Consensus recommendations to promote and advance predictive systems toxicology and toxicogenomics

Environmental and Molecular Mutagenesis

Volumn 48, Issue 5, 2007, Pages 400-403

  Waters, Michael ^a   Yauk, Carole ^b  

^a INTEGRATED LABORATORY SYSTEMS   (United States)

^b HEALTH CANADA   (Canada)

Author keywords

Collaborative science; Open access; Systems biology; Toxicogenomics

Indexed keywords

CANADA; CONFERENCE PAPER; CONSENSUS; DATA BASE; ENVIRONMENTAL MONITORING; EPIGENETICS; GENE EXPRESSION; INFORMATION SCIENCE; METABOLOMICS; PROTEOMICS; TOXICOGENETICS;

CONSENSUS; GUIDELINES; SYSTEMS BIOLOGY; TOXICOGENETICS; TOXICOLOGY;

ANIMALIA;

EID: 34347347977     PISSN: 08936692     EISSN: 10982280     Source Type: Journal    
DOI: 10.1002/em.20289     Document Type: Conference Paper

References (16)

1. Baker VA, Harries HM, Waring JF, Duggan CM, Ni HA, Jolly RA, Yoon LW, De Souza AT, Schmid JE, Brown RH, Ulrich RG, Rockett JC. 2004. Clofibrate-induced gene expression changes in rat liver: A cross-laboratory analysis using membrane cDNA arrays. Environ Health Perspect 112:428-438.
2. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, et al. 2002. Standards for microarray data. Science 298:539.
3. Chu TM, Deng S, Wolfinger R, Paules RS, Hamadeh HK. 2004. Cross-site comparison of gene expression data reveals high similarity. Environ Health Perspect 112:449-455.
4. Fielden MR, Zacharewski TR. 2001. Challenges and limitations of gene expression profiling in mechanistic and predictive toxicology. Toxicol Sci 60:6-10.
5. Fuscoe J, Weida T, Leming, S. QA/QC issues to air regulatory acceptance of microarray gene expression data. Environ Mol Mutagen (in press).
6. Kramer JA, Pettit SD, Amin RP, Bertram TA, Car B, Cunningham M, Curtiss SW, Davis JW, Kind C, Lawton M, et al. 2004. Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment. Environ Health Perspect 112:460-464.
7. Lindon JC, Nicholson JK, Holmes E, Antti H, Bollard ME, Ketin H, Beckonert O, Ebbels TM, Reily MD, Robertson D, et al. 2003. Contemporary issues in toxicology the role of metabonomics in toxicology and its evaluation by the COMET project. Toxicol Appl Pharmacol 187:137-146.
8. Mattes WB, Pettit SD, Sansone SA, Bushel PR, Waters MD. 2004. Database development in toxicogenomics: Issues and efforts. Environ Health Perspect 112:495-505.
9. Newton RK, Aardema M, Aubrecht J. 2004. The utility of DNA microarrays for characterizing genotoxicity. Environ Health Perspect 112:420-422.
10. Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, et al. 2006. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24:1151-1161.
11. Smith LL. 2001. Key challenges for toxicologists in the 21st century. Trends Pharmacol Sci 22:281-285.
12. Thompson KL, Afshari CA, Amin RP, Bertram TA, Car B, Cunningham M, Kind, CL, Kramer JA, Lawton M, Mirsky M, Naciff JM, Oreffo V, Pine PS, Sistare FD. 2004. Identification of platform-independent gene expression markers of cisplatin nephrotoxicity. Environ Health Perspect 112:488-494.
13. Ulrich RG, Rockett JC, Gibson GG, Pettit SD. 2004. Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression. Environ Health Perspect 112:423-427.
14. Waring JF, Ulrich RG, Flint N, Morfitt D, Kalkuhl A, Staedtler F, Lawton M, Beekman JM, Suter L. 2004. Interlaboratory evaluation of rat hepatic gene expression changes induced by methapyrilene. Environ Health Perspect 112:439-448.
15. Waters MD, Fostel JM. 2004. Toxicogenomics and systems toxicology: Aims and prospects. Nat Rev Genet 5:936-948.
16. Yauk CL, Berndt ML. 2007. A review of the literature examining the correlation among DNA microarray technologies. Environ Mol Mutagen (Epub ahead of print).