-
1
-
-
0027190754
-
Evaluation of secondary structure of proteins from UV circular dichroism using an unsupervised learning neural network
-
Andrade, M.A., Chacon, P., Merelo, J.J., and Moran, F. 1993. Evaluation of secondary structure of proteins from UV circular dichroism using an unsupervised learning neural network. Protein Eng. 6: 383-390.
-
(1993)
Protein Eng
, vol.6
, pp. 383-390
-
-
Andrade, M.A.1
Chacon, P.2
Merelo, J.J.3
Moran, F.4
-
2
-
-
0021874034
-
Plasmids pEMBLY: New single-stranded shuttle vectors for the recovery and analysis of yeast DNA sequences
-
doi:10.1016/0378-1119(85)90154-4
-
Baldari, C., and Cesareni, G. 1985. Plasmids pEMBLY: new single-stranded shuttle vectors for the recovery and analysis of yeast DNA sequences. Gene, 35: 27-32. doi:10.1016/0378-1119(85)90154-4.
-
(1985)
Gene
, vol.35
, pp. 27-32
-
-
Baldari, C.1
Cesareni, G.2
-
3
-
-
0034805505
-
Resolving the individual components of a pH-induced conformational change
-
Blouin, C., Guillemette, J.G., and Wallace, C.J.A. 2001. Resolving the individual components of a pH-induced conformational change. Biophys. J. 81: 2331-2338.
-
(2001)
Biophys. J
, vol.81
, pp. 2331-2338
-
-
Blouin, C.1
Guillemette, J.G.2
Wallace, C.J.A.3
-
4
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
doi:10.1016/0022-2836(90)90200-6
-
Bushnell, G.W., Louie, G.V., and Brayer, G.D. 1990. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214: 585-595. doi:10.1016/0022-2836(90)90200-6.
-
(1990)
J. Mol. Biol
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
5
-
-
0028939217
-
Studies of 8-azido-ATP adducts reveal two mechanisms by which ATP binding to cytochrome c could inhibit respiration
-
doi:10.1021/bi00008a036
-
Craig, D.B., and Wallace, C.J.A. 1995. Studies of 8-azido-ATP adducts reveal two mechanisms by which ATP binding to cytochrome c could inhibit respiration. Biochemistry, 34: 2686-2693. doi:10.1021/bi00008a036.
-
(1995)
Biochemistry
, vol.34
, pp. 2686-2693
-
-
Craig, D.B.1
Wallace, C.J.A.2
-
7
-
-
0001217574
-
The preparation and some properties of cytochrome f
-
Davenport, H.E., and Hill, R. 1952. The preparation and some properties of cytochrome f. Proc. R. Soc. Lond. B. Biol. Sci. 139: 327-345.
-
(1952)
Proc. R. Soc. Lond. B. Biol. Sci
, vol.139
, pp. 327-345
-
-
Davenport, H.E.1
Hill, R.2
-
8
-
-
0018264560
-
Definition of cytochrome c binding domains by chemical modification. III. Kinetics of reaction of carboxydinitrophenyl cytochromes c with cytochrome c oxidase
-
Ferguson-Miller, S., Brautigan, D.L., and Margoliash, E. 1978. Definition of cytochrome c binding domains by chemical modification. III. Kinetics of reaction of carboxydinitrophenyl cytochromes c with cytochrome c oxidase. J. Biol. Chem. 253: 149-159.
-
(1978)
J. Biol. Chem
, vol.253
, pp. 149-159
-
-
Ferguson-Miller, S.1
Brautigan, D.L.2
Margoliash, E.3
-
9
-
-
0001370438
-
Identification of Lys-79 as an iron ligand in one form of alkaline yeast iso-1-cytochrome c
-
doi:10.1021/ja00069a062
-
Ferrer, J.C., Guillemette, J.G., Bogumil, R., Inglis, S.C. Smith, M., and Mauk, G.A. 1993. Identification of Lys-79 as an iron ligand in one form of alkaline yeast iso-1-cytochrome c. J. Am. Chem. Soc. 115: 7507-7508. doi:10.1021/ja00069a062.
-
(1993)
J. Am. Chem. Soc
, vol.115
, pp. 7507-7508
-
-
Ferrer, J.C.1
Guillemette, J.G.2
Bogumil, R.3
Inglis, S.C.4
Smith, M.5
Mauk, G.A.6
-
10
-
-
0028954118
-
Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure
-
doi:10.1002/yea.320110408
-
Gietz, R.D., Schiestl, R., Willems, A., and Woods, R. 1995. Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast, 11: 355-360. doi:10.1002/yea.320110408.
-
(1995)
Yeast
, vol.11
, pp. 355-360
-
-
Gietz, R.D.1
Schiestl, R.2
Willems, A.3
Woods, R.4
-
11
-
-
0030042763
-
Methods to estimate the conformation of proteins and polypeptides from circular dichroism data
-
doi:10.1006/abio.1996.0084
-
Greenfield, N.J. 1996. Methods to estimate the conformation of proteins and polypeptides from circular dichroism data. Anal. Biochem. 235: 1-10. doi:10.1006/abio.1996.0084.
-
(1996)
Anal. Biochem
, vol.235
, pp. 1-10
-
-
Greenfield, N.J.1
-
12
-
-
0030967237
-
Thermal denaturation of iso-1-cytochrome c variants: Comparison with solvent denaturation
-
Herrmann, L.M., and Bowler, B.E. 1997. Thermal denaturation of iso-1-cytochrome c variants: comparison with solvent denaturation. Protein Sci. 6: 657-665.
-
(1997)
Protein Sci
, vol.6
, pp. 657-665
-
-
Herrmann, L.M.1
Bowler, B.E.2
-
13
-
-
0025773086
-
Analysis of the Invariant Phe82 Residue of Yeast Iso-1-cytochrome c by site-directed mutagenesis using a phagemid yeast shuttle vector
-
Inglis, S.C., Guillemette, J.G., Johnson, J.A., and Smith, M. 1991. Analysis of the Invariant Phe82 Residue of Yeast Iso-1-cytochrome c by site-directed mutagenesis using a phagemid yeast shuttle vector. Protein Eng. 4: 569-574.
-
(1991)
Protein Eng
, vol.4
, pp. 569-574
-
-
Inglis, S.C.1
Guillemette, J.G.2
Johnson, J.A.3
Smith, M.4
-
14
-
-
0016390528
-
Guanidine hydrochloride and acid denaturation of horse, cow, and Candida krusei cytochrome c
-
doi:10.1021/bi00703a036
-
Knapp, J.A., and Pace, C.N. 1974. Guanidine hydrochloride and acid denaturation of horse, cow, and Candida krusei cytochrome c. Biochemistry, 13: 1289-1294. doi:10.1021/bi00703a036.
-
(1974)
Biochemistry
, vol.13
, pp. 1289-1294
-
-
Knapp, J.A.1
Pace, C.N.2
-
15
-
-
0031836877
-
Thermodynamic volume cycles for electron transfer in the cytochrome c oxidase and for the binding of cytochrome c to cytochrome c oxidase
-
Kornblatt, J.A., Kornblatt, M.J., Rajotte, I., Bon Hoa, G.H., and Kahn, P.C. 1998. Thermodynamic volume cycles for electron transfer in the cytochrome c oxidase and for the binding of cytochrome c to cytochrome c oxidase. Biophys. J. 75: 435-444.
-
(1998)
Biophys. J
, vol.75
, pp. 435-444
-
-
Kornblatt, J.A.1
Kornblatt, M.J.2
Rajotte, I.3
Bon Hoa, G.H.4
Kahn, P.C.5
-
16
-
-
0025146477
-
High-resolution refinement of yeast iso-1-cytochrome c and comparisons with other eukaryotic cytochromes c
-
doi:10.1016/0022-2836(90)90197-T
-
Louie, G.V., and Brayer, G.D. 1990. High-resolution refinement of yeast iso-1-cytochrome c and comparisons with other eukaryotic cytochromes c. J. Mol. Biol. 214: 527-555. doi:10.1016/0022-2836(90)90197-T.
-
(1990)
J. Mol. Biol
, vol.214
, pp. 527-555
-
-
Louie, G.V.1
Brayer, G.D.2
-
17
-
-
0022004980
-
Electron transfers in chemistry and biology
-
Marcus, R., and Sutin, N. 1985. Electron transfers in chemistry and biology. Biochim. Biophys. Acta, 811: 265-312.
-
(1985)
Biochim. Biophys. Acta
, vol.811
, pp. 265-312
-
-
Marcus, R.1
Sutin, N.2
-
18
-
-
0019481490
-
In vitro synthesis and posttranslational uptake of cytochrome c into isolated mitochondria: Role of a specific addressing signal in the apocytochrome
-
doi:10.1073/pnas.78.7.4368
-
Matsuura, S., Arpin, M., Hannum, C., Margoliash, E., Sabatini, D., and Morimoto, T. 1981. In vitro synthesis and posttranslational uptake of cytochrome c into isolated mitochondria: role of a specific addressing signal in the apocytochrome. Proc. Natl. Acad. Sci. U.S.A. 78: 4368-4372. doi:10.1073/pnas.78.7.4368.
-
(1981)
Proc. Natl. Acad. Sci. U.S.A
, vol.78
, pp. 4368-4372
-
-
Matsuura, S.1
Arpin, M.2
Hannum, C.3
Margoliash, E.4
Sabatini, D.5
Morimoto, T.6
-
19
-
-
0003618850
-
-
Springer-Verlag, Berlin
-
Moore, G.R., and Pettigrew, G.W. 1990. Cytochrome c: evolutionary, structural and physicochemical aspects, Springer-Verlag, Berlin.
-
(1990)
Cytochrome c: Evolutionary, structural and physicochemical aspects
-
-
Moore, G.R.1
Pettigrew, G.W.2
-
20
-
-
0029882043
-
Loop replacement and random mutagenesis of omega-loop D, residues 70-84, in iso-1-cytochrome c
-
Mulligan-Pullyblank, P., Spitzer, J.S., Gilden, B.M., and Fetrow, J.S. 1996. Loop replacement and random mutagenesis of omega-loop D, residues 70-84, in iso-1-cytochrome c. J. Biol. Chem. 271: 8633-8645.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 8633-8645
-
-
Mulligan-Pullyblank, P.1
Spitzer, J.S.2
Gilden, B.M.3
Fetrow, J.S.4
-
21
-
-
0015914792
-
Oxidation-reduction potential of the ferro-ferricyanide system in buffer solutions
-
O'Reilly, J.E. 1973. Oxidation-reduction potential of the ferro-ferricyanide system in buffer solutions. Biochim. Biophys. Acta, 292: 509-515.
-
(1973)
Biochim. Biophys. Acta
, vol.292
, pp. 509-515
-
-
O'Reilly, J.E.1
-
22
-
-
0033621360
-
Definition of the interaction domain for cytochrome c on cytochrome c oxidase: III. Prediction of the docked complex by a complete, systematic approach
-
doi:10.1074/jbc.274.53. 38051
-
Roberts, V.A., and Pique, M.E. 1999. Definition of the interaction domain for cytochrome c on cytochrome c oxidase: III. Prediction of the docked complex by a complete, systematic approach. J. Biol. Chem. 274: 38051-38060. doi:10.1074/jbc.274.53. 38051.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 38051-38060
-
-
Roberts, V.A.1
Pique, M.E.2
-
23
-
-
0021779081
-
Turns in peptides and proteins
-
Rose, G.D., Gierasch, L.M., and Smith, J.A. 1985. Turns in peptides and proteins. Adv. Protein Chem. 37: 1-109.
-
(1985)
Adv. Protein Chem
, vol.37
, pp. 1-109
-
-
Rose, G.D.1
Gierasch, L.M.2
Smith, J.A.3
-
24
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. Vol. 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular cloning: A laboratory manual
, vol.1
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
25
-
-
0024799254
-
High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
-
doi:10.1007/BF00340712
-
Schiestl, R.H., and Gietz, R.D. 1989. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr. Genet. 16: 339-346. doi:10.1007/BF00340712.
-
(1989)
Curr. Genet
, vol.16
, pp. 339-346
-
-
Schiestl, R.H.1
Gietz, R.D.2
-
26
-
-
0025298396
-
Amino acid sequence requirements for the association of apocytochrome c with mitochondria
-
doi:10.1073/pnas.87.15.5729
-
Sprinkle, J.R., Hakvoort, T.B.M., Koshy, T.I., and Miller, D.D. 1990. Amino acid sequence requirements for the association of apocytochrome c with mitochondria. Proc. Natl. Acad. Sci. U.S.A. 87: 5729-5733. doi:10.1073/pnas.87.15.5729.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A
, vol.87
, pp. 5729-5733
-
-
Sprinkle, J.R.1
Hakvoort, T.B.M.2
Koshy, T.I.3
Miller, D.D.4
-
27
-
-
0027447099
-
A self-consistent method for the analysis of protein secondary structures from circular dichroism
-
doi:10.1006/abio.1993.1079
-
Sreerama, N., and Woody, R.W. 1993. A self-consistent method for the analysis of protein secondary structures from circular dichroism. Anal. Biochem. 209: 32-44. doi:10.1006/abio.1993.1079.
-
(1993)
Anal. Biochem
, vol.209
, pp. 32-44
-
-
Sreerama, N.1
Woody, R.W.2
-
28
-
-
0034737476
-
Definition of the interaction domain for cytochrome c on the cytochrome bc1 complex
-
doi:10.1074/jbc.275.13.9587
-
Tian, H., Sadoski, R., Zhang, L., Yu, C.-A., Yu, L., Durham, B., and Millett, F. 2000. Definition of the interaction domain for cytochrome c on the cytochrome bc1 complex. J. Biol. Chem. 275: 9587-9595. doi:10.1074/jbc.275.13.9587.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 9587-9595
-
-
Tian, H.1
Sadoski, R.2
Zhang, L.3
Yu, C.-A.4
Yu, L.5
Durham, B.6
Millett, F.7
-
29
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
doi:10.1110/ps.4210102
-
Uversky, V.N. 2002. Natively unfolded proteins: a point where biology waits for physics. Protein Sci. 11: 739-756. doi:10.1110/ps.4210102.
-
(2002)
Protein Sci
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
30
-
-
0021378944
-
The effect of complete or specific partial acetimidylation on the biological properties of cytochrome c and cytochrome c-T
-
Wallace, C.J. 1984a. The effect of complete or specific partial acetimidylation on the biological properties of cytochrome c and cytochrome c-T. Biochem. J. 217: 595-599.
-
(1984)
Biochem. J
, vol.217
, pp. 595-599
-
-
Wallace, C.J.1
-
31
-
-
0021382591
-
Modulation of the alkaline transition in cytochrome c and cytochrome c-T by full or specific partial acetmidylation
-
Wallace, C.J. 1984b. Modulation of the alkaline transition in cytochrome c and cytochrome c-T by full or specific partial acetmidylation. Biochem. J. 217: 601-604.
-
(1984)
Biochem. J
, vol.217
, pp. 601-604
-
-
Wallace, C.J.1
-
32
-
-
0026674590
-
Functional role of heme ligation in cytochrome c
-
Wallace, C.J.A., and Clark-Lewis, I. 1992. Functional role of heme ligation in cytochrome c. J. Biol. Chem. 267: 3852-3861.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 3852-3861
-
-
Wallace, C.J.A.1
Clark-Lewis, I.2
-
33
-
-
0030781309
-
A rationale for the absolute conservation of Asn70 and Pro71 in mitochondrial cytochromes c suggested by protein engineering
-
doi:10.1021/bi971595m
-
Wallace, C.J.A., and Clark-Lewis, I. 1997. A rationale for the absolute conservation of Asn70 and Pro71 in mitochondrial cytochromes c suggested by protein engineering. Biochemistry, 36: 14733-14740. doi:10.1021/bi971595m.
-
(1997)
Biochemistry
, vol.36
, pp. 14733-14740
-
-
Wallace, C.J.A.1
Clark-Lewis, I.2
-
34
-
-
0023396036
-
On the relationship between oxidation-reduction potential and biological activity in cytochrome c analogues
-
Wallace, C.J.A., and Proudfoot, A.E.I. 1987. On the relationship between oxidation-reduction potential and biological activity in cytochrome c analogues. Biochem. J. 245: 773-779.
-
(1987)
Biochem. J
, vol.245
, pp. 773-779
-
-
Wallace, C.J.A.1
Proudfoot, A.E.I.2
-
35
-
-
0022805153
-
Cytochrome c chimerae from natural and synthetic fragments: Significance of the biological properties
-
doi:10.1002/bip.360251107
-
Wallace, C.J.A., Corradin, G., Marchiori, F., and Borin, G. 1986. Cytochrome c chimerae from natural and synthetic fragments: significance of the biological properties. Biopolymers, 25: 2121-2132. doi:10.1002/bip.360251107.
-
(1986)
Biopolymers
, vol.25
, pp. 2121-2132
-
-
Wallace, C.J.A.1
Corradin, G.2
Marchiori, F.3
Borin, G.4
-
36
-
-
0024437746
-
Substitutions engineered by chemical synthesis at three conserved sites in mitochondrial cytochrome c. Thermodynamic and functional consequences
-
Wallace, C.J.A., Mascagni, P., Chait, B.T., Collawn, J.F., Paterson, Y., Proudfoot, A.E.I., and Kent, B.S.H. 1989. Substitutions engineered by chemical synthesis at three conserved sites in mitochondrial cytochrome c. Thermodynamic and functional consequences. J. Biol. Chem. 264: 15199-15209.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 15199-15209
-
-
Wallace, C.J.A.1
Mascagni, P.2
Chait, B.T.3
Collawn, J.F.4
Paterson, Y.5
Proudfoot, A.E.I.6
Kent, B.S.H.7
-
37
-
-
0006615038
-
Synergy of semisynthesis and site-directed mutagenesis: Manipulating genes to create site for autocatalytic protein fragment relegation
-
Edited by: R.H. Angeletti. Academic Press Inc, San Diego, CA. pp
-
Wallace, C.J.A., Guillemette, J.G., Hibiya, Y., and Smith, M. 1992b. Synergy of semisynthesis and site-directed mutagenesis: manipulating genes to create site for autocatalytic protein fragment relegation. In: Techniques in protein chemistry III. Edited by: R.H. Angeletti. Academic Press Inc., San Diego, CA. pp. 209-217.
-
(1992)
Techniques in protein chemistry III
, pp. 209-217
-
-
Wallace, C.J.A.1
Guillemette, J.G.2
Hibiya, Y.3
Smith, M.4
-
38
-
-
0033621332
-
Definition of the interaction domain for cytochrome c on cytochrome c oxidase: II. Rapid kinetic analysis of electron transfer from cytochrome c to rhodobacter sphaeroides cytochrome oxidase surface mutants
-
doi:10.1074/jbc.274.53.38042
-
Wang, K., Zhen, Y., Sadoski, R., Grinnell, S., Geren, L., Ferguson-Miller, S., and Millett, F. 1999. Definition of the interaction domain for cytochrome c on cytochrome c oxidase: II. Rapid kinetic analysis of electron transfer from cytochrome c to rhodobacter sphaeroides cytochrome oxidase surface mutants. J. Biol. Chem. 274: 38042-38050. doi:10.1074/jbc.274.53.38042.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 38042-38050
-
-
Wang, K.1
Zhen, Y.2
Sadoski, R.3
Grinnell, S.4
Geren, L.5
Ferguson-Miller, S.6
Millett, F.7
-
39
-
-
3242877618
-
Dichroweb, an online server for protein secondary structure analyses from circular dichroism spectroscopic data
-
doi:10.1093/nar/gkh371
-
Whitmore, L., and Wallace, B.A. 2004. Dichroweb, an online server for protein secondary structure analyses from circular dichroism spectroscopic data. Nucleic Acids Res. 32: W668-W673. doi:10.1093/nar/gkh371.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Whitmore, L.1
Wallace, B.A.2
-
40
-
-
0024279235
-
Analysis and prediction of the different types of beta-turn in proteins
-
doi:10.1016/0022-2836(88)90103-9
-
Wilmot, C.M., and Thornton, J.M. 1988. Analysis and prediction of the different types of beta-turn in proteins. J. Mol. Biol. 203: 221-232. doi:10.1016/0022-2836(88)90103-9.
-
(1988)
J. Mol. Biol
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
41
-
-
0034255443
-
A new method for the determination of stability parameters of proteins from their heat-induced denaturation curves
-
doi:10.1006/abio.2000.4641
-
Yadav, S., and Ahmad, F. 2000. A new method for the determination of stability parameters of proteins from their heat-induced denaturation curves. Anal. Biochem. 283: 207-213. doi:10.1006/abio.2000.4641.
-
(2000)
Anal. Biochem
, vol.283
, pp. 207-213
-
-
Yadav, S.1
Ahmad, F.2
|