Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross

Theoretical and Applied Genetics

Volumn 115, Issue 2, 2007, Pages 179-186

  Matsubara, K ^a   Ando, T ^b   Mizubayashi, T ^b   Ito, S ^b   Yano, M ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b Institute of the Society for Techno innovation of Agriculture   (Japan)

Author keywords

Epistatic interaction; Linkage mapping; Oryza sativa; Poor growth; QTL mapping

Indexed keywords

CROPS; GENES; GROWTH KINETICS;

EPISTATIC INTERACTION; LINKAGE MAPPING; ORYZA SATIVA; POOR GROWTH; QTL MAPPING;

GENETIC ENGINEERING;

ARTICLE; CHROMOSOME MAP; CROSS BREEDING; GENE; GENETIC LINKAGE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HYBRIDIZATION; PLANT CHROMOSOME; QUANTITATIVE TRAIT LOCUS; RECESSIVE GENE; RICE;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; GENES, PLANT; GENES, RECESSIVE; HYBRIDIZATION, GENETIC; LINKAGE (GENETICS); ORYZA SATIVA; QUANTITATIVE TRAIT LOCI;

JAPONICA; ORYZA SATIVA;

EID: 34347361616     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0553-x     Document Type: Article

References (51)

1. Amemiya A, Akemine H (1963) Studies on embryo culture in rice plant. 3. Biochemical genetic studies on the root growth inhibiting complementary lethals in rice plant. Bull Nat Inst Agr Sci D10:139-226
2. Ashikari M, Sakakibara H, Lin SY, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M (2005) Cytokinin oxidase regulates rice grain production. Science 309:741-745
3. Basten CJ, Weir BS, Zeng ZB (2005) QTL cartographer, ver. 1.17. Department of Statistics, North Carolina State University, Raleigh
4. Brondani C, Rangel PHN, Brondani RPV, Ferreira ME (2002) QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers. Theor Appl Genet 104:1192-1203
5. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
6. Coyne JA, Orr HA (2004) Speciation. Sinauer, Sunderland, pp 247-281
7. Dobzhansky T (1936) Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids. Genetics 21:113-135
8. Dobzhansky T (1970) Genetics of the evolutionary process. Columbia University Press, New York, pp 311-350
9. Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142:285-294
10. Ebitani T, Takeuchi Y, Nonoue Y, Yamamoto T, Takeuchi K, Yano M (2005) Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari'. Breed Sci 55:65-73
11. Fukuoka S, Namai H, Okuno K (1998) RFLP mapping of the genes controlling hybrid breakdown in rice (Oryza sativa L.). Theor Appl Genet 97:446-449
12. Fukuoka S, Newingham MCV, Ishtiaq M, Nagamine T, Kawase M, Okuno K (2005) Identification and mapping of two new loci for hybrid breakdown in cultivated rice. Rice Genet Newsl 22:29-31
13. Hittalmani S, Shashidhar HE, Bagali PG, Huang N, Sidhu JS, Singh VP, Khush GS (2002) Molecular mapping of quantitative trait loci for plant growth, yield and yield-related traits across three diverse locations in a doubled haploid rice population. Euphytica 125:207-214
14. Ichitani K, Fukuta Y, Taura S, Sato M (2001) Chromosomal location of Hwc2, one of the complementary hybrid weakness genes, in rice. Plant Breed 120:523-525
15. Kobayashi A, Koga Y, Uchiyamada H, Horiuchi H, Miura K, Okuno K, Fujita Y, Uehara Y, Ishizaka S, Nakagahra M, Yamada T (1990) Breeding a new rice variety 'Habataki'. Bull Hokuriku Natl Agric Exp Stn 32:65-84
16. Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M (2006) An SNP caused loss of seed shattering during rice domestication. Science 312:1392-1396
17. Kubo T, Yoshimura A (2002) Genetic basis of hybrid breakdown in a japonica/indica cross of rice, Oryza sativa L. Theor Appl Genet 105:906-911
18. Kubo T, Yoshimura A (2005) Epistasis underlying female sterility detected in hybrid breakdown in a japonica-indica cross of rice (Oryza sativa L.). Theor Appl Genet 110:346-355
19. Kubo T, Aida Y, Nakamura K, Tsunematsu H, Doi K, Yoshimura A (2002) Reciprocal chromosome segment substitution series derived from japonica and indica cross of rice (Oryza sativa L.). Breed Sci 52:319-325
20. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
21. Li Z, Pinson SRM, Paterson AH, Park WD, Stansel JW (1997) Genetics of hybrid sterility and hybrid breakdown in an interspecific rice (Oryza sativa L.) population. Genetics 145:1139-1148
22. Liao CY, Wu P, Hu B, Yi KK (2001) Effects of genetic background and environment on QTLs and epistasis for rice (Oryza sativa L.) panicle number. Theor Appl Genet 103:104-111
23. Lin HX, Qian HR, Zhuang JY, Lu J, Min SK, Xiong ZM, Huang N, Zheng KL (1996) RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L.). Theor Appl Genet 92:920-927
24. Luo LJ, Li ZK, Mei HW, Shu QY, Tabien R, Zhong DB, Ying CS, Stansel JW, Khush GS, Paterson AH (2001) Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. II. Grain yield components. Genetics 158:1755-1771
25. Lynch M, Force AG (2000) The origin of interspecific genomic incompatibility via gene duplication. Am Nat 156:590-605
26. Lynch M, Walsh B (1998) Genetics and analysis of quantitative traits. Sinauer, Sunderland, pp 379-429
27. Matsubara K, Khin-Thidar, Sano Y (2003) A gene block causing cross-incompatibility hidden in wild and cultivated rice. Genetics 165:343-352
28. Matsubara K, Ito S, Nonoue Y, Ando T, Yano M (2007) A novel gene for hybrid breakdown found in a cross between japonica and indica cultivars in rice. Rice Genet Newsl (in press)
29. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Lincoln S (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9:199-207
30. Moyle LC, Graham EB (2005) Genetics of hybrid incompatibility between Lycopersicon esculentum and L. hirsutum. Genetics 169:355-373
31. Muller HJ (1942) Isolating mechanisms, evolution, and temperature. Biol Symp 6:71-125
32. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325
33. Nagata K, Fukuta Y, Shimizu H, Yagi T, Terao T (2002) Quantitative trait loci for sink size and ripening traits in rice (Oryza sativa L.). Breed Sci 52:259-273
34. Obara M, Sato T, Sasaki S, Kashiba K, Nagano A, Nakamura I, Ebitani T, Yano M, Yamaya T (2004) Identification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice. Theor Appl Genet 110:1-11
35. Oka HI (1957) Phylogenetic differentiation of cultivated rice. XV. Complementary lethal genes in rice. Jpn J Genet 32:83-87
36. Oka HI (1988) Origin of cultivated rice. JSSP/Elsevier, Tokyo/Amsterdam, pp 181-209
37. Orr A (1996) Dobzhansky, Bateson, and the genetics of speciation. Genetics 144:1331-1335
38. Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat Genet 37:1141-1146
39. Sato YI, Matsuura S, Hayashi K (1984) The genetic basis of hybrid chlorosis found in a cross between Japanese native cultivars. Rice Genet Newsl 1:106-107
40. Shen YJ, Jiang H, Jin JP, Zhang ZB, Xi B, He YY, Wang G, Wang C, Qian L, Li X, Yu QB, Liu HJ, Chen DH, Gao JH, Huang H, Shi TL, Yang ZN (2004) Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol 135:1198-1205
41. Sokal RR, Rohlf FJ (1995) Biometry, 3rd edn. Freeman, San Francisco, pp 207-271
42. Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ (2006) Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background. Theor Appl Genet 112:570-580
43. 2 population of indica/japonica cross in rice. Theor Appl Genet 91:825-829
44. Xiao J, Li J, Grandillo S, Ahn SN, Yuan L, Tanksley SD, McCouch SR (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150:899-909
45. Xu JL, Yu SB, Luo LJ, Zhong DB, Mei HW, Li ZK (2004) Molecular dissection of the primary sink size and its related traits in rice. Plant Breed 123:43-50
46. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473-2483
47. Yoon DB, Kang KH, Kim HJ, Ju HG, Kwon SJ, Jeong OY, Ahn SN (2006) Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and O. sativa japonica cultivar Hwaseongbyeo. Theor Appl Genet 112:1052-1062
48. You A, Lu X, Jin H, Ren X, Liu K, Yang G, Yang H, Zhu L, He G (2006) Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics 172:1287-1300
49. Zeng Z (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972-10976
50. Zeng Z (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468
51. Zhuang JY, Lin HX, Lu J, Qian HR, Hittalmani S, Huang N, Zheng KL (1997) Analysis of QTL × environment interaction for yield components and plant height in rice. Theor Appl Genet 95:799-808