Nakamura H Ikehara M (1993) pH-dependent thermostabilization of E. coli ribonuclease HI by histidine to alanine substitutions. J Biotechnol 28, 117 136.
-
(1993)
J Biotechnol
, vol.28
, pp. 117-136
-
-
Kanaya, S.1
Oobatake, M.2
Nakamura, H.3
Ikehara, M.4
-
39
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK (
-
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680 685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
-
40
-
-
84871693371
-
The spectrophotometric determination of tyrosine and tryptophan in proteins
-
Goodwin TW Morton RA (1946) The spectrophotometric determination of tyrosine and tryptophan in proteins. Biochem J 40, 628 632.
-
(1946)
Biochem J
, vol.40
, pp. 628-632
-
-
Goodwin, T.W.1
Morton, R.A.2
-
41
-
-
0025877250
-
Stabilization of E. coli ribonuclease H by introduction of an artificial disulfide bond
-
Kanaya S, Katsuda C, Kimura S, Nakai T, Kitakuni E, Nakamura H, Katayanagi K, Morikawa K Ikehara M (1991) Stabilization of E. coli ribonuclease H by introduction of an artificial disulfide bond. J Biol Chem 266, 6038 6044.
-
(1991)
J Biol Chem
, vol.266
, pp. 6038-6044
-
-
Kanaya, S.1
Katsuda, C.2
Kimura, S.3
Nakai, T.4
Kitakuni, E.5
Nakamura, H.6
Katayanagi, K.7
Morikawa, K.8
Ikehara, M.9
-
42
-
-
0033213981
-
Properties of cloned and expressed human RNase H1
-
Wu H, Lima WF Crooke ST (1999) Properties of cloned and expressed human RNase H1. J Biol Chem 274, 28270 28278.
-
(1999)
J Biol Chem
, vol.274
, pp. 28270-28278
-
-
Wu, H.1
Lima, W.F.2
Crooke, S.T.3
-
43
-
-
0016045397
-
DNA sequence analysis: A general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping
-
Jay E, Bambara R, Padmanabham P Wu R (1974) DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping. Nucleic Acids Res 1, 331 353.
-
(1974)
Nucleic Acids Res
, vol.1
, pp. 331-353
-
-
Jay, E.1
Bambara, R.2
Padmanabham, P.3
Wu, R.4
|