Erratum: Pseudorotation of natural and chemically modified biological phosphoranes: Implications for RNA catalysis (ChemPhysChem (2004) 5 (1045-1049) DOI: 10.1002/cphc.200400091);Pseudorotation of natural and chemically modified biological phosphoranes: Implications for RNA catalysis

ChemPhysChem

Volumn 5, Issue 7, 2004, Pages 1045-1049

  Silva López, Carlos ^b,c   Nieto Faza, Olalla ^b   Gregersen, Brent A ^a   Lopez, Xabier ^c   De Lera, Angel R ^b   York, Darrin M ^a  

^a University of Minnesota   (United States)

^b UNIVERSITY OF VIGO   (Spain)

^c UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

Author keywords

Density functional calculations; Model systems; Phosphorane intermediates; Pseudorotation; RNA transphosphorylation

Indexed keywords

CATALYSIS; DENSITY FUNCTIONAL THEORY; REACTION INTERMEDIATES;

CATALYTIC MECHANISMS; CHEMICALLY MODIFIED; MODEL SYSTEM; MONITORING CHANGE; PHOSPHATE OXYGEN; PHOSPHORANES; PSEUDOROTATION; TRANSPHOSPHORYLATION;

RNA;

OXYGEN; OXYPHOSPHORANE; PHOSPHATE; PHOSPHORANE DERIVATIVE; RNA; SULFUR; THIOPHOSPHORANE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CHEMICAL MODIFICATION; CHEMICAL REACTION; DENSITY FUNCTIONAL THEORY; ENERGY; GEOMETRY; PHOSPHORYLATION; ROTATION; THEORETICAL MODEL; THERMODYNAMICS;

EID: 3442895931     PISSN: 14394235     EISSN: None     Source Type: Journal    
DOI: 10.1002/cphc.200490049     Document Type: Erratum

References (43)

1. F. H. Westheimer, Science 1987, 235, 1173-1178.
2. D. M. Perreault, E. V. Anslyn, Angew. Chem. 1997, 109, 470-490; Angew. Chem. Int. Ed. 1997, 36, 432-450.
3. D. M. Perreault, E. V. Anslyn, Angew. Chem. 1997, 109, 470-490; Angew. Chem. Int. Ed. 1997, 36, 432-450.
4. D.-M. Zhou, K. Taira, Chem. Rev. 1998, 98, 991-1026.
5. M. Oivanen, S. Kuusela, H. Lönnberg, Chem. Rev. 1998, 98, 961-990.
6. A. Blaskó, T. C. Bruice, Acc. Chem. Res. 1999, 32, 475-484.
7. W. G. Scott, Curr. Opin. Struct. Biol. 1998, 8, 720-726.
8. E. A. Doherty, J. A. Doudna, Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 457-475.
9. J. A. Doudna, T. R. Cech, Nature 2002, 418, 222-228.
10. D. Herschlag, J. A. Piccirilli, T. R. Cech, Biochemistry 1991, 30, 4844-4854.
11. R. Breslow, W. H. Chapman, Jr., Proc. Natl. Acad. Sci. USA 1996, 93, 10018-10021.
12. I. E. Catrina, A. C. Hengge, J. Am. Chem. Soc. 1999, 121, 2156-2163.
13. A. Warshel, Computer Modeling of Chemical Reactions in Enzymes and Solutions, John Wiley and Sons, New York, 1991.
14. F. H. Westheimer, Acc. Chem. Res. 1968, 1, 70-78.
15. A. D. Becke, Phys. Rev. A. 1988, 38, 3098-3100.
16. A. D. Becke, J. Chem. Phys. 1993, 98, 5648-5652.
17. C. Lee, W. Yang, R. G. Parr, Phys. Rev. B. 1988, 37, 785-789.
18. Gaussian03 (Revision B.01), M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, V. G. Zakrzewski, J. A. Montgomery, R. E. Stratmann, J. C. Burant, S. Dapprich, J. M. Millam, A. D. Daniels, K. N. Kudin, M. C. Strain, O. Farkas, J. Tomasi, V. Barone, M. Cossi, R. Cammi, B. Mennucci, C. Pomelli, C. Adamo, S. Clifford, J. Ochterski, G. A. Petersson, P. Y. Ayala, Q. Cui, K. Morokuma, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. Cioslowski, J. V. Ortiz, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. Gomperts, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, C. Gonzalez, M. Challacombe, P. M. W. Gill, B. G. Johnson, W. Chen, M. W. Wong, J. L. Andres, M. Head-Gordon, E. S. Replogle, J. A. Pople, Gaussian, Inc., Pittsburgh, PA, 2003.
19. K. Range, M. J. McGrath, X. Lopez, D. M. York, J. Am. Chem. Soc. 2003, in press.
20. T. Mineva, N. Russo, E. Sicilia, J. Comput. Chem. 1998, 19, 290-299.
21. M. Cossi, G. Scalmani, N. Rega, V. Barone, J. Chem. Phys. 2002, 117, 43-54.
22. A. Klamt, V. Jonas, T. Bürger, J. C. W. Lohrenz, J. Phys. Chem. A 1998, 102, 5074-5085.
23. V. Barone, M. Cossi, J. Phys. Chem. A 1998, 702, 1995-2001.
24. V. Barone, M. Cossi, J. Tomasi, J. Chem. Phys. 1997, 107, 3210-3221.
25. J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, D. G. Truhlar, Theor. Chem. Acc, 1999, 103, 9-63.
26. J. D. Xidos, J. Li, J. D. Thompson, G. D. Hawkins, P. D. Winget, T. Zhu, D. Rinaldi, D. A. Liotard, C. J. Cramer, D. G. Truhlar, M. J. Frisch, MN-GSM, version 1.8., University of Minnesota, Minneapolis, MN 55455-0431, 2001.
27. A. Caligiana, V. Aquilanti, R. Burcl, N. C. Handy, D. P. Tew, Chem. Phys. Lett. 2003, 369, 335-344.
28. C. Daul, M. Frioud, O. Schafer, A. Selloni, Chem. Phys. Lett. 1996, 262, 74-79.
29. X. Lopez, M. Schaefer, A. Dejaegere, M. Karplus, J. Am. Chem. Soc. 2002, 124, 5010-5018.
30. X. Lopez, D. M. York, A. Dejaegere, M. Karplus, Int. J. Quantum Chem. 2002, 86, 10-26.
31. K. Range, M. J. McGrath, X. Lopez, D. M. York, J. Am. Chem. Soc. 2004, 126, 1654-1665.
32. T. Uchimaru, M. Uebayasi, T. Hirose, S. Tsuzuki, A. Yliniemelä, K. Tanabe, K. Taira, J. Org. Chem. 1996, 61, 1599-1608.
33. S. L. Buchwald, D. H. Pliura, J. R. Knowles, J. Am. Chem. Soc. 1984, 106, 4916-4922.
34. A. C. Hengge, Acc. Chem. Res. 2002, 35, 105-112.
35. I. E. Catrina, A. C. Hengge, J. Am. Chem. Soc. 2003, 125, 7546-7552.
36. C. Lim, P. Tole, J. Phys. Chem. 1992, 96, 5217-5219.
37. T. Uchimaru, W. J. Stec, S. Tsuzuki, T. Hirose, K. Tanabe, K. Taira, Chem. Phys. Lett. 1996, 263, 691-696.
38. R. Kluger, F. Covitz, E. Dennis, L. D. Williams, F. H. Westheimer, J. Am. Chem. Soc. 1969, 91, 6066-6072.
39. X. Lopez, D. M. York, A. Dejaegere, M. Karplus, unpublished results, 2004.
40. B.A. Gregersen, X. Lopez, D. M. York, J. Am. Chem. Soc. 2003, 125, 7178-7179.
41. D. A. Usher, D. I. Richardson, Jr., D. G. Oakenfull, J. Am. Chem. Soc. 1970, 92, 4699-4712.
42. H. Almer, R. Strömberg, Tetrahedron Lett. 1991, 32, 3723-3726.
43. J. Florián, M. Štrajbl, A. Warshel, J. Am. Chem. Soc. 1998, 120, 7959-7966.