메뉴 건너뛰기




Volumn 365, Issue , 2007, Pages 347-370

Genome-scale discovery and characterization of class-specific protein sequences: An example using the protein phosphatases of arabidopsis thaliana

Author keywords

Arabidopsis thaliana; functional genomics; Protein phosphatases

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 34447251307     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-267-X:347     Document Type: Article
Times cited : (12)

References (26)
  • 1
    • 0035415662 scopus 로고    scopus 로고
    • Protein tyrosine phosphatases: Prospects for therapeutics
    • DOI 10.1016/S1367-5931(00)00223-4
    • Zhang, Z.-Y. (2001) Protein tyrosine phosphatases: prospects for therapeutics. Curr. Opin. Chem. Biol. 5, 416-423. (Pubitemid 32900514)
    • (2001) Current Opinion in Chemical Biology , vol.5 , Issue.4 , pp. 416-423
    • Zhang, Z.-Y.1
  • 3
    • 20444419344 scopus 로고    scopus 로고
    • Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance
    • DOI 10.1038/ncb1258
    • MacKeigan, J.P., Murphy, L.O., and Blenis, J. (2005) Sensitized RNAi screen of human kinases and phosphatases identifies new regulators of apoptosis and chemoresistance. Nat. Cell Biol. 7, 591-600. (Pubitemid 40796982)
    • (2005) Nature Cell Biology , vol.7 , Issue.6 , pp. 591-600
    • MacKeigan, J.P.1    Murphy, L.O.2    Blenis, J.3
  • 4
    • 1542373671 scopus 로고    scopus 로고
    • Protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis
    • Protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. Genes Dev. 18, 448-460.
    • Genes Dev. , vol.18 , pp. 448-460
  • 5
    • 2442602365 scopus 로고    scopus 로고
    • Plant PP2C phosphatases: Emerging functions in stress signaling
    • DOI 10.1016/j.tplants.2004.03.007, PII S1360138504000615
    • Schweighofer, A., Hirt, H., and Meskiene I. (2004) Plant PP2C phosphatases: emerging functions in stress signaling. Trends Plant Sci. 9, 236-243. (Pubitemid 38617222)
    • (2004) Trends in Plant Science , vol.9 , Issue.5 , pp. 236-243
    • Schweighofer, A.1    Hirt, H.2    Meskiene, I.3
  • 8
    • 0029665409 scopus 로고    scopus 로고
    • Identification of sequence patterns with profile analysis
    • Gribskov, M. and Veretnik, S. (1996) Identification of sequence patterns with profile analysis. Methods Enzymol. 266, 198-211.
    • (1996) Methods Enzymol. , vol.266 , pp. 198-211
    • Gribskov, M.1    Veretnik, S.2
  • 9
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy, S.R. (1998) Profile hidden Markov models. Bioinformatics 14, 755-763. (Pubitemid 28552108)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 10
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 11
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • (Hillis, D. M., Moritz, C., and Mable, B. K., eds.), Sinauer Associates, Sunderland, MA
    • D. L. Swofford, G. J. Olsen, P. J. Waddell, and D. M. Hillis (1996) Phylogenetic inference, in Molecular Systematics, 2nd ed. (Hillis, D. M., Moritz, C., and Mable, B. K., eds.), Sinauer Associates, Sunderland, MA, pp. 407-514.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 12
    • 0029901637 scopus 로고    scopus 로고
    • Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
    • Felsenstein, J. (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 266, 418-426.
    • (1996) Methods Enzymol. , vol.266 , pp. 418-426
    • Felsenstein, J.1
  • 13
    • 0142057022 scopus 로고    scopus 로고
    • Protein phosphatases in plants
    • DOI 10.1146/annurev.arplant.54.031902.134743
    • Luan, S. (2003) Protein phosphatases in plants. Annu. Rev. Plant Biol. 54, 63-92. (Pubitemid 37399987)
    • (2003) Annual Review of Plant Biology , vol.54 , pp. 63-92
    • Luan, S.1
  • 15
    • 0035161543 scopus 로고    scopus 로고
    • Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
    • Bernal, A., Ear, U., and Kyrpides, N. (2001) Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nuc. Acids Res. 29, 126-127. (Pubitemid 32054425)
    • (2001) Nucleic Acids Research , vol.29 , Issue.1 , pp. 126-127
    • Bernal, A.1    Ear, U.2    Kyrpides, N.3
  • 17
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The ClustalX windows interface: flexible strategies for multiple-sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 18
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. (2004) MUSCLE: multiple-sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 19
    • 3242878412 scopus 로고    scopus 로고
    • 3DCoffeeιgs: A web server for combining sequences and structures into a multiple sequence alignment
    • DOI 10.1093/nar/gkh382
    • Poirot, O., Suhre, K., Abergel, C., O'Toole, E., and Notredame, C. (2004) 3DCoffee: a web server for mixing Sequences and Structures into multiplesequence alignments. Nuc. Acids Res. 32, W37-W40. (Pubitemid 38997295)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Poirot, O.1    Suhre, K.2    Abergel, C.3    O'Toole, E.4    Notredame, C.5
  • 21
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H.A., Strimmer, K., Vingron, M., and von Haeseler, A. (2002) TREEPUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504. (Pubitemid 34284960)
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 22
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R.D.M. (1996) TreeView: An application to display phylogenetic trees on personal computers. Computer Applic. Biol. Sci. 12, 357-358.
    • (1996) Computer Applic. Biol. Sci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 23
    • 14644430471 scopus 로고    scopus 로고
    • ProbCons: Probabilistic consistency-based multiple sequence alignment
    • DOI 10.1101/gr.2821705
    • Do, C.B., Mahabhashyam, M.S., Brudno, M., and Batzoglou, S. (2005) ProbCons: probabilistic consistency-based multiple-sequence alignment. Genome Res. 15, 330-340. (Pubitemid 40309398)
    • (2005) Genome Research , vol.15 , Issue.2 , pp. 330-340
    • Do, C.B.1    Mahabhashyam, M.S.P.2    Brudno, M.3    Batzoglou, S.4
  • 24
    • 0031764045 scopus 로고    scopus 로고
    • The serine, threonine, and/or tyrosine-specific protein kinases and protein phosphatases of prokaryotic organisms: A family portrait
    • DOI 10.1016/S0168-6445(98)00015-1, PII S0168644598000151
    • Shi, L., Potts, M., and Kennelly, P.J. (1998) The serine, threonine, and/or tyrosinespecific protein kinases and protein phosphatases of prokaryotic organisms: a family portrait. FEMS Microbiol. Rev. 22, 229-253. (Pubitemid 28557044)
    • (1998) FEMS Microbiology Reviews , vol.22 , Issue.4 , pp. 229-253
    • Shi, L.1    Potts, M.2    Kennelly, P.J.3
  • 25
    • 0037314247 scopus 로고    scopus 로고
    • POLTERGEIST encodes a protein phosphatase 2C that regulates CLAVATA pathways controlling stem cell identity at Arabidopsis shoot and flower meristems
    • DOI 10.1016/S0960-9822(03)00042-3, PII S0960982203000423
    • Yu, L.P., Miller, A.K., and Clark, S.E. (2003) POLTERGEIST encodes a protein phosphatase 2C that regulates CLAVATA pathways controlling stem cell identity at Arabidopsis shoot and flower meristems. Curr. Biol. 13, 179-188. (Pubitemid 36178295)
    • (2003) Current Biology , vol.13 , Issue.3 , pp. 179-188
    • Yu, L.P.1    Miller, A.K.2    Clark, S.E.3
  • 26
    • 0029954661 scopus 로고    scopus 로고
    • The protein phosphatase 2C (PP2C) superfamily: Detection of bacterial homologues
    • Bork, P., Brown, N.P., Hegri, H., and Schultz, J. (1996) The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues. Prot. Sci. 5, 1421-1425. (Pubitemid 26239449)
    • (1996) Protein Science , vol.5 , Issue.7 , pp. 1421-1425
    • Bork, P.1    Brown, N.P.2    Hegyi, H.3    Schultz, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.