A tuneable attractor underlies yeast respiratory dynamics

BioSystems

Volumn 90, Issue 1, 2007, Pages 287-294

  Murray, Douglas B ^a   Lloyd, David ^b  

^a KEIO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Cell dynamics; Chaotic attractor; Respiration; Saccharomyces cerevisiae

Indexed keywords

CHAOTIC DYNAMICS; ENVIRONMENTAL CONDITIONS; EUKARYOTE; MOLECULAR ANALYSIS; PH; RESPIRATION; YEAST;

ARTICLE; CELL DIVISION; CELL FUNCTION; CHEMICAL STRUCTURE; DYNAMICS; ENVIRONMENT; EUKARYOTIC CELL; NONHUMAN; OSCILLATION; PH MEASUREMENT; SACCHAROMYCES CEREVISIAE; YEAST;

EUKARYOTA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 34447271553     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2006.09.032     Document Type: Article

References (45)

1. Aon M.A., Cortassa S., Akar F.G., and O'Rourke B. Mitochondrial criticality: a new concept at the turning point of life or death. Biochim. Biophys. Acta 1762 (2006) 232-240
2. Bar-Yam Y., and Epstein I.R. Response of complex networks to stimuli. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 4341-4345
3. Breeden L.L. Periodic transcription: a cycle within a cycle. Curr. Biol. 13 (2003) R31-R38
4. Conour J.E., Graham W.V., and Gaskins H.R. A combined in vitro/bioinformatic investigation of redox regulatory mechanisms governing cell cycle progression. Physiol. Genomics 18 (2004) 196-205
5. Davey H.M., Davey C.L., Woodward A.M., Edmonds A.N., Lee A.W., and Kell D.B. Oscillatory, stochastic and chaotic growth rate fluctuations in permittistatically controlled yeast cultures. Biosystems 39 (1996) 43-61
6. Dickinson J.R. Are yeasts free-living unicellular eukaryotes?. Lett. Appl. Microbiol. 41 (2005) 445-447
7. Foster P.L. Adaptive mutation: the uses of adversity. Annu. Rev. Microbiol. 47 (1993) 467-504
8. Halsey T.C., and Jensen M.H. Hurricanes and butterflies. Nature 428 (2004) 127-128
9. Jenster G. A visualisation concept of dynamic signalling networks. Mol. Cell Endocrinol. 218 (2004) 1-6
10. Keulers M., Suzuki T., Satroutdinov A.D., and Kuriyama H. Autonomous metabolic oscillation in continuous culture of Saccharomyces cerevisiae grown on ethanol. FEMS Microbiol. Lett. 142 (1996) 253-258
11. Keulers M., Satroutdinov A.D., Suzuki T., and Kuriyama H. Synchronization affector of autonomous short-period-sustained oscillation of Saccharomyces cerevisiae. Yeast 12 (1996) 673-682
12. Klevecz R.R., and Dowse H.B. Tuning in the transcriptome: basins of attraction in the yeast cell cycle. Cell Prolif. 33 (2000) 209-218
13. Klevecz R.R., Bolen J., Forrest G., and Murray D.B. A genome wide oscillation in transcription gates DNA replication and cell cycle. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 1200-1205
14. Lai Y.C., Liu Z., Billings L., and Schwartz I.B. Noise-induced unstable dimension variability and transition to chaos in random dynamical systems. Phys. Rev. E: Stat. Nonlinear Soft Matter Phys. 67 (2003) 026210
15. Li F., Long T., Lu Y., Ouyang Q., and Tang C. The yeast cell-cycle network is robustly designed. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 4781-4786
16. Lloyd A.L., and Lloyd D. Hypothesis: the central oscillator of the circadian clock is a controlled chaotic attractor. Biosystems 29 (1993) 77-85
17. Lloyd A.L., and Lloyd D. Chaos: its detection and significance in biology. Biol. Rhythm Res. 26 (1995) 233-252
18. Lloyd D. Circadian and ultradian clock-controlled rhythms in unicellular microorganisms. Adv. Microb. Physiol. 39 (1998) 291-338
19. Lloyd D., and Gilbert D.A. Temporal organization of the cell division cycle of eukaryotic microbes. Symp. Soc. Gen. Microbiol. 56 (1998) 251-278
20. Lloyd D., and Murray D.B. Redox cycling of intracellular thiols: state variables for ultradian, cell division cycle and circadian cycles?. In: Vanden Driessche T., Guisset J.L., and Petiau-De Vries P. (Eds). The Redox State and Circadian Rhythms (2000), Springer-Verlag
21. Lloyd D., and Murray D.B. Ultradian metronome: timekeeper for orchestration of cellular coherence. Trends Biochem. Sci. 30 (2005) 373-377
22. Lloyd D., and Murray D.B. The temporal architecture of eukaryotic growth. FEBS Lett. 580 (2006) 2830-2835
23. Lloyd D., Edwards S.W., and Fry J.C. Temperature-compensated oscillations in respiration and cellular protein content in synchronous cultures of Acanthamoeba castellanii. Proc. Natl. Acad. Sci. U.S.A. 79 (1982) 3785-3788
24. Lloyd D., Lloyd A.L., and Olsen L.F. The cell division cycle: a physiologically plausible dynamic model can exhibit chaotic solutions. Biosystems 27 (1992) 17-24
25. Lloyd D., Salgado L.E.J., Turner M.P., and Murray D.B. Respiratory oscillations in yeast: clock-driven mitochondrial cycles of energization. FEBS Lett. 519 (2002) 41-44
26. Lloyd D., Salgado L.E., Turner M.P., Suller M.T., and Murray D. Cycles of mitochondrial energization driven by the ultradian clock in a continuous culture of Saccharomyces cerevisiae. Microbiology 148 (2002) 3715-3724
27. Lloyd D., Lemar K.M., Salgado L.E.J., Gould T.M., and Murray D.B. Respiratory oscillations in yeast: mitochondrial reactive oxygen species, apoptosis and time; a hypothesis. FEM Yeast Res. 3 (2003) 333-339
28. Monod J. La technique de culture continue, th'eorie et applications. Ann. l'Institut Pasteur 79 (1952) 390-410
29. Morre D.J., Ternes P., and Morre D.M. Cell enlargement of plant tissue explants oscillates with a temperature-compensated period of ca. 24 min. In Vitro Cell Dev. Biol. Plant 38 (2002) 18-28
30. Muller D., Exler S., Aguilera-Vazquez L., Guerrero-Martin E., and Reuss M. Cyclic AMP mediates the cell cycle dynamics of energy metabolism in Saccharomyces cerevisiae. Yeast 20 (2003) 351-367
31. Murray D.B. On the Temporal Self-Organisation of Saccharomyces cerevisae. Curr. Genomics 5 (2004) 665-671
32. Murray D.B., Klevecz R.R., and Lloyd D. Generation and maintenance of synchrony in Saccharomyces cerevisiae continuous culture. Exp. Cell Res. 287 (2003) 10-15
33. Murray D.B., Engelen F., Lloyd D., and Kuriyama H. Involvement of glutathione in the regulation of respiratory oscillation during a continuous culture of Saccharomyces cerevisiae. Microbiology 145 (1999) 2739-2745
34. Murray D.B., Roller S., Kuriyama H., and Lloyd D. Clock control of ultradian respiratory oscillation found during yeast continuous culture. J. Bacteriol. 183 (2001) 7253-7259
35. O'Rourke B., Cortassa S., and Aon M.A. Mitochondrial ion channels: gatekeepers of life and death. Physiology (Bethesda) 20 (2005) 303-315
36. Ott E., Grebogi C., and Yorke J.A. Controlling chaos. Phys. Rev. Lett. 64 (1990) 1196-1199
37. Restrepo J.G., Ott E., and Hunt B.R. Synchronization in large directed networks of coupled phase oscillators. Chaos 16 (2006) 015107
38. Satroutdinov A.D., Kuriyama H., and Kobayashi H. Oscillatory metabolism of Saccharomyces cerevisiae in continuous culture. FEMS Microbiol. Lett. 77 (1992) 261-267
39. Sohn H.Y., Murray D.B., and Kuriyama H. Ultradian oscillation of Saccharomyces cerevisiae during aerobic continuous culture: hydrogen sulphide mediates population synchrony. Yeast 16 (2000) 1185-1190
40. Tu B.P., Kudlicki A., Rowicka M., and McKnight S.L. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310 (2005) 1152-1158
41. Tyson J.J., Csikasz-Nagy A., and Novak B. The dynamics of cell cycle regulation. Bioessays 24 (2002) 1095-1109
42. Verstrepen K.J., and Klis F.M. Flocculation, adhesion and biofilm formation in yeasts. Mol. Microbiol. 60 (2006) 5-15
43. Winfree A.T. The Geometry of Biological Time. 2 ed. (2001), Springer Verlag
44. Wolf J., Sohn H., Heinrich R., and Kuriyama H. Mathematical analysis of a mechanism for autonomous metabolic oscillations in continuous culture of Saccharomyces cerevisiae. FEBS Lett. 499 (2001) 230-234
45. Xu Z., and Tsurugi K. A potential mechanism of energy-metabolism oscillation in an aerobic chemostat culture of the yeast Saccharomyces cerevisiae. FEBS J. 273 (2006) 1696-1709