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Volumn 35, Issue 10, 2007, Pages 3192-3202

Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE (CALCIUM); ALPHA CRYSTALLIN; ALPHA INTEGRIN; CALCIUM ACTIVATED POTASSIUM CHANNEL; COLLAGEN TYPE 13; COLLAGEN TYPE 4; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN 5; ESTROGEN RECEPTOR ALPHA; FILAMIN; GAMMA GLUTAMYLTRANSFERASE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; HELMINTH RNA; INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR; LAMIN; MEMBRANE PROTEIN; NUCLEAR PROTEIN; PHOSPHOPROTEIN PHOSPHATASE; PHOSPHOPROTEIN PHOSPHATASE 2; PHOSPHOTRANSFERASE; PROTEIN TYROSINE PHOSPHATASE; RNA; RNA BINDING PROTEIN; RYANODINE RECEPTOR; S6 KINASE; TETRASPANIN; TRANSCRIPTION FACTOR; UBIQUITIN PROTEIN LIGASE E3; UNCLASSIFIED DRUG; VOLTAGE GATED POTASSIUM CHANNEL; CAENORHABDITIS ELEGANS PROTEIN; LOW DENSITY LIPOPROTEIN RECEPTOR RELATED PROTEIN; PROTEIN KINASE; SIGNAL PEPTIDE;

EID: 34250872207     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm187     Document Type: Article
Times cited : (9)

References (37)
  • 1
    • 0347623371 scopus 로고    scopus 로고
    • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    • Johnson,J.M. et al. (2003) Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science, 302 2141-2144.
    • (2003) Science , vol.302 , pp. 2141-2144
    • Johnson, J.M.1
  • 2
    • 0035036534 scopus 로고    scopus 로고
    • Kan,Z., Rouchka,E.C., Gish,W.R. and States,D.J. (2001) Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome. Res., 11, 889-900.
    • Kan,Z., Rouchka,E.C., Gish,W.R. and States,D.J. (2001) Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome. Res., 11, 889-900.
  • 3
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • Okazaki,Y. et al. (2002) Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 420, 563-573.
    • (2002) Nature , vol.420 , pp. 563-573
    • Okazaki, Y.1
  • 6
    • 18144399332 scopus 로고    scopus 로고
    • The human glucocorticoid receptor: One gene, multiple proteins and diverse responses
    • Zhou,J. and Cidlowski,J.A. (2005) The human glucocorticoid receptor: One gene, multiple proteins and diverse responses. Steroids, 70, 407-417.
    • (2005) Steroids , vol.70 , pp. 407-417
    • Zhou, J.1    Cidlowski, J.A.2
  • 7
    • 4644313938 scopus 로고    scopus 로고
    • Preferential accumulation of GABAA receptor gamma 2L, not gamma 2S, cytoplasmic loops at rat spinal cord inhibitory synapses
    • Meier,J. and Grantyn,R. (2004) Preferential accumulation of GABAA receptor gamma 2L, not gamma 2S, cytoplasmic loops at rat spinal cord inhibitory synapses. J. Physiol., 559(Pt. 2), 355-365.
    • (2004) J. Physiol , vol.559 , Issue.PART. 2 , pp. 355-365
    • Meier, J.1    Grantyn, R.2
  • 9
    • 0035896541 scopus 로고    scopus 로고
    • Differential regulation of alternatively spliced endothelial cell myosin light chain kinase isoforms by p60(Src)
    • Birukov,K.G. et al. (2001) Differential regulation of alternatively spliced endothelial cell myosin light chain kinase isoforms by p60(Src). J. Biol. Chem., 276, 8567-8573.
    • (2001) J. Biol. Chem , vol.276 , pp. 8567-8573
    • Birukov, K.G.1
  • 11
    • 33744809531 scopus 로고    scopus 로고
    • The types and prevalence of alternative splice forms
    • Zavolan,M. and van Nimwegen,E. (2006) The types and prevalence of alternative splice forms. Curr. Opin. Struct. Biol., 16, 362-367.
    • (2006) Curr. Opin. Struct. Biol , vol.16 , pp. 362-367
    • Zavolan, M.1    van Nimwegen, E.2
  • 12
    • 0033846543 scopus 로고    scopus 로고
    • Multiple splicing defects in an intronic false exon
    • Sun,H. and Chasin,L.A. (2000) Multiple splicing defects in an intronic false exon. Mol. Cell. Biol., 20, 6414-6425.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 6414-6425
    • Sun, H.1    Chasin, L.A.2
  • 13
    • 33644861283 scopus 로고    scopus 로고
    • Recognition of unknown conserved alternatively spliced exons
    • Ohler,U., Shomron,N. and Burge,C.B. (2005) Recognition of unknown conserved alternatively spliced exons. PLoS Comput. Biol., 1 113-122.
    • (2005) PLoS Comput. Biol , vol.1 , pp. 113-122
    • Ohler, U.1    Shomron, N.2    Burge, C.B.3
  • 17
    • 0342723790 scopus 로고    scopus 로고
    • Frequent alternative splicing of human genes
    • Mironov,A.A., Fickett,J.W. and Gelfand,M.S. (1999) Frequent alternative splicing of human genes. Genome. Res., 9(12), 1288-1293.
    • (1999) Genome. Res , vol.9 , Issue.12 , pp. 1288-1293
    • Mironov, A.A.1    Fickett, J.W.2    Gelfand, M.S.3
  • 18
    • 27244441641 scopus 로고    scopus 로고
    • The importance of being divisible by three in alternative splicing
    • Magen,A. and Ast,G. (2005) The importance of being divisible by three in alternative splicing. Nucleic Acids Res., 33, 5574-5582.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5574-5582
    • Magen, A.1    Ast, G.2
  • 19
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
    • Modrek,B. and Lee,C.J. (2003) Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat. Genet., 34, 177-180.
    • (2003) Nat. Genet , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.J.2
  • 21
    • 0038486897 scopus 로고    scopus 로고
    • Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
    • Sorek,R. and Ast,G. (2003) Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome. Res., 13, 1631-1637.
    • (2003) Genome. Res , vol.13 , pp. 1631-1637
    • Sorek, R.1    Ast, G.2
  • 22
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel,A. et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome. Res., 15 1034-1050.
    • (2005) Genome. Res , vol.15 , pp. 1034-1050
    • Siepel, A.1
  • 25
    • 13244289881 scopus 로고    scopus 로고
    • Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins
    • Diella,F. et al. (2004) Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics, 5, 79.
    • (2004) BMC Bioinformatics , vol.5 , pp. 79
    • Diella, F.1
  • 28
    • 0035949674 scopus 로고    scopus 로고
    • A computational analysis of sequence features involved in recognition of short introns
    • Lim,L.P. and Burge,C.B. (2001) A computational analysis of sequence features involved in recognition of short introns. Proc. Natl Acad. Sci. USA, 98, 11193-11198.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 11193-11198
    • Lim, L.P.1    Burge, C.B.2
  • 29
    • 0037324382 scopus 로고    scopus 로고
    • Molecular basis of cell membrane estrogen receptor interaction with phosphatidylinositol 3-kinase in endothelial cells
    • Simoncini,T., Rabkin,E. and Liao,J.K. (2003) Molecular basis of cell membrane estrogen receptor interaction with phosphatidylinositol 3-kinase in endothelial cells. Arterioscler. Thromb. Vasc. Biol., 23, 198-203.
    • (2003) Arterioscler. Thromb. Vasc. Biol , vol.23 , pp. 198-203
    • Simoncini, T.1    Rabkin, E.2    Liao, J.K.3
  • 30
    • 0035654437 scopus 로고    scopus 로고
    • Estrogen receptors and endocrine diseases: Lessons from estrogen receptor knockout mice
    • Mueller,S.O. and Korach,K.S. (2001) Estrogen receptors and endocrine diseases: Lessons from estrogen receptor knockout mice. Curr. Opin. Pharmacol., 1, 613-619.
    • (2001) Curr. Opin. Pharmacol , vol.1 , pp. 613-619
    • Mueller, S.O.1    Korach, K.S.2
  • 34
    • 0000093674 scopus 로고    scopus 로고
    • Modeling dependencies in pre-mRNA splicing signals
    • Salzberg,S.L, Searls,D.B. and Kasif,S, eds, Elsevier Science, Amsterdam
    • Burge,C.B. (1998) Modeling dependencies in pre-mRNA splicing signals. In Salzberg,S.L., Searls,D.B. and Kasif,S. (eds), Computational Methods in Molecular Biology. Elsevier Science, Amsterdam.
    • (1998) Computational Methods in Molecular Biology
    • Burge, C.B.1
  • 35
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
    • Obenauer,J.C., Cantley,L.C. and Yaffe,M.B. (2003) Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res., 31, 3635-3641.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 36
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen,S. and Skaletsky,H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.
    • (2000) Methods Mol. Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.